Wall clock time and date at job start Sat Mar 6 2021 18:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39288 * 121.02795 * 2 1 4 4 C 1.46505 * 134.20287 * 359.34325 * 3 2 1 5 5 C 1.50697 * 126.59926 * 0.71855 * 4 3 2 6 6 O 1.42893 * 109.46972 * 284.71648 * 5 4 3 7 7 Si 1.86292 * 109.47077 * 164.71341 * 5 4 3 8 8 C 1.34178 * 106.79933 * 180.46088 * 4 3 2 9 9 N 1.36941 * 109.95464 * 0.22244 * 8 4 3 10 10 C 1.37156 * 110.11725 * 0.02562 * 9 8 4 11 11 N 1.32816 * 132.96778 * 179.97438 * 10 9 8 12 12 C 1.31303 * 121.89642 * 179.97438 * 11 10 9 13 13 C 1.39748 * 121.03070 * 179.73591 * 2 1 3 14 14 C 1.47657 * 120.45412 * 0.02562 * 13 2 1 15 15 O 1.21574 * 119.99957 * 354.05986 * 14 13 2 16 16 N 1.34784 * 119.99935 * 174.06309 * 14 13 2 17 17 C 1.46498 * 119.99947 * 179.97438 * 16 14 13 18 18 H 1.08998 * 112.84901 * 334.66592 * 17 16 14 19 19 C 1.53783 * 113.61310 * 105.86350 * 17 16 14 20 20 C 1.54044 * 86.98392 * 89.16143 * 19 17 16 21 21 H 1.09000 * 113.69060 * 270.87252 * 20 19 17 22 22 O 1.42905 * 113.61834 * 139.97981 * 20 19 17 23 23 C 1.35901 * 117.00056 * 106.27709 * 22 20 19 24 24 C 1.38735 * 120.05381 * 174.32172 * 23 22 20 25 25 C 1.38139 * 119.93911 * 179.74530 * 24 23 22 26 26 C 1.38265 * 120.06132 * 0.50736 * 25 24 23 27 27 C 1.38264 * 120.10875 * 359.76523 * 26 25 24 28 28 C 1.38150 * 120.05471 * 359.97438 * 27 26 25 29 29 C 1.53781 * 113.61564 * 203.47168 * 17 16 14 30 30 H 1.08998 * 109.47214 * 263.78169 * 1 2 3 31 31 H 1.09006 * 109.47413 * 23.78592 * 1 2 3 32 32 H 1.09005 * 109.47043 * 143.78231 * 1 2 3 33 33 H 1.09008 * 109.46869 * 44.71298 * 5 4 3 34 34 H 0.96709 * 114.00104 * 179.97438 * 6 5 4 35 35 H 1.48505 * 110.00165 * 298.68191 * 7 5 4 36 36 H 1.48498 * 110.00174 * 60.00211 * 7 5 4 37 37 H 1.08002 * 125.02237 * 180.20591 * 8 4 3 38 38 H 0.97004 * 124.94392 * 180.02562 * 9 8 4 39 39 H 1.08005 * 119.31693 * 180.02562 * 12 11 10 40 40 H 0.96997 * 119.99822 * 359.97438 * 16 14 13 41 41 H 1.08999 * 113.60884 * 203.66446 * 19 17 16 42 42 H 1.09004 * 113.61548 * 334.56473 * 19 17 16 43 43 H 1.08000 * 120.02953 * 359.97438 * 24 23 22 44 44 H 1.08008 * 119.97154 * 180.23545 * 25 24 23 45 45 H 1.07995 * 119.94725 * 179.74545 * 26 25 24 46 46 H 1.07999 * 119.97184 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.02761 * 179.97438 * 28 27 26 48 48 H 1.09005 * 113.61304 * 25.42986 * 29 17 16 49 49 H 1.08997 * 113.61225 * 156.33560 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1936 0.0000 4 6 1.8515 2.6102 -0.0120 5 6 0.4526 3.1706 -0.0139 6 8 -0.1198 3.0182 -1.3143 7 14 0.5074 4.9784 0.4326 8 6 2.9948 3.3126 -0.0153 9 7 4.0668 2.4605 -0.0113 10 6 3.6347 1.1588 -0.0058 11 7 4.2719 -0.0065 -0.0011 12 6 3.6267 -1.1501 0.0043 13 6 2.2274 -1.1975 0.0055 14 6 1.5225 -2.4949 0.0109 15 8 0.3121 -2.5286 0.1196 16 7 2.2210 -3.6418 -0.1045 17 6 1.5217 -4.9291 -0.0986 18 1 0.5652 -4.8888 0.4226 19 6 1.4411 -5.5927 -1.4835 20 6 2.7879 -6.2624 -1.1510 21 1 3.6553 -5.6703 -1.4428 22 8 2.8734 -7.6220 -1.5830 23 6 3.6525 -7.8771 -2.6668 24 6 3.8756 -9.1859 -3.0695 25 6 4.6636 -9.4423 -4.1747 26 6 5.2384 -8.3966 -4.8732 27 6 5.0222 -7.0917 -4.4705 28 6 4.2305 -6.8297 -3.3691 29 6 2.4082 -6.1098 0.3314 30 1 -0.3633 -0.1113 1.0216 31 1 -0.3634 0.9404 -0.4145 32 1 -0.3633 -0.8291 -0.6072 33 1 -0.1546 2.6344 0.7155 34 1 -1.0222 3.3577 -1.3891 35 1 1.0714 5.1481 1.7959 36 1 1.3322 5.7206 -0.5543 37 1 3.0599 4.3906 -0.0206 38 1 4.9965 2.7373 -0.0122 39 1 4.1870 -2.0734 0.0084 40 1 3.1867 -3.6149 -0.1915 41 1 0.6156 -6.2976 -1.5824 42 1 1.4961 -4.8850 -2.3107 43 1 3.4305 -10.0033 -2.5216 44 1 4.8345 -10.4608 -4.4909 45 1 5.8575 -8.5994 -5.7345 46 1 5.4726 -6.2766 -5.0175 47 1 4.0622 -5.8102 -3.0547 48 1 3.2436 -5.8192 0.9684 49 1 1.8466 -6.9558 0.7276 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_12890568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:55:54 Heat of formation + Delta-G solvation = 39.678797 kcal Electronic energy + Delta-G solvation = -33846.955622 eV Core-core repulsion = 29322.055317 eV Total energy + Delta-G solvation = -4524.900305 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.97937 -41.77997 -40.88265 -39.55782 -38.70766 -37.74313 -37.48095 -35.18440 -34.32608 -32.14930 -31.95489 -31.13126 -30.61166 -28.96367 -26.88046 -26.69671 -26.10743 -24.79551 -24.13078 -23.52087 -22.92540 -22.14921 -20.58439 -20.48023 -19.58302 -19.29709 -18.75032 -18.32452 -17.70810 -17.45869 -17.10230 -16.79184 -16.67776 -16.60298 -16.29717 -15.88440 -15.64814 -15.41975 -15.33790 -15.16100 -15.06387 -14.74534 -14.41081 -14.26901 -14.17269 -14.03141 -13.80640 -13.71960 -13.58597 -13.51966 -13.36670 -13.16021 -12.96191 -12.60983 -12.60583 -12.46442 -11.97854 -11.92837 -11.53214 -11.33758 -11.25320 -11.16573 -10.54772 -10.25504 -10.16871 -9.97693 -9.74651 -9.27919 -9.16956 -4.91734 -0.44285 -0.19795 0.36741 0.46661 1.23184 1.33509 1.51101 1.69289 1.74123 1.90835 1.98619 2.22687 2.65847 2.81502 3.18625 3.30623 3.33277 3.39185 3.45524 3.58383 3.61255 3.71130 3.73794 3.83401 3.90900 3.99750 4.01103 4.04548 4.21535 4.23952 4.31729 4.40510 4.47602 4.52628 4.54993 4.63595 4.67672 4.69141 4.71984 4.74576 4.78833 4.89119 4.92538 4.94075 5.06429 5.08695 5.20725 5.30269 5.34474 5.45679 5.47627 5.59573 5.60427 5.84969 6.05598 6.36830 6.46890 6.70469 6.96781 7.08083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.069 3.931 3 C -0.169 4.169 4 C -0.156 4.156 5 C -0.055 4.055 6 O -0.563 6.563 7 Si 0.785 3.215 8 C 0.065 3.935 9 N -0.562 5.562 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.184 3.816 13 C -0.241 4.241 14 C 0.578 3.422 15 O -0.557 6.557 16 N -0.699 5.699 17 C 0.127 3.873 18 H 0.104 0.896 19 C -0.164 4.164 20 C 0.050 3.950 21 H 0.114 0.886 22 O -0.314 6.314 23 C 0.112 3.888 24 C -0.172 4.172 25 C -0.087 4.087 26 C -0.169 4.169 27 C -0.089 4.089 28 C -0.218 4.218 29 C -0.125 4.125 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.401 0.599 35 H -0.288 1.288 36 H -0.281 1.281 37 H 0.199 0.801 38 H 0.437 0.563 39 H 0.198 0.802 40 H 0.413 0.587 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.141 0.859 48 H 0.102 0.898 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 3.500 0.581 3.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 C -0.176 4.176 4 C -0.164 4.164 5 C -0.164 4.164 6 O -0.373 6.373 7 Si 0.688 3.312 8 C -0.061 4.061 9 N -0.168 5.168 10 C 0.056 3.944 11 N -0.230 5.230 12 C 0.015 3.985 13 C -0.248 4.248 14 C 0.366 3.634 15 O -0.436 6.436 16 N -0.351 5.351 17 C 0.022 3.978 18 H 0.122 0.878 19 C -0.203 4.203 20 C -0.006 4.006 21 H 0.132 0.868 22 O -0.228 6.228 23 C 0.067 3.933 24 C -0.191 4.191 25 C -0.105 4.105 26 C -0.187 4.187 27 C -0.107 4.107 28 C -0.237 4.237 29 C -0.162 4.162 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.252 0.748 35 H -0.215 1.215 36 H -0.207 1.207 37 H 0.215 0.785 38 H 0.278 0.722 39 H 0.214 0.786 40 H 0.251 0.749 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.121 0.879 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.871 3.923 0.882 4.435 hybrid contribution 0.457 -0.329 -0.172 0.589 sum 2.327 3.595 0.710 4.341 Atomic orbital electron populations 1.21144 0.88636 1.04528 1.03512 1.20131 0.97655 0.89680 0.86476 1.19733 0.93259 0.94201 1.10389 1.20007 0.94889 0.90326 1.11148 1.24347 0.90395 1.12769 0.88939 1.86487 1.35523 1.86132 1.29177 0.93767 0.88731 0.72690 0.76044 1.22018 0.85030 0.96502 1.02576 1.41517 1.10264 1.02035 1.63020 1.18765 0.89640 0.86649 0.99366 1.66519 1.40818 0.96314 1.19306 1.23049 0.89868 0.95208 0.90392 1.20491 0.95343 0.93385 1.15601 1.17866 0.86439 0.83664 0.75425 1.90751 1.14819 1.87350 1.50701 1.45441 1.11063 1.04294 1.74292 1.21520 0.97478 0.81746 0.97075 0.87757 1.24037 0.98400 0.99696 0.98212 1.24487 0.98587 0.80921 0.96556 0.86841 1.86150 1.63716 1.29739 1.43188 1.19255 0.91671 0.94471 0.87856 1.20723 1.03625 0.94534 1.00208 1.21300 0.94930 1.00637 0.93585 1.21417 1.02565 0.92772 1.01931 1.21295 0.96269 0.97752 0.95366 1.21469 1.03664 0.99076 0.99459 1.23549 1.00715 0.97564 0.94412 0.90012 0.89385 0.89734 0.90038 0.74770 1.21503 1.20749 0.78459 0.72184 0.78571 0.74907 0.88310 0.90807 0.84910 0.83569 0.84214 0.84080 0.84161 0.87943 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 8.46 71.24 0.60 -0.20 16 2 C 0.07 0.56 5.98 -19.25 -0.12 0.44 16 3 C -0.17 -1.39 6.16 -20.19 -0.12 -1.51 16 4 C -0.16 -0.75 5.61 -18.64 -0.10 -0.85 16 5 C -0.06 0.04 1.87 71.23 0.13 0.18 16 6 O -0.56 0.27 11.64 -148.98 -1.73 -1.47 16 7 Si 0.78 -3.87 30.80 68.60 2.11 -1.76 16 8 C 0.07 0.11 10.44 82.97 0.87 0.97 16 9 N -0.56 -1.13 6.04 -192.25 -1.16 -2.29 16 10 C 0.29 2.10 8.42 134.03 1.13 3.23 16 11 N -0.52 -3.25 10.37 -191.74 -1.99 -5.24 16 12 C 0.18 0.37 10.67 85.20 0.91 1.28 16 13 C -0.24 -1.25 5.89 -19.99 -0.12 -1.37 16 14 C 0.58 2.79 7.72 86.73 0.67 3.46 16 15 O -0.56 -6.23 13.12 -3.95 -0.05 -6.28 16 16 N -0.70 1.52 5.22 -443.08 -2.31 -0.79 16 17 C 0.13 -0.21 4.30 45.52 0.20 -0.01 16 18 H 0.10 0.17 7.50 -2.39 -0.02 0.15 16 19 C -0.16 0.10 7.73 31.21 0.24 0.34 16 20 C 0.05 -0.09 3.60 31.21 0.11 0.02 16 21 H 0.11 -0.57 5.92 -2.39 -0.01 -0.59 16 22 O -0.31 -1.29 10.15 -92.44 -0.94 -2.23 16 23 C 0.11 0.55 6.68 22.51 0.15 0.70 16 24 C -0.17 -0.75 9.99 22.37 0.22 -0.53 16 25 C -0.09 -0.17 10.04 22.25 0.22 0.06 16 26 C -0.17 -0.23 10.04 22.28 0.22 0.00 16 27 C -0.09 -0.12 10.04 22.26 0.22 0.10 16 28 C -0.22 -0.50 9.02 22.37 0.20 -0.30 16 29 C -0.12 0.55 7.65 31.12 0.24 0.79 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.39 4.78 -2.38 -0.01 0.38 16 32 H 0.08 0.81 5.97 -2.38 -0.01 0.80 16 33 H 0.08 -0.22 7.13 -2.38 -0.02 -0.23 16 34 H 0.40 -4.37 8.74 -74.05 -0.65 -5.02 16 35 H -0.29 -0.17 7.11 99.48 0.71 0.53 16 36 H -0.28 0.04 7.04 99.48 0.70 0.74 16 37 H 0.20 -0.73 6.31 -2.91 -0.02 -0.75 16 38 H 0.44 -1.64 8.96 -92.71 -0.83 -2.47 16 39 H 0.20 -1.36 6.43 -2.91 -0.02 -1.38 16 40 H 0.41 -3.35 6.78 -92.71 -0.63 -3.98 16 41 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 43 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 44 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16 45 H 0.14 -0.36 8.06 -2.91 -0.02 -0.39 16 46 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 47 H 0.14 -0.23 5.90 -2.91 -0.02 -0.24 16 48 H 0.10 -0.77 8.14 -2.38 -0.02 -0.79 16 49 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: 0.00 -25.70 399.13 -1.21 -26.91 By element: Atomic # 1 Polarization: -12.64 SS G_CDS: -1.02 Total: -13.66 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.88 Total: 6.80 kcal Atomic # 7 Polarization: -2.86 SS G_CDS: -5.46 Total: -8.32 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -2.72 Total: -9.97 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.11 Total: -1.76 kcal Total: -25.70 -1.21 -26.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_12890568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.593 kcal (2) G-P(sol) polarization free energy of solvation -25.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds