Wall clock time and date at job start Sat Mar 6 2021 18:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47532 * 2 1 4 4 C 1.50702 * 109.47193 * 120.00650 * 2 1 3 5 5 C 1.34709 * 125.66293 * 64.99351 * 4 2 1 6 6 C 1.40967 * 107.02658 * 179.72882 * 5 4 2 7 7 C 1.35944 * 106.74279 * 0.40607 * 6 5 4 8 8 C 1.47811 * 125.93291 * 179.85224 * 7 6 5 9 9 C 1.39171 * 120.00353 * 179.97438 * 8 7 6 10 10 C 1.39460 * 119.76021 * 180.27919 * 9 8 7 11 11 C 1.47562 * 120.12487 * 179.77005 * 10 9 8 12 12 O 1.21584 * 120.00365 * 179.72478 * 11 10 9 13 13 N 1.34782 * 119.99601 * 359.71975 * 11 10 9 14 14 C 1.46504 * 119.99861 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.84933 * 336.19822 * 14 13 11 16 16 C 1.53777 * 113.61142 * 107.50472 * 14 13 11 17 17 C 1.53781 * 87.08198 * 139.98330 * 16 14 13 18 18 H 1.08998 * 113.69162 * 220.01251 * 17 16 14 19 19 O 1.42901 * 113.61534 * 89.11121 * 17 16 14 20 20 C 1.35900 * 116.99801 * 105.83991 * 19 17 16 21 21 C 1.38737 * 120.05425 * 354.29162 * 20 19 17 22 22 C 1.38144 * 119.94256 * 179.97438 * 21 20 19 23 23 C 1.38263 * 120.05592 * 0.02562 * 22 21 20 24 24 C 1.38268 * 120.11419 * 0.27439 * 23 22 21 25 25 C 1.38153 * 120.05132 * 359.44666 * 24 23 22 26 26 C 1.53772 * 113.61518 * 205.00197 * 14 13 11 27 27 C 1.40213 * 119.75414 * 359.49306 * 10 9 8 28 28 O 1.35647 * 120.00018 * 180.23324 * 27 10 9 29 29 C 1.38820 * 119.99857 * 0.25444 * 27 10 9 30 30 C 1.37766 * 120.23946 * 359.97438 * 29 27 10 31 31 O 1.34332 * 125.66517 * 244.97085 * 4 2 1 32 32 H 0.96708 * 113.99399 * 299.99742 * 1 2 3 33 33 H 1.09001 * 109.46313 * 240.00232 * 2 1 3 34 34 H 1.48496 * 110.00112 * 178.68140 * 3 2 1 35 35 H 1.48497 * 110.00233 * 300.00430 * 3 2 1 36 36 H 1.08001 * 126.48631 * 359.97438 * 5 4 2 37 37 H 1.08001 * 126.63255 * 180.25792 * 6 5 4 38 38 H 1.07996 * 120.12083 * 0.04365 * 9 8 7 39 39 H 0.97001 * 119.99787 * 0.02562 * 13 11 10 40 40 H 1.08994 * 113.61871 * 25.43250 * 16 14 13 41 41 H 1.09007 * 113.61054 * 254.52962 * 16 14 13 42 42 H 1.08000 * 120.02882 * 359.96215 * 21 20 19 43 43 H 1.08001 * 119.97163 * 180.02562 * 22 21 20 44 44 H 1.08005 * 119.94268 * 179.97438 * 23 22 21 45 45 H 1.07991 * 119.97470 * 179.72943 * 24 23 22 46 46 H 1.07994 * 120.02714 * 180.27075 * 25 24 23 47 47 H 1.09008 * 113.61578 * 105.46755 * 26 14 13 48 48 H 1.09000 * 113.69238 * 334.57960 * 26 14 13 49 49 H 0.96700 * 113.99992 * 89.99930 * 28 27 10 50 50 H 1.07997 * 119.88029 * 180.02562 * 29 27 10 51 51 H 1.08007 * 119.87375 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7106 1.2304 5 6 1.7570 -2.0169 1.5091 6 6 2.3872 -2.2628 2.7458 7 6 2.9089 -1.0784 3.1619 8 6 3.6598 -0.8537 4.4151 9 6 4.1413 0.4160 4.7198 10 6 4.8541 0.6210 5.9008 11 6 5.3726 1.9629 6.2294 12 8 5.9895 2.1402 7.2620 13 7 5.1625 2.9919 5.3847 14 6 5.6768 4.3243 5.7112 15 1 5.8307 4.4683 6.7806 16 6 6.8792 4.7481 4.8513 17 6 6.2524 6.1517 4.8065 18 1 6.3337 6.6368 3.8338 19 8 6.6620 6.9962 5.8839 20 6 7.5472 7.9848 5.5907 21 6 8.1025 8.0664 4.3219 22 6 9.0017 9.0726 4.0262 23 6 9.3488 9.9975 4.9935 24 6 8.8015 9.9147 6.2606 25 6 7.8974 8.9138 6.5597 26 6 4.8955 5.4672 5.0419 27 6 5.0712 -0.4514 6.7776 28 8 5.7598 -0.2565 7.9299 29 6 4.5819 -1.7126 6.4662 30 6 3.8818 -1.9159 5.2972 31 8 2.6278 -0.1465 2.2311 32 1 -0.3933 0.4417 0.7652 33 1 1.7922 -0.5138 -0.8901 34 1 3.5347 1.7701 0.0321 35 1 1.5616 2.4679 -1.2084 36 1 1.2366 -2.7399 0.8985 37 1 2.4427 -3.2087 3.2640 38 1 3.9668 1.2388 4.0423 39 1 4.6701 2.8505 4.5610 40 1 6.9166 4.2554 3.8798 41 1 7.8304 4.7115 5.3825 42 1 7.8322 7.3438 3.5662 43 1 9.4340 9.1368 3.0386 44 1 10.0523 10.7832 4.7605 45 1 9.0775 10.6357 7.0157 46 1 7.4668 8.8521 7.5482 47 1 4.2450 6.0112 5.7269 48 1 4.3898 5.1724 4.1224 49 1 5.2051 -0.0104 8.6828 50 1 4.7499 -2.5371 7.1431 51 1 3.5041 -2.8997 5.0606 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11987230_13259648.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:56:12 Heat of formation + Delta-G solvation = -29.655450 kcal Electronic energy + Delta-G solvation = -37082.381635 eV Core-core repulsion = 32075.273689 eV Total energy + Delta-G solvation = -5007.107947 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.150 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.76222 -41.86462 -41.28616 -40.03881 -39.02440 -38.18468 -37.82815 -37.24286 -34.55584 -34.13888 -32.79088 -32.29746 -31.88641 -30.60951 -30.10132 -26.97152 -26.59138 -26.45429 -25.02751 -23.75619 -23.42829 -23.25895 -22.78150 -21.78648 -21.30815 -20.82228 -19.71069 -19.21437 -19.13533 -18.32823 -17.77643 -17.56288 -17.33882 -17.11960 -16.73207 -16.71856 -16.56620 -16.32996 -16.03347 -15.89462 -15.82390 -15.45359 -15.34081 -15.23274 -14.71302 -14.50891 -14.35553 -14.34078 -14.05087 -13.96335 -13.94913 -13.73806 -13.61784 -13.47055 -13.26671 -13.23721 -13.15464 -12.87763 -12.54979 -12.49333 -12.20043 -12.08590 -11.84981 -11.50966 -11.38911 -11.11190 -10.77496 -10.75161 -10.50046 -10.35151 -10.06887 -9.92723 -9.13245 -8.96072 -5.17782 -0.60539 -0.26759 0.41297 0.51959 0.72098 1.03428 1.35472 1.44941 1.67117 1.82230 1.90212 2.03450 2.04520 2.58969 2.85858 3.05429 3.14216 3.24399 3.25676 3.34600 3.44784 3.53663 3.67233 3.78437 3.82387 3.89664 3.91923 3.94935 3.97966 4.10718 4.12959 4.21426 4.29009 4.32760 4.42900 4.47292 4.53576 4.53997 4.56262 4.64597 4.68705 4.71344 4.76471 4.78213 4.89086 4.95215 4.96965 5.07146 5.09009 5.11416 5.35232 5.36993 5.39558 5.43462 5.49593 5.63322 5.85048 5.92523 6.30797 6.40878 6.46831 6.64399 7.18447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.028 4.028 3 Si 0.700 3.300 4 C -0.052 4.052 5 C -0.169 4.169 6 C -0.188 4.188 7 C 0.035 3.965 8 C -0.034 4.034 9 C -0.054 4.054 10 C -0.165 4.165 11 C 0.561 3.439 12 O -0.514 6.514 13 N -0.720 5.720 14 C 0.132 3.868 15 H 0.124 0.876 16 C -0.171 4.171 17 C 0.058 3.942 18 H 0.095 0.905 19 O -0.292 6.292 20 C 0.129 3.871 21 C -0.209 4.209 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.141 4.141 27 C 0.180 3.820 28 O -0.475 6.475 29 C -0.148 4.148 30 C -0.053 4.053 31 O -0.166 6.166 32 H 0.384 0.616 33 H 0.133 0.867 34 H -0.252 1.252 35 H -0.246 1.246 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.399 0.601 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.400 0.600 50 H 0.146 0.854 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 0.321 -1.749 4.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.139 4.139 3 Si 0.600 3.400 4 C -0.102 4.102 5 C -0.189 4.189 6 C -0.207 4.207 7 C -0.014 4.014 8 C -0.034 4.034 9 C -0.073 4.073 10 C -0.168 4.168 11 C 0.348 3.652 12 O -0.389 6.389 13 N -0.372 5.372 14 C 0.027 3.973 15 H 0.142 0.858 16 C -0.210 4.210 17 C 0.001 3.999 18 H 0.113 0.887 19 O -0.206 6.206 20 C 0.084 3.916 21 C -0.227 4.227 22 C -0.099 4.099 23 C -0.176 4.176 24 C -0.098 4.098 25 C -0.170 4.170 26 C -0.179 4.179 27 C 0.134 3.866 28 O -0.287 6.287 29 C -0.167 4.167 30 C -0.071 4.071 31 O -0.063 6.063 32 H 0.232 0.768 33 H 0.150 0.850 34 H -0.176 1.176 35 H -0.170 1.170 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.153 0.847 39 H 0.235 0.765 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.109 0.891 48 H 0.123 0.877 49 H 0.259 0.741 50 H 0.164 0.836 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.321 0.861 -2.094 3.243 hybrid contribution -0.508 -0.984 -0.590 1.255 sum -2.829 -0.123 -2.684 3.902 Atomic orbital electron populations 1.86573 1.16133 1.81745 1.49123 1.24416 0.85237 1.11254 0.92945 0.94392 0.81378 0.76987 0.87258 1.22897 1.01060 0.93939 0.92286 1.21574 1.03623 0.95676 0.97980 1.21867 1.02799 0.98435 0.97625 1.20271 1.03024 0.87424 0.90724 1.17565 1.00306 0.94171 0.91408 1.21283 0.94371 0.96616 0.94990 1.20294 1.04413 0.94300 0.97826 1.18017 0.79630 0.83831 0.83689 1.90847 1.39347 1.83978 1.24732 1.45917 1.58130 1.08844 1.24340 1.22539 0.93563 0.79974 1.01191 0.85837 1.24035 1.00080 0.95133 1.01773 1.23132 0.96290 0.89955 0.90526 0.88683 1.86085 1.57912 1.41104 1.35482 1.19020 0.90364 0.88527 0.93703 1.21276 1.02501 1.02515 0.96448 1.20991 0.95866 0.93625 0.99401 1.21131 1.02252 1.00482 0.93758 1.21029 0.95031 0.96962 0.96808 1.20495 1.01655 0.95442 0.99426 1.23596 0.95999 0.95800 1.02484 1.18611 0.89197 0.90863 0.87969 1.84751 1.35196 1.90934 1.17825 1.21404 0.99276 0.97338 0.98666 1.21130 0.95554 0.98418 0.91993 1.83902 1.57935 1.37956 1.26525 0.76839 0.84989 1.17634 1.17038 0.82828 0.82791 0.84669 0.76493 0.88329 0.89764 0.85337 0.85732 0.85780 0.85205 0.85104 0.89075 0.87650 0.74087 0.83625 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.64 12.88 -35.23 -0.45 0.18 16 2 C -0.03 0.04 2.98 36.01 0.11 0.15 16 3 Si 0.70 -1.53 32.11 -169.99 -5.46 -6.98 16 4 C -0.05 0.01 6.20 -35.56 -0.22 -0.21 16 5 C -0.17 -0.01 10.78 -39.80 -0.43 -0.44 16 6 C -0.19 0.06 10.26 -39.37 -0.40 -0.35 16 7 C 0.04 0.00 7.03 -36.49 -0.26 -0.25 16 8 C -0.03 0.02 5.87 -105.03 -0.62 -0.60 16 9 C -0.05 0.04 9.20 -38.78 -0.36 -0.32 16 10 C -0.16 -0.16 5.88 -104.90 -0.62 -0.78 16 11 C 0.56 1.33 7.76 -12.46 -0.10 1.23 16 12 O -0.51 -3.10 14.74 -16.66 -0.25 -3.34 16 13 N -0.72 0.44 5.30 -54.05 -0.29 0.16 16 14 C 0.13 -0.02 4.17 -67.12 -0.28 -0.30 16 15 H 0.12 0.29 7.46 -51.93 -0.39 -0.10 16 16 C -0.17 0.09 7.71 -25.92 -0.20 -0.11 16 17 C 0.06 -0.05 3.75 -25.92 -0.10 -0.14 16 18 H 0.10 -0.20 5.96 -51.93 -0.31 -0.51 16 19 O -0.29 -0.59 10.06 -19.43 -0.20 -0.79 16 20 C 0.13 0.29 6.68 -39.22 -0.26 0.03 16 21 C -0.21 -0.25 9.01 -39.43 -0.36 -0.60 16 22 C -0.08 -0.07 10.04 -39.61 -0.40 -0.46 16 23 C -0.16 -0.13 10.04 -39.56 -0.40 -0.53 16 24 C -0.08 -0.08 10.04 -39.60 -0.40 -0.48 16 25 C -0.15 -0.30 9.99 -39.43 -0.39 -0.69 16 26 C -0.14 0.32 7.66 -25.92 -0.20 0.13 16 27 C 0.18 0.19 6.72 -38.62 -0.26 -0.07 16 28 O -0.48 -0.94 11.55 -40.60 -0.47 -1.40 16 29 C -0.15 0.14 9.96 -39.54 -0.39 -0.25 16 30 C -0.05 0.08 9.54 -39.15 -0.37 -0.30 16 31 O -0.17 0.00 8.80 4.60 0.04 0.04 16 32 H 0.38 -1.91 8.70 45.56 0.40 -1.51 16 33 H 0.13 -0.22 7.96 -51.93 -0.41 -0.63 16 34 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 35 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 36 H 0.15 -0.14 8.06 -52.49 -0.42 -0.56 16 37 H 0.15 -0.36 7.25 -52.49 -0.38 -0.74 16 38 H 0.14 -0.39 6.24 -52.49 -0.33 -0.72 16 39 H 0.40 -1.34 6.75 -40.82 -0.28 -1.62 16 40 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 41 H 0.08 0.11 8.14 -51.92 -0.42 -0.31 16 42 H 0.13 -0.08 5.92 -52.49 -0.31 -0.39 16 43 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 44 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 45 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 46 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 47 H 0.09 -0.17 8.14 -51.92 -0.42 -0.59 16 48 H 0.11 -0.50 8.12 -51.93 -0.42 -0.92 16 49 H 0.40 -0.73 9.06 45.56 0.41 -0.32 16 50 H 0.15 -0.39 8.06 -52.49 -0.42 -0.81 16 51 H 0.14 -0.50 6.96 -52.48 -0.37 -0.87 16 LS Contribution 434.10 15.07 6.54 6.54 Total: 0.00 -10.74 434.10 -12.81 -23.55 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: -5.39 Total: -12.62 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -6.90 Total: -5.34 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -0.29 Total: 0.16 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -1.32 Total: -5.31 kcal Atomic # 14 Polarization: -1.53 SS G_CDS: -5.46 Total: -6.98 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -10.74 -12.81 -23.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13259648.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.104 kcal (2) G-P(sol) polarization free energy of solvation -10.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds