Wall clock time and date at job start Sat Mar 6 2021 18:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47124 * 2 1 4 4 C 1.50701 * 109.47502 * 120.00132 * 2 1 3 5 5 C 1.38337 * 119.87111 * 64.99572 * 4 2 1 6 6 C 1.38001 * 120.12783 * 180.02562 * 5 4 2 7 7 C 1.39409 * 119.86774 * 359.97438 * 6 5 4 8 8 C 1.48278 * 120.12231 * 180.02562 * 7 6 5 9 9 C 1.39507 * 119.97414 * 180.02562 * 8 7 6 10 10 C 1.37657 * 120.02282 * 180.02562 * 9 8 7 11 11 C 1.39711 * 119.97958 * 359.97438 * 10 9 8 12 12 C 1.47719 * 120.02359 * 180.02562 * 11 10 9 13 13 O 1.21566 * 120.00186 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99714 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99986 * 180.02562 * 14 12 11 16 16 H 1.08999 * 112.85120 * 336.19797 * 15 14 12 17 17 C 1.53786 * 113.61313 * 107.50565 * 15 14 12 18 18 C 1.53783 * 87.08190 * 139.98136 * 17 15 14 19 19 H 1.08993 * 113.69456 * 220.01294 * 18 17 15 20 20 O 1.42905 * 113.61425 * 89.11216 * 18 17 15 21 21 C 1.35895 * 116.99548 * 105.83488 * 20 18 17 22 22 C 1.38735 * 120.05903 * 354.29751 * 21 20 18 23 23 C 1.38145 * 119.94741 * 180.02562 * 22 21 20 24 24 C 1.38269 * 120.05426 * 0.02562 * 23 22 21 25 25 C 1.38267 * 120.11102 * 0.24976 * 24 23 22 26 26 C 1.38153 * 120.05397 * 359.45116 * 25 24 23 27 27 C 1.53784 * 113.61439 * 205.00115 * 15 14 12 28 28 C 1.39703 * 119.94736 * 0.27638 * 11 10 9 29 29 C 1.37663 * 119.97799 * 359.42545 * 28 11 10 30 30 C 1.39402 * 119.74562 * 0.27792 * 7 6 5 31 31 C 1.37995 * 119.87203 * 359.49001 * 30 7 6 32 32 H 0.96699 * 114.00441 * 299.99317 * 1 2 3 33 33 H 1.09003 * 109.47487 * 240.00463 * 2 1 3 34 34 H 1.48504 * 110.00220 * 300.00155 * 3 2 1 35 35 H 1.48499 * 109.99892 * 61.31636 * 3 2 1 36 36 H 1.07997 * 119.93314 * 0.02562 * 5 4 2 37 37 H 1.07994 * 120.06383 * 179.97438 * 6 5 4 38 38 H 1.08006 * 119.98550 * 359.97438 * 9 8 7 39 39 H 1.08011 * 120.01223 * 180.02562 * 10 9 8 40 40 H 0.97003 * 119.99729 * 0.02562 * 14 12 11 41 41 H 1.09001 * 113.61231 * 25.43367 * 17 15 14 42 42 H 1.08995 * 113.61144 * 254.52551 * 17 15 14 43 43 H 1.07997 * 120.02389 * 0.03657 * 22 21 20 44 44 H 1.07997 * 119.97356 * 179.97438 * 23 22 21 45 45 H 1.07993 * 119.94667 * 179.97438 * 24 23 22 46 46 H 1.07998 * 119.96978 * 179.70462 * 25 24 23 47 47 H 1.07999 * 120.02433 * 180.29637 * 26 25 24 48 48 H 1.09001 * 113.61238 * 105.47464 * 27 15 14 49 49 H 1.08996 * 113.69162 * 334.58259 * 27 15 14 50 50 H 1.08001 * 120.01066 * 179.72526 * 28 11 10 51 51 H 1.08003 * 119.99457 * 180.29541 * 29 28 11 52 52 H 1.08006 * 120.06064 * 179.70227 * 30 7 6 53 53 H 1.08002 * 119.93232 * 180.23747 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6831 -2.0612 1.3958 6 6 2.1402 -2.7170 2.5207 7 6 2.8540 -2.0155 3.4912 8 6 3.3483 -2.7145 4.7018 9 6 4.0618 -2.0094 5.6713 10 6 4.5217 -2.6575 6.7953 11 6 4.2732 -4.0218 6.9654 12 6 4.7657 -4.7181 8.1715 13 8 5.3871 -4.1039 9.0168 14 7 4.5252 -6.0341 8.3352 15 6 5.0132 -6.7246 9.5316 16 1 5.8667 -6.2251 9.9900 17 6 3.9010 -7.0886 10.5294 18 6 4.6358 -8.4229 10.7409 19 1 3.9693 -9.2810 10.8273 20 8 5.6188 -8.3770 11.7771 21 6 5.3105 -8.9949 12.9476 22 6 4.0446 -9.5293 13.1389 23 6 3.7335 -10.1565 14.3298 24 6 4.6825 -10.2515 15.3309 25 6 5.9431 -9.7147 15.1449 26 6 6.2610 -9.0919 13.9534 27 6 5.2186 -8.2352 9.3302 28 6 3.5631 -4.7280 5.9914 29 6 3.0988 -4.0766 4.8709 30 6 3.0966 -0.6532 3.3216 31 6 2.6387 -0.0092 2.1904 32 1 -0.3934 0.4416 0.7651 33 1 1.7924 -0.5138 -0.8900 34 1 1.5614 2.4679 -1.2085 35 1 1.5878 2.4585 1.2242 36 1 1.1303 -2.6036 0.6430 37 1 1.9454 -3.7714 2.6489 38 1 4.2542 -0.9548 5.5395 39 1 5.0737 -2.1113 7.5461 40 1 4.0291 -6.5240 7.6608 41 1 2.9196 -7.1989 10.0681 42 1 3.8846 -6.4540 11.4154 43 1 3.3030 -9.4552 12.3573 44 1 2.7481 -10.5723 14.4793 45 1 4.4374 -10.7418 16.2614 46 1 6.6811 -9.7860 15.9302 47 1 7.2473 -8.6771 13.8068 48 1 6.2659 -8.5263 9.2482 49 1 4.5982 -8.6603 8.5413 50 1 3.3743 -5.7836 6.1196 51 1 2.5457 -4.6213 4.1201 52 1 3.6449 -0.1038 4.0726 53 1 2.8295 1.0454 2.0562 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_13158362.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:55:58 Heat of formation + Delta-G solvation = 19.900648 kcal Electronic energy + Delta-G solvation = -34430.509208 eV Core-core repulsion = 29779.150799 eV Total energy + Delta-G solvation = -4651.358409 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.166 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.85628 -41.26738 -40.68024 -39.66190 -39.01619 -37.65490 -37.35825 -34.70098 -33.78847 -32.55145 -31.95517 -31.57493 -30.88124 -30.58790 -27.30402 -26.88075 -26.06242 -24.66550 -24.40917 -23.48278 -23.27542 -22.59028 -22.25813 -21.35993 -20.82842 -19.48394 -19.05214 -18.48202 -17.85225 -17.54743 -17.11538 -16.91833 -16.74390 -16.40377 -16.35441 -16.18201 -16.04767 -15.86817 -15.47372 -15.38516 -15.34129 -15.03866 -14.98225 -14.86735 -14.39491 -14.28224 -14.26764 -14.05245 -13.97083 -13.66152 -13.55748 -13.50337 -13.21130 -13.16075 -12.78457 -12.61315 -12.57084 -12.49728 -12.09378 -12.07055 -11.93866 -11.52794 -11.49432 -11.39093 -11.09413 -10.77659 -10.59304 -10.18224 -10.06606 -9.98125 -9.94923 -9.19800 -9.08061 -4.93490 -0.69687 0.34833 0.36209 0.40944 0.45222 0.49679 1.29867 1.57686 1.75538 1.94260 2.03864 2.07587 2.59468 2.80513 3.00211 3.29592 3.38190 3.40604 3.45716 3.62720 3.64803 3.69999 3.78508 3.84995 3.87609 3.90202 3.99387 4.01986 4.05036 4.15799 4.26682 4.28457 4.30861 4.37411 4.47046 4.52382 4.54917 4.60199 4.64066 4.64950 4.69377 4.71873 4.81211 4.89423 4.91819 4.92192 4.97296 5.06076 5.08856 5.13876 5.20769 5.26335 5.32874 5.41164 5.41726 5.46341 5.50287 5.58781 5.65554 5.79477 5.84646 5.93673 6.43387 6.44194 6.46362 7.10639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.081 4.081 3 Si 0.761 3.239 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.106 4.106 7 C -0.059 4.059 8 C -0.022 4.022 9 C -0.123 4.123 10 C -0.072 4.072 11 C -0.153 4.153 12 C 0.555 3.445 13 O -0.584 6.584 14 N -0.699 5.699 15 C 0.121 3.879 16 H 0.087 0.913 17 C -0.164 4.164 18 C 0.052 3.948 19 H 0.116 0.884 20 O -0.314 6.314 21 C 0.111 3.889 22 C -0.215 4.215 23 C -0.088 4.088 24 C -0.167 4.167 25 C -0.087 4.087 26 C -0.175 4.175 27 C -0.124 4.124 28 C -0.072 4.072 29 C -0.119 4.119 30 C -0.108 4.108 31 C -0.122 4.122 32 H 0.386 0.614 33 H 0.126 0.874 34 H -0.305 1.305 35 H -0.283 1.283 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.125 0.875 40 H 0.418 0.582 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.129 0.871 48 H 0.083 0.917 49 H 0.141 0.859 50 H 0.161 0.839 51 H 0.158 0.842 52 H 0.144 0.856 53 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -4.915 -3.124 6.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.190 4.190 3 Si 0.667 3.333 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.059 4.059 8 C -0.023 4.023 9 C -0.141 4.141 10 C -0.091 4.091 11 C -0.156 4.156 12 C 0.344 3.656 13 O -0.466 6.466 14 N -0.351 5.351 15 C 0.016 3.984 16 H 0.105 0.895 17 C -0.202 4.202 18 C -0.005 4.005 19 H 0.133 0.867 20 O -0.228 6.228 21 C 0.066 3.934 22 C -0.233 4.233 23 C -0.105 4.105 24 C -0.185 4.185 25 C -0.105 4.105 26 C -0.194 4.194 27 C -0.162 4.162 28 C -0.090 4.090 29 C -0.137 4.137 30 C -0.126 4.126 31 C -0.140 4.140 32 H 0.235 0.765 33 H 0.144 0.856 34 H -0.233 1.233 35 H -0.210 1.210 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.143 0.857 40 H 0.258 0.742 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.147 0.853 48 H 0.102 0.898 49 H 0.159 0.841 50 H 0.179 0.821 51 H 0.176 0.824 52 H 0.162 0.838 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.904 -3.886 -3.131 5.342 hybrid contribution -1.188 0.068 0.508 1.293 sum -3.092 -3.819 -2.623 5.570 Atomic orbital electron populations 1.86577 1.18474 1.80338 1.50183 1.25191 0.83428 1.11546 0.98878 0.94078 0.90480 0.72465 0.76255 1.20439 0.99266 0.95118 0.96716 1.21126 0.98908 0.93901 0.97942 1.21529 0.96773 1.01065 0.93037 1.18936 0.99214 0.93797 0.93994 1.19162 0.95972 0.94023 0.93101 1.21374 0.98324 1.01233 0.93120 1.21256 0.96983 0.93526 0.97353 1.19983 1.04490 0.95163 0.95932 1.18664 0.78477 0.82608 0.85818 1.90780 1.42770 1.67212 1.45793 1.45742 1.56996 1.08520 1.23815 1.22477 0.97376 0.92709 0.85884 0.89530 1.24028 0.99934 0.96533 0.99743 1.23349 0.90954 0.99179 0.86996 0.86681 1.86068 1.43875 1.71468 1.21379 1.19253 0.94182 0.93592 0.86359 1.21517 0.96229 1.04810 1.00787 1.21333 1.00316 0.96522 0.92377 1.21440 0.93859 1.02543 1.00675 1.21289 0.97520 0.95478 0.96226 1.20711 0.99727 1.05202 0.93712 1.23611 1.04202 0.93192 0.95159 1.21484 0.94525 1.00939 0.92098 1.21488 1.00274 0.93436 0.98486 1.21466 0.99379 0.93762 0.97970 1.21163 0.98460 1.00402 0.93931 0.76505 0.85591 1.23317 1.20959 0.84835 0.83449 0.83536 0.85711 0.74240 0.85783 0.92281 0.83559 0.83642 0.84039 0.83636 0.85325 0.89841 0.84140 0.82121 0.82436 0.83842 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.79 12.83 -148.98 -1.91 -2.70 16 2 C -0.08 0.15 2.80 71.24 0.20 0.35 16 3 Si 0.76 -1.92 29.87 68.60 2.05 0.13 16 4 C -0.12 0.19 5.36 -19.82 -0.11 0.08 16 5 C -0.10 0.17 9.67 22.24 0.21 0.38 16 6 C -0.11 0.29 9.43 22.50 0.21 0.50 16 7 C -0.06 0.08 5.88 -20.04 -0.12 -0.04 16 8 C -0.02 0.02 5.88 -19.99 -0.12 -0.09 16 9 C -0.12 -0.04 9.41 22.44 0.21 0.17 16 10 C -0.07 -0.28 9.58 22.49 0.22 -0.06 16 11 C -0.15 -0.37 5.88 -20.06 -0.12 -0.49 16 12 C 0.56 3.50 7.77 86.75 0.67 4.17 16 13 O -0.58 -9.45 15.93 -3.92 -0.06 -9.51 16 14 N -0.70 1.02 5.30 -443.02 -2.35 -1.33 16 15 C 0.12 0.08 4.17 45.52 0.19 0.27 16 16 H 0.09 0.74 7.46 -2.39 -0.02 0.72 16 17 C -0.16 0.21 7.71 31.12 0.24 0.45 16 18 C 0.05 -0.10 3.75 31.12 0.12 0.02 16 19 H 0.12 -0.68 5.96 -2.39 -0.01 -0.70 16 20 O -0.31 -1.77 10.06 -92.37 -0.93 -2.70 16 21 C 0.11 0.63 6.68 22.51 0.15 0.78 16 22 C -0.22 -0.44 9.02 22.37 0.20 -0.24 16 23 C -0.09 -0.07 10.04 22.26 0.22 0.15 16 24 C -0.17 -0.21 10.04 22.28 0.22 0.01 16 25 C -0.09 -0.22 10.04 22.26 0.22 0.00 16 26 C -0.17 -0.98 9.99 22.37 0.22 -0.76 16 27 C -0.12 0.63 7.66 31.12 0.24 0.87 16 28 C -0.07 0.31 9.52 22.49 0.21 0.52 16 29 C -0.12 0.50 9.41 22.44 0.21 0.72 16 30 C -0.11 0.22 9.43 22.49 0.21 0.43 16 31 C -0.12 0.30 8.65 22.23 0.19 0.49 16 32 H 0.39 -1.49 8.70 -74.06 -0.64 -2.13 16 33 H 0.13 -0.44 7.96 -2.39 -0.02 -0.46 16 34 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 35 H -0.28 -0.33 7.00 99.48 0.70 0.36 16 36 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 37 H 0.15 -1.09 6.19 -2.91 -0.02 -1.10 16 38 H 0.15 -0.50 6.19 -2.91 -0.02 -0.52 16 39 H 0.12 0.75 7.64 -2.90 -0.02 0.72 16 40 H 0.42 -3.95 6.75 -92.71 -0.63 -4.57 16 41 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.15 -0.39 5.92 -2.91 -0.02 -0.41 16 44 H 0.15 -0.58 8.06 -2.91 -0.02 -0.61 16 45 H 0.14 -0.41 8.06 -2.91 -0.02 -0.44 16 46 H 0.15 -0.26 8.06 -2.91 -0.02 -0.28 16 47 H 0.13 0.59 8.06 -2.91 -0.02 0.57 16 48 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 49 H 0.14 -1.72 8.12 -2.39 -0.02 -1.74 16 50 H 0.16 -1.91 6.39 -2.91 -0.02 -1.93 16 51 H 0.16 -1.50 6.19 -2.91 -0.02 -1.52 16 52 H 0.14 -0.76 6.19 -2.91 -0.02 -0.78 16 53 H 0.14 -0.76 4.82 -2.91 -0.01 -0.78 16 Total: 0.00 -25.95 435.05 0.67 -25.28 By element: Atomic # 1 Polarization: -17.62 SS G_CDS: -0.26 Total: -17.87 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.13 Total: 8.70 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -2.35 Total: -1.33 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -2.90 Total: -14.91 kcal Atomic # 14 Polarization: -1.92 SS G_CDS: 2.05 Total: 0.13 kcal Total: -25.95 0.67 -25.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13158362.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.179 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds