Wall clock time and date at job start Sat Mar 6 2021 20:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46897 * 34.72146 * 5 3 2 7 7 C 1.34779 * 120.00339 * 300.00210 * 6 5 3 8 8 O 1.21284 * 119.99602 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00419 * 179.97438 * 7 6 5 10 10 O 1.42898 * 109.47458 * 180.02562 * 9 7 6 11 11 C 1.35976 * 116.99966 * 179.97438 * 10 9 7 12 12 C 1.38681 * 120.00238 * 179.97438 * 11 10 9 13 13 C 1.50704 * 119.99375 * 0.02619 * 12 11 10 14 14 O 1.42897 * 109.47330 * 284.99662 * 13 12 11 15 15 Si 1.86302 * 109.46728 * 164.99930 * 13 12 11 16 16 C 1.38152 * 120.00377 * 180.02562 * 12 11 10 17 17 C 1.38677 * 119.99836 * 0.02562 * 16 12 11 18 18 O 1.35985 * 119.99700 * 180.02562 * 17 16 12 19 19 C 1.42896 * 116.99644 * 179.97438 * 18 17 16 20 20 C 1.38718 * 120.00010 * 359.97438 * 17 16 12 21 21 C 1.38111 * 119.99837 * 359.72913 * 20 17 16 22 22 C 1.52997 * 109.46804 * 274.72562 * 5 3 2 23 23 C 1.53006 * 109.46908 * 179.97438 * 22 5 3 24 24 C 1.52996 * 109.47416 * 59.99581 * 23 22 5 25 25 H 1.08992 * 109.47375 * 180.02562 * 24 23 22 26 26 C 1.53008 * 109.46876 * 60.00264 * 24 23 22 27 27 C 1.53000 * 109.47253 * 300.00429 * 24 23 22 28 28 C 1.52993 * 109.47148 * 154.72154 * 5 3 2 29 29 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 30 30 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 32 32 H 0.96999 * 119.99905 * 120.00347 * 6 5 3 33 33 H 1.09005 * 109.46962 * 300.00435 * 9 7 6 34 34 H 1.09002 * 109.46884 * 59.99936 * 9 7 6 35 35 H 1.08997 * 109.47437 * 44.99977 * 13 12 11 36 36 H 0.96704 * 113.99826 * 60.00528 * 14 13 12 37 37 H 1.48504 * 109.99849 * 299.99749 * 15 13 12 38 38 H 1.48495 * 109.99990 * 61.31985 * 15 13 12 39 39 H 1.07995 * 119.99702 * 179.97438 * 16 12 11 40 40 H 1.09007 * 109.47093 * 60.00439 * 19 18 17 41 41 H 1.09002 * 109.47216 * 180.02562 * 19 18 17 42 42 H 1.09001 * 109.47652 * 300.00251 * 19 18 17 43 43 H 1.07998 * 119.99732 * 180.02562 * 20 17 16 44 44 H 1.08001 * 119.99503 * 180.29639 * 21 20 17 45 45 H 1.09001 * 109.47659 * 299.99301 * 22 5 3 46 46 H 1.08995 * 109.47574 * 60.00079 * 22 5 3 47 47 H 1.08999 * 109.47016 * 299.99634 * 23 22 5 48 48 H 1.09005 * 109.46989 * 180.02562 * 23 22 5 49 49 H 1.09002 * 109.47007 * 300.00079 * 26 24 23 50 50 H 1.08996 * 109.46969 * 59.99877 * 26 24 23 51 51 H 1.08995 * 109.47239 * 180.02562 * 26 24 23 52 52 H 1.08999 * 109.46803 * 299.99717 * 27 24 23 53 53 H 1.08998 * 109.47154 * 179.97438 * 27 24 23 54 54 H 1.08996 * 109.47599 * 300.00236 * 28 5 3 55 55 H 1.09001 * 109.47077 * 60.00845 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 7 4.1131 0.1669 -0.7877 7 6 3.8539 -1.1064 -0.4298 8 8 3.1684 -1.3349 0.5443 9 6 4.4158 -2.2462 -1.2399 10 8 4.0037 -3.4878 -0.6650 11 6 4.4280 -4.6239 -1.2801 12 6 4.0652 -5.8632 -0.7744 13 6 3.2001 -5.9507 0.4565 14 8 3.9815 -5.6370 1.6111 15 14 2.5213 -7.6782 0.6168 16 6 4.4966 -7.0174 -1.3990 17 6 5.2931 -6.9368 -2.5315 18 8 5.7173 -8.0729 -3.1466 19 6 6.5342 -7.9153 -4.3083 20 6 5.6560 -5.6972 -3.0373 21 6 5.2196 -4.5433 -2.4164 22 6 4.0823 1.1826 1.4368 23 6 5.6103 1.2621 1.4362 24 6 6.0517 2.5911 0.8201 25 1 7.1402 2.6475 0.8193 26 6 5.4812 3.7487 1.6421 27 6 5.5356 2.6834 -0.6173 28 6 4.0071 2.6042 -0.6164 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 4.6616 0.3497 -1.5666 33 1 4.0478 -2.1803 -2.2638 34 1 5.5043 -2.1892 -1.2407 35 1 2.3757 -5.2427 0.3724 36 1 4.3672 -4.7503 1.5959 37 1 1.7067 -8.0166 -0.5779 38 1 3.6346 -8.6497 0.7643 39 1 4.2144 -7.9824 -1.0049 40 1 7.4401 -7.3694 -4.0442 41 1 6.8021 -8.8966 -4.7001 42 1 5.9834 -7.3595 -5.0672 43 1 6.2759 -5.6344 -3.9194 44 1 5.4982 -3.5782 -2.8131 45 1 3.6756 2.0070 2.0226 46 1 3.7684 0.2355 1.8755 47 1 6.0168 0.4374 0.8506 48 1 5.9780 1.1959 2.4602 49 1 4.3926 3.6921 1.6426 50 1 5.8488 3.6829 2.6661 51 1 5.7952 4.6955 1.2030 52 1 5.9421 1.8588 -1.2028 53 1 5.8497 3.6305 -1.0560 54 1 3.6394 2.6700 -1.6404 55 1 3.6004 3.4286 -0.0307 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_4974302.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:52:50 Heat of formation + Delta-G solvation = -184.376355 kcal Electronic energy + Delta-G solvation = -39686.216394 eV Core-core repulsion = 34656.461039 eV Total energy + Delta-G solvation = -5029.755355 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.56303 -41.81407 -40.71732 -40.12408 -39.30308 -38.09818 -37.52035 -36.97010 -35.51403 -32.92544 -32.40945 -31.96938 -30.93875 -29.24026 -28.95029 -28.04559 -27.69312 -26.61647 -24.58984 -24.01589 -23.81376 -22.47641 -22.15874 -21.33104 -19.74865 -19.48904 -18.89062 -18.83904 -18.48976 -18.17827 -17.93362 -17.57951 -17.40006 -17.23052 -16.74428 -16.69886 -16.17627 -16.06425 -15.65567 -15.53299 -15.48190 -15.36752 -15.03445 -14.91176 -14.65515 -14.52045 -14.13413 -14.00823 -13.95959 -13.77820 -13.69649 -13.56952 -13.47147 -13.30196 -13.09884 -13.04115 -12.70827 -12.62332 -12.54966 -12.35216 -12.21621 -12.09684 -11.85171 -11.83529 -11.51479 -11.38928 -11.26156 -11.23193 -11.13372 -11.09327 -10.69665 -10.26467 -10.22086 -8.91251 -4.86294 -0.05214 0.23489 0.88673 1.33235 1.43273 1.48911 1.59789 1.75144 1.90833 2.23595 2.44345 2.50500 3.24322 3.44838 3.50375 3.53312 3.62468 3.66959 3.85694 3.93011 3.99058 4.00649 4.03728 4.05959 4.06613 4.12902 4.15003 4.16701 4.20862 4.26100 4.29387 4.33631 4.35299 4.40912 4.47193 4.57316 4.58538 4.60061 4.68058 4.80113 4.85453 4.87743 4.89860 5.02595 5.03579 5.07271 5.09460 5.10870 5.17887 5.27287 5.29908 5.31263 5.35489 5.40477 5.54962 6.08277 6.31700 6.43771 6.57831 6.58255 7.18031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.332 6.332 3 C 0.449 3.551 4 O -0.536 6.536 5 C 0.208 3.792 6 N -0.703 5.703 7 C 0.513 3.487 8 O -0.516 6.516 9 C 0.038 3.962 10 O -0.305 6.305 11 C 0.101 3.899 12 C -0.118 4.118 13 C -0.081 4.081 14 O -0.544 6.544 15 Si 0.808 3.192 16 C -0.143 4.143 17 C 0.087 3.913 18 O -0.342 6.342 19 C 0.017 3.983 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.093 4.093 25 H 0.087 0.913 26 C -0.157 4.157 27 C -0.108 4.108 28 C -0.113 4.113 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.424 0.576 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.373 0.627 37 H -0.268 1.268 38 H -0.288 1.288 39 H 0.122 0.878 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.164 0.836 44 H 0.175 0.825 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.049 0.951 50 H 0.052 0.948 51 H 0.061 0.939 52 H 0.088 0.912 53 H 0.085 0.915 54 H 0.083 0.917 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 3.383 -6.509 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.246 6.246 3 C 0.292 3.708 4 O -0.425 6.425 5 C 0.119 3.881 6 N -0.363 5.363 7 C 0.298 3.702 8 O -0.389 6.389 9 C -0.040 4.040 10 O -0.218 6.218 11 C 0.056 3.944 12 C -0.119 4.119 13 C -0.189 4.189 14 O -0.350 6.350 15 Si 0.710 3.290 16 C -0.162 4.162 17 C 0.042 3.958 18 O -0.257 6.257 19 C -0.077 4.077 20 C -0.178 4.178 21 C -0.173 4.173 22 C -0.167 4.167 23 C -0.138 4.138 24 C -0.111 4.111 25 H 0.106 0.894 26 C -0.214 4.214 27 C -0.145 4.145 28 C -0.150 4.150 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.264 0.736 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.221 0.779 37 H -0.194 1.194 38 H -0.215 1.215 39 H 0.140 0.860 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.182 0.818 44 H 0.192 0.808 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.106 0.894 53 H 0.104 0.896 54 H 0.102 0.898 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.698 1.922 -5.761 7.678 hybrid contribution 0.598 1.397 -1.263 1.976 sum 5.296 3.319 -7.024 9.402 Atomic orbital electron populations 1.23432 0.76521 1.04809 1.02065 1.86872 1.23414 1.31989 1.82373 1.24842 0.93179 0.81529 0.71296 1.90669 1.67622 1.37381 1.46843 1.20145 0.83167 0.89628 0.95142 1.45678 1.54837 1.03326 1.32432 1.20361 0.80430 0.83937 0.85430 1.90787 1.36318 1.84121 1.27679 1.22695 1.02573 0.80667 0.98037 1.86088 1.71250 1.11943 1.52506 1.18652 0.96854 0.85379 0.93541 1.19541 1.02315 0.90484 0.99558 1.25298 0.94885 1.15213 0.83492 1.86658 1.69981 1.38544 1.39856 0.92555 0.81221 0.70218 0.85056 1.20155 1.01501 0.97790 0.96706 1.18995 0.96605 0.86681 0.93567 1.86078 1.66687 1.29430 1.43511 1.23378 0.93882 1.05515 0.84906 1.21427 1.03295 0.90361 1.02691 1.21466 0.99613 1.00896 0.95321 1.21949 0.98570 1.03414 0.92797 1.21464 0.92314 0.98219 1.01821 1.21160 1.00956 0.94038 0.94928 0.89447 1.21988 1.00856 0.98505 1.00084 1.21625 0.91947 1.04190 0.96716 1.21823 0.98603 0.92677 1.01936 0.91916 0.86539 0.92514 0.73629 0.86375 0.85519 0.90170 0.77872 1.19421 1.21542 0.86041 0.91186 0.86844 0.91179 0.81813 0.80797 0.91014 0.90959 0.90713 0.91438 0.93218 0.92898 0.92023 0.89385 0.89598 0.89817 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.31 16 2 O -0.33 -2.70 6.73 -43.59 -0.29 -2.99 16 3 C 0.45 3.21 6.71 71.24 0.48 3.68 16 4 O -0.54 -6.51 15.84 21.95 0.35 -6.17 16 5 C 0.21 -0.15 0.63 2.86 0.00 -0.15 16 6 N -0.70 4.33 4.03 -426.34 -1.72 2.62 16 7 C 0.51 -0.72 6.83 87.66 0.60 -0.12 16 8 O -0.52 -4.07 11.76 26.91 0.32 -3.75 16 9 C 0.04 -0.26 5.22 71.24 0.37 0.12 16 10 O -0.30 -0.54 8.56 -74.24 -0.64 -1.17 16 11 C 0.10 0.27 6.62 22.49 0.15 0.42 16 12 C -0.12 -0.86 5.28 -19.78 -0.10 -0.97 16 13 C -0.08 -0.56 2.33 71.24 0.17 -0.39 16 14 O -0.54 -4.60 12.65 -148.98 -1.89 -6.48 16 15 Si 0.81 4.15 30.40 68.60 2.09 6.24 16 16 C -0.14 -1.31 8.59 22.35 0.19 -1.11 16 17 C 0.09 0.52 6.69 22.49 0.15 0.67 16 18 O -0.34 -2.04 10.50 -93.38 -0.98 -3.02 16 19 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 20 C -0.16 0.12 9.03 22.35 0.20 0.32 16 21 C -0.15 0.42 9.03 22.35 0.20 0.62 16 22 C -0.13 -0.10 4.23 30.60 0.13 0.03 16 23 C -0.10 0.42 5.29 30.60 0.16 0.58 16 24 C -0.09 0.61 3.20 -10.79 -0.03 0.58 16 25 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 26 C -0.16 0.59 8.50 71.98 0.61 1.20 16 27 C -0.11 0.99 5.28 30.61 0.16 1.16 16 28 C -0.11 0.49 4.04 30.61 0.12 0.61 16 29 H 0.06 0.21 8.13 -2.39 -0.02 0.19 16 30 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.42 -5.85 7.32 -92.71 -0.68 -6.53 16 33 H 0.12 -1.40 7.65 -2.38 -0.02 -1.42 16 34 H 0.13 -1.70 7.67 -2.39 -0.02 -1.72 16 35 H 0.08 0.50 7.82 -2.39 -0.02 0.48 16 36 H 0.37 2.01 8.60 -74.05 -0.64 1.38 16 37 H -0.27 -2.10 7.11 99.48 0.71 -1.39 16 38 H -0.29 -3.14 6.81 99.48 0.68 -2.47 16 39 H 0.12 1.33 4.93 -2.91 -0.01 1.32 16 40 H 0.07 -0.46 7.66 -2.38 -0.02 -0.48 16 41 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 42 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 43 H 0.16 -1.15 6.29 -2.91 -0.02 -1.17 16 44 H 0.17 -1.98 6.29 -2.91 -0.02 -2.00 16 45 H 0.07 0.18 6.43 -2.39 -0.02 0.17 16 46 H 0.07 0.44 6.17 -2.39 -0.01 0.42 16 47 H 0.07 -0.45 7.60 -2.39 -0.02 -0.46 16 48 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 49 H 0.05 -0.06 4.81 -2.39 -0.01 -0.07 16 50 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 51 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 52 H 0.09 -1.19 6.86 -2.39 -0.02 -1.21 16 53 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 54 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 55 H 0.08 -0.06 6.16 -2.39 -0.01 -0.07 16 Total: 0.00 -26.55 423.58 2.75 -23.80 By element: Atomic # 1 Polarization: -18.32 SS G_CDS: -0.36 Total: -18.68 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.87 Total: 9.61 kcal Atomic # 7 Polarization: 4.33 SS G_CDS: -1.72 Total: 2.62 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -3.13 Total: -23.59 kcal Atomic # 14 Polarization: 4.15 SS G_CDS: 2.09 Total: 6.24 kcal Total: -26.55 2.75 -23.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_4974302.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.578 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds