Wall clock time and date at job start Sat Mar 6 2021 20:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 116.99454 * 2 1 4 4 O 1.20815 * 120.00498 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99422 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47106 * 35.00460 * 5 3 2 7 7 C 1.34774 * 120.00233 * 299.99439 * 6 5 3 8 8 O 1.21284 * 119.99952 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00212 * 180.02562 * 7 6 5 10 10 O 1.42900 * 109.46869 * 180.02562 * 9 7 6 11 11 C 1.35899 * 116.99431 * 180.02562 * 10 9 7 12 12 C 1.38752 * 120.02519 * 179.72581 * 11 10 9 13 13 C 1.50698 * 119.97292 * 359.97438 * 12 11 10 14 14 O 1.42907 * 109.47169 * 284.99703 * 13 12 11 15 15 Si 1.86305 * 109.47454 * 165.00281 * 13 12 11 16 16 C 1.38201 * 120.05699 * 179.71827 * 12 11 10 17 17 C 1.38160 * 120.10366 * 0.54700 * 16 12 11 18 18 C 1.38791 * 120.05506 * 359.73051 * 17 16 12 19 19 O 1.35899 * 120.02450 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00268 * 359.97375 * 19 18 17 21 21 C 1.38616 * 119.94801 * 359.97438 * 18 17 16 22 22 C 1.52997 * 109.47103 * 275.00394 * 5 3 2 23 23 C 1.53006 * 109.46974 * 180.02562 * 22 5 3 24 24 C 1.52999 * 109.46997 * 59.99987 * 23 22 5 25 25 H 1.09002 * 109.46716 * 180.02562 * 24 23 22 26 26 C 1.52997 * 109.47317 * 60.00177 * 24 23 22 27 27 C 1.52992 * 109.46961 * 299.99715 * 24 23 22 28 28 C 1.52996 * 109.47224 * 60.00654 * 27 24 23 29 29 H 1.09001 * 109.46826 * 299.99091 * 1 2 3 30 30 H 1.08999 * 109.47221 * 59.99551 * 1 2 3 31 31 H 1.09002 * 109.46372 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99916 * 119.99737 * 6 5 3 33 33 H 1.09004 * 109.47113 * 300.00258 * 9 7 6 34 34 H 1.09002 * 109.47152 * 60.00340 * 9 7 6 35 35 H 1.08996 * 109.47649 * 44.99615 * 13 12 11 36 36 H 0.96703 * 114.00085 * 300.00544 * 14 13 12 37 37 H 1.48496 * 110.00172 * 179.97438 * 15 13 12 38 38 H 1.48506 * 109.99578 * 301.31700 * 15 13 12 39 39 H 1.07995 * 119.95297 * 180.27679 * 16 12 11 40 40 H 1.07998 * 119.97037 * 179.69840 * 17 16 12 41 41 H 1.09002 * 109.46867 * 300.00402 * 20 19 18 42 42 H 1.09001 * 109.46921 * 59.99908 * 20 19 18 43 43 H 1.08996 * 109.46952 * 179.97438 * 20 19 18 44 44 H 1.07993 * 120.05472 * 180.02562 * 21 18 17 45 45 H 1.09000 * 109.47140 * 300.00046 * 22 5 3 46 46 H 1.09001 * 109.47375 * 60.00064 * 22 5 3 47 47 H 1.09000 * 109.46866 * 299.99774 * 23 22 5 48 48 H 1.09001 * 109.46611 * 179.97438 * 23 22 5 49 49 H 1.09002 * 109.47153 * 299.99641 * 26 24 23 50 50 H 1.09001 * 109.46832 * 179.97438 * 26 24 23 51 51 H 1.09004 * 109.47261 * 59.99813 * 26 24 23 52 52 H 1.09001 * 109.47066 * 180.02562 * 27 24 23 53 53 H 1.08996 * 109.47747 * 300.00196 * 27 24 23 54 54 H 1.09004 * 109.47552 * 59.99646 * 28 27 24 55 55 H 1.09004 * 109.47298 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1129 0.1709 -0.7933 7 6 3.8539 -1.1041 -0.4415 8 8 3.1680 -1.3374 0.5311 9 6 4.4166 -2.2399 -1.2567 10 8 4.0046 -3.4843 -0.6878 11 6 4.4301 -4.6167 -1.3071 12 6 4.0718 -5.8594 -0.8046 13 6 3.2109 -5.9531 0.4287 14 8 3.9953 -5.6414 1.5820 15 14 2.5366 -7.6827 0.5856 16 6 4.4994 -7.0113 -1.4372 17 6 5.2938 -6.9287 -2.5646 18 6 5.6596 -5.6880 -3.0678 19 8 6.4405 -5.6075 -4.1770 20 6 6.8491 -6.8400 -4.7738 21 6 5.2269 -4.5312 -2.4386 22 6 4.0828 1.1757 1.4362 23 6 5.6107 1.2564 1.4356 24 6 6.0508 2.5891 0.8264 25 1 7.1393 2.6463 0.8256 26 6 5.4795 3.7418 1.6544 27 6 5.5343 2.6882 -0.6104 28 6 4.0065 2.6076 -0.6098 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 4.6612 0.3575 -1.5714 33 1 4.0490 -2.1693 -2.2805 34 1 5.5051 -2.1827 -1.2567 35 1 2.3846 -5.2467 0.3496 36 1 4.7501 -6.2309 1.7154 37 1 1.6863 -7.7883 1.7984 38 1 1.7453 -8.0306 -0.6220 39 1 4.2159 -7.9776 -1.0472 40 1 5.6307 -7.8303 -3.0544 41 1 7.4243 -7.4200 -4.0521 42 1 5.9684 -7.4068 -5.0761 43 1 7.4656 -6.6334 -5.6485 44 1 5.5102 -3.5649 -2.8289 45 1 3.6761 1.9972 2.0260 46 1 3.7689 0.2265 1.8704 47 1 6.0177 0.4351 0.8457 48 1 5.9786 1.1861 2.4593 49 1 4.3910 3.6844 1.6548 50 1 5.7935 4.6912 1.2206 51 1 5.8475 3.6711 2.6780 52 1 5.8482 3.6375 -1.0446 53 1 5.9413 1.8671 -1.2003 54 1 3.5994 3.4289 -0.0199 55 1 3.6385 2.6787 -1.6334 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_4974312.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:52:54 Heat of formation + Delta-G solvation = -184.391530 kcal Electronic energy + Delta-G solvation = -39736.218105 eV Core-core repulsion = 34706.462092 eV Total energy + Delta-G solvation = -5029.756013 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.60441 -41.72152 -40.72367 -40.06200 -39.31950 -38.22236 -37.57218 -36.88776 -35.55395 -32.53878 -32.21409 -32.00078 -31.19648 -29.26234 -28.97237 -28.31380 -27.73302 -26.08773 -24.61104 -24.00140 -23.71935 -22.46895 -22.14247 -21.36858 -19.96071 -19.61596 -18.89279 -18.62224 -18.20977 -17.94772 -17.68955 -17.44646 -17.34270 -17.16846 -16.72477 -16.62013 -16.48357 -16.10302 -15.79861 -15.53021 -15.49574 -15.11658 -15.04110 -14.91305 -14.60486 -14.54539 -14.44719 -14.04446 -13.87112 -13.81140 -13.68375 -13.46283 -13.32752 -13.28093 -13.13608 -13.11459 -12.73211 -12.64349 -12.45557 -12.25912 -12.12326 -11.98856 -11.89877 -11.88246 -11.84124 -11.59797 -11.40806 -11.26738 -11.16664 -10.74657 -10.33237 -10.31079 -9.67088 -9.07194 -5.02804 0.23283 0.33256 0.83994 1.33206 1.41310 1.45743 1.65177 1.70463 1.99321 2.26317 2.53564 2.60424 3.21260 3.47260 3.56210 3.59121 3.63161 3.76135 3.85903 3.94107 3.96610 4.00719 4.02910 4.07431 4.09799 4.10843 4.14398 4.19405 4.23266 4.37136 4.37604 4.41906 4.44300 4.45063 4.49468 4.51370 4.55943 4.63948 4.77372 4.81236 4.82666 4.85614 5.00850 5.04417 5.04627 5.07890 5.15030 5.24306 5.25136 5.26378 5.30407 5.33090 5.37906 5.50378 5.53057 6.14548 6.36167 6.42605 6.52811 6.88457 7.13785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.449 3.551 4 O -0.534 6.534 5 C 0.207 3.793 6 N -0.703 5.703 7 C 0.513 3.487 8 O -0.517 6.517 9 C 0.038 3.962 10 O -0.300 6.300 11 C 0.176 3.824 12 C -0.202 4.202 13 C -0.064 4.064 14 O -0.556 6.556 15 Si 0.789 3.211 16 C -0.032 4.032 17 C -0.238 4.238 18 C 0.163 3.837 19 O -0.331 6.331 20 C 0.016 3.984 21 C -0.254 4.254 22 C -0.129 4.129 23 C -0.101 4.101 24 C -0.092 4.092 25 H 0.089 0.911 26 C -0.157 4.157 27 C -0.108 4.108 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.424 0.576 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.390 0.610 37 H -0.304 1.304 38 H -0.281 1.281 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.152 0.848 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.063 0.937 51 H 0.052 0.948 52 H 0.088 0.912 53 H 0.086 0.914 54 H 0.086 0.914 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -3.812 -6.444 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.249 6.249 3 C 0.292 3.708 4 O -0.423 6.423 5 C 0.119 3.881 6 N -0.362 5.362 7 C 0.298 3.702 8 O -0.390 6.390 9 C -0.040 4.040 10 O -0.212 6.212 11 C 0.130 3.870 12 C -0.204 4.204 13 C -0.173 4.173 14 O -0.363 6.363 15 Si 0.694 3.306 16 C -0.050 4.050 17 C -0.257 4.257 18 C 0.117 3.883 19 O -0.244 6.244 20 C -0.078 4.078 21 C -0.273 4.273 22 C -0.167 4.167 23 C -0.138 4.138 24 C -0.110 4.110 25 H 0.107 0.893 26 C -0.214 4.214 27 C -0.145 4.145 28 C -0.150 4.150 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.264 0.736 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.099 0.901 36 H 0.239 0.761 37 H -0.233 1.233 38 H -0.208 1.208 39 H 0.182 0.818 40 H 0.177 0.823 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.169 0.831 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.072 0.928 52 H 0.107 0.893 53 H 0.104 0.896 54 H 0.104 0.896 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.699 -3.547 -5.592 9.420 hybrid contribution -0.682 0.909 -0.405 1.206 sum 6.018 -2.638 -5.998 8.896 Atomic orbital electron populations 1.23424 0.76563 1.04638 1.02211 1.86895 1.23442 1.32171 1.82406 1.24850 0.93203 0.81476 0.71310 1.90656 1.67574 1.37247 1.46809 1.20181 0.83161 0.89754 0.95050 1.45679 1.54874 1.03283 1.32400 1.20363 0.80427 0.83997 0.85382 1.90791 1.36394 1.84024 1.27820 1.22668 1.02380 0.81127 0.97841 1.86220 1.70401 1.12295 1.52309 1.18595 0.92121 0.86059 0.90266 1.19726 1.07730 0.91162 1.01749 1.25062 0.95923 1.12385 0.83913 1.86545 1.45331 1.60570 1.43898 0.94167 0.83415 0.76545 0.76428 1.20852 0.93678 0.97017 0.93422 1.21434 1.06037 0.97335 1.00886 1.18887 0.89520 0.93718 0.86214 1.86055 1.63906 1.35279 1.39157 1.23400 1.00927 0.84494 0.98973 1.20546 1.07763 0.99479 0.99489 1.21948 0.98709 1.03233 0.92850 1.21466 0.92211 0.98311 1.01857 1.21157 1.01042 0.93896 0.94906 0.89290 1.21983 1.00812 0.98510 1.00060 1.21618 0.91906 1.04243 0.96758 1.21819 0.98679 0.92426 1.02026 0.92402 0.91659 0.86902 0.73634 0.86695 0.85945 0.90051 0.76072 1.23290 1.20799 0.81839 0.82260 0.91037 0.91424 0.86687 0.83062 0.90793 0.91426 0.91009 0.91370 0.93265 0.91822 0.92842 0.89319 0.89592 0.89574 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 113.37 1.20 1.39 16 2 O -0.33 -3.95 6.73 -43.68 -0.29 -4.25 16 3 C 0.45 4.56 6.71 71.24 0.48 5.03 16 4 O -0.53 -7.70 15.84 22.00 0.35 -7.35 16 5 C 0.21 0.50 0.63 2.86 0.00 0.50 16 6 N -0.70 1.44 4.03 -426.32 -1.72 -0.28 16 7 C 0.51 1.97 6.84 87.66 0.60 2.57 16 8 O -0.52 -7.08 11.75 26.92 0.32 -6.76 16 9 C 0.04 -0.03 5.22 71.24 0.37 0.34 16 10 O -0.30 -2.28 8.99 -73.37 -0.66 -2.94 16 11 C 0.18 0.87 6.66 22.49 0.15 1.02 16 12 C -0.20 -0.71 5.28 -19.75 -0.10 -0.82 16 13 C -0.06 -0.35 2.37 71.24 0.17 -0.18 16 14 O -0.56 -3.81 12.88 -148.98 -1.92 -5.72 16 15 Si 0.79 0.33 29.91 68.60 2.05 2.39 16 16 C -0.03 0.06 8.65 22.24 0.19 0.25 16 17 C -0.24 0.55 9.04 22.38 0.20 0.75 16 18 C 0.16 0.14 6.68 22.49 0.15 0.29 16 19 O -0.33 -0.01 10.49 -92.42 -0.97 -0.98 16 20 C 0.02 -0.12 9.81 113.37 1.11 1.00 16 21 C -0.25 -0.40 8.97 22.46 0.20 -0.20 16 22 C -0.13 -0.51 4.23 30.60 0.13 -0.38 16 23 C -0.10 0.13 5.29 30.60 0.16 0.29 16 24 C -0.09 0.42 3.19 -10.80 -0.03 0.38 16 25 H 0.09 -0.56 8.14 -2.39 -0.02 -0.57 16 26 C -0.16 0.35 8.50 71.98 0.61 0.96 16 27 C -0.11 0.76 5.28 30.59 0.16 0.92 16 28 C -0.11 0.23 4.04 30.59 0.12 0.35 16 29 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 30 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.42 -4.13 7.32 -92.71 -0.68 -4.81 16 33 H 0.12 -0.65 7.66 -2.38 -0.02 -0.67 16 34 H 0.12 -0.83 7.66 -2.39 -0.02 -0.85 16 35 H 0.08 0.90 7.82 -2.39 -0.02 0.88 16 36 H 0.39 -1.14 8.70 -74.06 -0.64 -1.79 16 37 H -0.30 -2.63 7.11 99.48 0.71 -1.92 16 38 H -0.28 -1.20 7.11 99.48 0.71 -0.49 16 39 H 0.16 -1.32 5.11 -2.91 -0.01 -1.34 16 40 H 0.16 -1.24 6.29 -2.91 -0.02 -1.26 16 41 H 0.07 -0.67 7.66 -2.39 -0.02 -0.69 16 42 H 0.07 -0.60 7.66 -2.39 -0.02 -0.62 16 43 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 44 H 0.15 -0.40 6.30 -2.91 -0.02 -0.42 16 45 H 0.07 0.37 6.43 -2.39 -0.02 0.36 16 46 H 0.07 0.69 6.17 -2.39 -0.01 0.67 16 47 H 0.07 -0.17 7.60 -2.39 -0.02 -0.19 16 48 H 0.07 -0.03 8.14 -2.39 -0.02 -0.04 16 49 H 0.05 0.02 4.81 -2.39 -0.01 0.01 16 50 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 51 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 52 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 53 H 0.09 -0.93 6.86 -2.39 -0.02 -0.95 16 54 H 0.09 0.10 6.16 -2.39 -0.01 0.09 16 55 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 Total: 0.00 -30.02 424.41 2.69 -27.33 By element: Atomic # 1 Polarization: -15.57 SS G_CDS: -0.34 Total: -15.91 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 5.88 Total: 14.47 kcal Atomic # 7 Polarization: 1.44 SS G_CDS: -1.72 Total: -0.28 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -3.18 Total: -28.00 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.05 Total: 2.39 kcal Total: -30.02 2.69 -27.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_4974312.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.066 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds