Wall clock time and date at job start Sat Mar 6 2021 20:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00178 * 2 1 4 4 O 1.20827 * 119.99865 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00131 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46835 * 325.00132 * 5 3 2 7 7 C 1.34770 * 120.00415 * 60.00353 * 6 5 3 8 8 O 1.21288 * 119.99832 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00308 * 179.97438 * 7 6 5 10 10 O 1.42897 * 109.47071 * 179.97438 * 9 7 6 11 11 C 1.35997 * 116.99608 * 180.02562 * 10 9 7 12 12 C 1.39163 * 120.06995 * 179.72832 * 11 10 9 13 13 O 1.35991 * 120.07406 * 359.97438 * 12 11 10 14 14 C 1.42897 * 117.00341 * 180.02562 * 13 12 11 15 15 C 1.38567 * 119.85150 * 179.72139 * 12 11 10 16 16 C 1.38239 * 119.99627 * 0.54989 * 15 12 11 17 17 C 1.50705 * 119.92621 * 179.70322 * 16 15 12 18 18 O 1.42902 * 109.47096 * 65.01798 * 17 16 15 19 19 Si 1.86294 * 109.47299 * 185.02229 * 17 16 15 20 20 C 1.38255 * 120.14994 * 359.72531 * 16 15 12 21 21 C 1.38236 * 120.14471 * 359.97438 * 20 16 15 22 22 C 1.53002 * 109.46966 * 204.99908 * 5 3 2 23 23 C 1.52997 * 109.46817 * 179.97438 * 22 5 3 24 24 C 1.53006 * 109.47127 * 60.00361 * 23 22 5 25 25 H 1.09000 * 109.47050 * 179.97438 * 24 23 22 26 26 C 1.52997 * 109.47164 * 59.99836 * 24 23 22 27 27 C 1.52999 * 109.46626 * 299.99539 * 24 23 22 28 28 C 1.52996 * 109.47130 * 85.00183 * 5 3 2 29 29 H 1.08997 * 109.47037 * 300.00415 * 1 2 3 30 30 H 1.09004 * 109.47212 * 59.99948 * 1 2 3 31 31 H 1.08998 * 109.47381 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99824 * 239.99883 * 6 5 3 33 33 H 1.08992 * 109.46821 * 299.99825 * 9 7 6 34 34 H 1.09002 * 109.47060 * 59.99730 * 9 7 6 35 35 H 1.09004 * 109.46909 * 59.99787 * 14 13 12 36 36 H 1.09003 * 109.47189 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.46819 * 300.00099 * 14 13 12 38 38 H 1.08002 * 119.99651 * 180.27677 * 15 12 11 39 39 H 1.09003 * 109.46520 * 305.02350 * 17 16 15 40 40 H 0.96697 * 113.99801 * 60.00615 * 18 17 16 41 41 H 1.48501 * 109.99765 * 179.97438 * 19 17 16 42 42 H 1.48499 * 110.00077 * 301.31486 * 19 17 16 43 43 H 1.07996 * 119.92630 * 179.97438 * 20 16 15 44 44 H 1.08005 * 119.99867 * 179.97438 * 21 20 16 45 45 H 1.09002 * 109.47070 * 60.00090 * 22 5 3 46 46 H 1.08996 * 109.47407 * 299.99690 * 22 5 3 47 47 H 1.09001 * 109.47502 * 300.00518 * 23 22 5 48 48 H 1.09001 * 109.47289 * 180.02562 * 23 22 5 49 49 H 1.09001 * 109.47375 * 59.99966 * 26 24 23 50 50 H 1.09002 * 109.46777 * 180.02562 * 26 24 23 51 51 H 1.09000 * 109.47140 * 299.99948 * 26 24 23 52 52 H 1.09002 * 109.46719 * 180.02562 * 27 24 23 53 53 H 1.08993 * 109.47839 * 299.99931 * 27 24 23 54 54 H 1.09001 * 109.46993 * 300.00313 * 28 5 3 55 55 H 1.09000 * 109.47380 * 59.99418 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1128 0.1706 0.7932 7 6 3.8538 -1.1043 0.4414 8 8 3.1679 -1.3375 -0.5313 9 6 4.4165 -2.2401 1.2565 10 8 4.0044 -3.4845 0.6875 11 6 4.4293 -4.6177 1.3078 12 6 4.0610 -5.8645 0.8111 13 8 3.2750 -5.9523 -0.2952 14 6 2.9363 -7.2646 -0.7480 15 6 4.5013 -7.0162 1.4433 16 6 5.2952 -6.9251 2.5713 17 6 5.7677 -8.1788 3.2615 18 8 6.6417 -8.9009 2.3916 19 14 6.6802 -7.7232 4.8204 20 6 5.6564 -5.6865 3.0680 21 6 5.2256 -4.5336 2.4385 22 6 4.0070 2.6072 0.6101 23 6 5.5349 2.6870 0.6113 24 6 6.0519 2.5876 -0.8254 25 1 7.1404 2.6449 -0.8246 26 6 5.4816 3.7407 -1.6535 27 6 5.6112 1.2552 -1.4348 28 6 4.0828 1.1757 -1.4362 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.6612 0.3572 1.5714 33 1 5.5049 -2.1829 1.2564 34 1 4.0489 -2.1696 2.2802 35 1 2.3957 -7.7918 0.0381 36 1 2.3081 -7.1918 -1.6357 37 1 3.8474 -7.8112 -0.9918 38 1 4.2206 -7.9851 1.0572 39 1 4.9086 -8.8013 3.5119 40 1 7.4296 -8.4067 2.1269 41 1 7.1507 -8.9510 5.5106 42 1 7.8352 -6.8483 4.4956 43 1 6.2763 -5.6195 3.9498 44 1 5.5088 -3.5672 2.8289 45 1 3.6390 2.6778 1.6337 46 1 3.6004 3.4287 0.0203 47 1 5.9412 1.8654 1.2012 48 1 5.8489 3.6360 1.0459 49 1 5.7955 4.6900 -1.2193 50 1 5.8496 3.6696 -2.6771 51 1 4.3931 3.6839 -1.6544 52 1 5.9799 1.1842 -2.4581 53 1 6.0175 0.4337 -0.8449 54 1 3.7688 0.2265 -1.8704 55 1 3.6761 1.9972 -2.0260 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11976204_60476.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:53:02 Heat of formation + Delta-G solvation = -181.575412 kcal Electronic energy + Delta-G solvation = -39269.567964 eV Core-core repulsion = 34239.934067 eV Total energy + Delta-G solvation = -5029.633897 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.55099 -41.71137 -40.66311 -39.80597 -39.05593 -38.80643 -37.52568 -36.99661 -35.50555 -32.54250 -31.96787 -31.81158 -31.37664 -29.27012 -28.97259 -28.40138 -27.70346 -26.17782 -24.54022 -23.94037 -23.61253 -22.63024 -22.02367 -21.32296 -19.83283 -19.57697 -18.85204 -18.49152 -18.46578 -18.07566 -17.85199 -17.47827 -17.33980 -17.05441 -16.71591 -16.59597 -16.14201 -16.07904 -15.79343 -15.75778 -15.44629 -15.36026 -15.00617 -14.88510 -14.66069 -14.52210 -14.31279 -14.01945 -13.78485 -13.75398 -13.64280 -13.52492 -13.40358 -13.28931 -13.07269 -12.70243 -12.66133 -12.57414 -12.53369 -12.17009 -12.11862 -12.07122 -11.95840 -11.84824 -11.82797 -11.60403 -11.37390 -11.23222 -11.13220 -10.68523 -10.59465 -10.25710 -9.75900 -8.88537 -4.87038 0.19853 0.30844 0.89311 1.34773 1.48132 1.52435 1.64319 1.76558 2.00802 2.33266 2.55253 2.58385 3.26083 3.42830 3.51418 3.59648 3.63275 3.68457 3.88889 3.92139 3.99574 4.04167 4.07320 4.08944 4.15184 4.17136 4.18422 4.20027 4.26654 4.31141 4.31934 4.38383 4.40834 4.47759 4.57241 4.58632 4.59503 4.67132 4.67784 4.80643 4.85461 4.88631 5.03691 5.03910 5.07651 5.11341 5.15553 5.19228 5.27908 5.30226 5.35773 5.39905 5.41030 5.55407 5.61994 5.99941 6.41859 6.50940 6.56269 6.58750 7.21407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C 0.449 3.551 4 O -0.535 6.535 5 C 0.207 3.793 6 N -0.702 5.702 7 C 0.511 3.489 8 O -0.521 6.521 9 C 0.037 3.963 10 O -0.309 6.309 11 C 0.089 3.911 12 C 0.077 3.923 13 O -0.333 6.333 14 C 0.021 3.979 15 C -0.152 4.152 16 C -0.116 4.116 17 C -0.085 4.085 18 O -0.551 6.551 19 Si 0.776 3.224 20 C -0.111 4.111 21 C -0.160 4.160 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.092 4.092 25 H 0.088 0.912 26 C -0.157 4.157 27 C -0.101 4.101 28 C -0.130 4.130 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.425 0.575 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.386 0.614 41 H -0.308 1.308 42 H -0.272 1.272 43 H 0.157 0.843 44 H 0.176 0.824 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.051 0.949 51 H 0.048 0.952 52 H 0.066 0.934 53 H 0.073 0.927 54 H 0.067 0.933 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 1.835 6.775 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.248 6.248 3 C 0.292 3.708 4 O -0.424 6.424 5 C 0.118 3.882 6 N -0.362 5.362 7 C 0.297 3.703 8 O -0.395 6.395 9 C -0.041 4.041 10 O -0.223 6.223 11 C 0.043 3.957 12 C 0.031 3.969 13 O -0.247 6.247 14 C -0.074 4.074 15 C -0.171 4.171 16 C -0.117 4.117 17 C -0.193 4.193 18 O -0.359 6.359 19 Si 0.681 3.319 20 C -0.129 4.129 21 C -0.178 4.178 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.110 4.110 25 H 0.107 0.893 26 C -0.214 4.214 27 C -0.139 4.139 28 C -0.168 4.168 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.265 0.735 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.235 0.765 41 H -0.237 1.237 42 H -0.198 1.198 43 H 0.174 0.826 44 H 0.193 0.807 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.067 0.933 52 H 0.084 0.916 53 H 0.092 0.908 54 H 0.086 0.914 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.504 1.608 6.262 7.880 hybrid contribution 0.076 -0.394 -1.148 1.216 sum 4.581 1.214 5.114 6.972 Atomic orbital electron populations 1.23423 0.76560 1.04689 1.02151 1.86894 1.23427 1.32095 1.82359 1.24855 0.93212 0.81484 0.71297 1.90661 1.67608 1.37304 1.46864 1.20161 0.83171 0.89861 0.94996 1.45670 1.54875 1.03223 1.32407 1.20475 0.80369 0.84072 0.85422 1.90788 1.36540 1.84079 1.28073 1.22717 1.02499 0.80715 0.98150 1.86223 1.71214 1.12176 1.52666 1.18559 0.98453 0.84103 0.94555 1.18662 0.96163 0.92236 0.89816 1.86188 1.64984 1.32049 1.41493 1.23266 1.01214 0.81910 1.00960 1.21011 1.01437 0.96755 0.97915 1.20094 0.99368 0.95761 0.96483 1.25307 0.98897 0.93460 1.01661 1.86571 1.37412 1.44711 1.67203 0.93970 0.81859 0.78844 0.77269 1.21034 1.00611 0.90807 1.00448 1.21371 0.99963 1.01706 0.94806 1.21814 0.98648 0.92409 1.02069 1.21620 0.91912 1.04310 0.96635 1.21159 1.00997 0.93846 0.95016 0.89349 1.21987 1.00837 0.98575 1.00020 1.21473 0.92229 0.98359 1.01795 1.21954 0.98669 1.03183 0.92983 0.91637 0.92538 0.86807 0.73483 0.85511 0.85842 0.91645 0.87182 0.92048 0.84253 0.86158 0.76455 1.23710 1.19838 0.82622 0.80719 0.89618 0.89767 0.89317 0.89401 0.91872 0.92974 0.93264 0.91556 0.90796 0.91419 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.35 16 2 O -0.33 -3.46 6.73 -43.63 -0.29 -3.75 16 3 C 0.45 3.92 6.71 71.24 0.48 4.40 16 4 O -0.53 -7.10 15.84 21.96 0.35 -6.75 16 5 C 0.21 0.17 0.63 2.86 0.00 0.18 16 6 N -0.70 3.04 4.03 -426.33 -1.72 1.32 16 7 C 0.51 0.83 6.84 87.66 0.60 1.43 16 8 O -0.52 -6.35 11.75 26.90 0.32 -6.03 16 9 C 0.04 -0.15 5.22 71.24 0.37 0.22 16 10 O -0.31 -2.02 9.45 -67.10 -0.63 -2.65 16 11 C 0.09 0.36 6.70 22.57 0.15 0.51 16 12 C 0.08 0.53 6.70 22.57 0.15 0.68 16 13 O -0.33 -3.33 10.28 -79.58 -0.82 -4.15 16 14 C 0.02 0.04 9.81 113.37 1.11 1.15 16 15 C -0.15 -0.46 8.67 22.35 0.19 -0.26 16 16 C -0.12 0.08 5.35 -19.86 -0.11 -0.03 16 17 C -0.09 0.15 2.80 71.24 0.20 0.35 16 18 O -0.55 -0.94 12.83 -148.98 -1.91 -2.85 16 19 Si 0.78 -3.45 29.88 68.60 2.05 -1.40 16 20 C -0.11 0.45 8.66 22.27 0.19 0.64 16 21 C -0.16 0.59 9.04 22.35 0.20 0.79 16 22 C -0.11 0.39 4.04 30.59 0.12 0.52 16 23 C -0.11 0.93 5.28 30.60 0.16 1.09 16 24 C -0.09 0.53 3.19 -10.79 -0.03 0.50 16 25 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 26 C -0.16 0.48 8.50 71.98 0.61 1.10 16 27 C -0.10 0.27 5.29 30.61 0.16 0.43 16 28 C -0.13 -0.34 4.23 30.61 0.13 -0.21 16 29 H 0.06 0.30 8.13 -2.39 -0.02 0.28 16 30 H 0.06 0.39 8.13 -2.39 -0.02 0.37 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.43 -5.35 7.32 -92.70 -0.68 -6.03 16 33 H 0.13 -1.44 7.66 -2.39 -0.02 -1.46 16 34 H 0.12 -1.30 7.66 -2.39 -0.02 -1.31 16 35 H 0.06 -0.05 7.68 -2.38 -0.02 -0.06 16 36 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.06 0.00 7.65 -2.39 -0.02 -0.01 16 38 H 0.14 0.24 6.30 -2.91 -0.02 0.23 16 39 H 0.12 -0.34 7.96 -2.39 -0.02 -0.36 16 40 H 0.39 -1.55 8.70 -74.06 -0.64 -2.19 16 41 H -0.31 -1.28 7.11 99.48 0.71 -0.58 16 42 H -0.27 0.61 7.01 99.48 0.70 1.30 16 43 H 0.16 -1.43 4.83 -2.91 -0.01 -1.44 16 44 H 0.18 -2.08 6.30 -2.91 -0.02 -2.10 16 45 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.08 0.00 6.16 -2.39 -0.01 -0.01 16 47 H 0.09 -1.15 6.86 -2.39 -0.02 -1.16 16 48 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 49 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 50 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 51 H 0.05 -0.02 4.81 -2.39 -0.01 -0.03 16 52 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 53 H 0.07 -0.31 7.60 -2.39 -0.02 -0.33 16 54 H 0.07 0.59 6.17 -2.39 -0.01 0.58 16 55 H 0.07 0.29 6.43 -2.39 -0.02 0.28 16 Total: 0.00 -30.68 424.62 2.89 -27.79 By element: Atomic # 1 Polarization: -16.02 SS G_CDS: -0.35 Total: -16.37 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.90 Total: 14.84 kcal Atomic # 7 Polarization: 3.04 SS G_CDS: -1.72 Total: 1.32 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -2.99 Total: -26.18 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.05 Total: -1.40 kcal Total: -30.68 2.89 -27.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11976204_60476.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.786 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds