Wall clock time and date at job start Sat Mar 6 2021 18:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47062 * 2 1 4 4 C 1.50707 * 109.47224 * 240.00312 * 2 1 3 5 5 C 1.34846 * 125.89970 * 149.68430 * 4 2 1 6 6 C 1.40939 * 107.46731 * 179.91136 * 5 4 2 7 7 C 1.34855 * 107.46923 * 0.35731 * 6 5 4 8 8 N 1.36567 * 125.89706 * 329.99870 * 4 2 1 9 9 C 1.40200 * 125.66770 * 0.02562 * 8 4 2 10 10 C 1.38826 * 120.06365 * 309.71724 * 9 8 4 11 11 C 1.38128 * 119.93469 * 179.76917 * 10 9 8 12 12 C 1.38272 * 120.06232 * 0.49157 * 11 10 9 13 13 C 1.50699 * 119.93246 * 179.74499 * 12 11 10 14 14 C 1.50702 * 109.47073 * 270.01868 * 13 12 11 15 15 O 1.21280 * 120.00161 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00240 * 180.02562 * 16 14 13 18 18 H 1.08999 * 112.84622 * 23.80650 * 17 16 14 19 19 C 1.53779 * 113.61362 * 155.00369 * 17 16 14 20 20 C 1.53781 * 87.07887 * 139.98305 * 19 17 16 21 21 H 1.08997 * 113.61552 * 220.01495 * 20 19 17 22 22 O 1.42904 * 113.61559 * 89.19593 * 20 19 17 23 23 C 1.35899 * 117.00012 * 156.68157 * 22 20 19 24 24 C 1.38732 * 120.05407 * 5.43609 * 23 22 20 25 25 C 1.38152 * 119.93969 * 179.74306 * 24 23 22 26 26 C 1.38259 * 120.05464 * 0.50875 * 25 24 23 27 27 C 1.38262 * 120.11798 * 359.76894 * 26 25 24 28 28 C 1.38148 * 120.05325 * 359.97438 * 27 26 25 29 29 C 1.53778 * 87.08281 * 334.56454 * 20 19 17 30 30 C 1.38282 * 120.13482 * 359.76481 * 12 11 10 31 31 C 1.38123 * 120.06098 * 359.97438 * 30 12 11 32 32 H 0.96693 * 114.00228 * 59.99532 * 1 2 3 33 33 H 1.09002 * 109.47381 * 120.00231 * 2 1 3 34 34 H 1.48498 * 109.99980 * 298.68498 * 3 2 1 35 35 H 1.48500 * 109.99579 * 60.00305 * 3 2 1 36 36 H 1.08007 * 126.26747 * 0.04294 * 5 4 2 37 37 H 1.07997 * 126.27143 * 180.14725 * 6 5 4 38 38 H 1.07992 * 125.90410 * 179.78113 * 7 6 5 39 39 H 1.07999 * 120.03372 * 359.97438 * 10 9 8 40 40 H 1.08000 * 119.96660 * 180.21522 * 11 10 9 41 41 H 1.08995 * 109.47621 * 30.02156 * 13 12 11 42 42 H 1.09008 * 109.47164 * 150.02314 * 13 12 11 43 43 H 0.97009 * 120.00110 * 0.02562 * 16 14 13 44 44 H 1.08998 * 113.61084 * 254.53185 * 19 17 16 45 45 H 1.08995 * 113.61793 * 25.35125 * 19 17 16 46 46 H 1.07999 * 120.03223 * 359.97438 * 24 23 22 47 47 H 1.08005 * 119.96550 * 180.27560 * 25 24 23 48 48 H 1.08008 * 119.94073 * 179.75000 * 26 25 24 49 49 H 1.07998 * 119.97858 * 180.02562 * 27 26 25 50 50 H 1.07998 * 120.02932 * 180.02562 * 28 27 26 51 51 H 1.08997 * 113.61828 * 270.88577 * 29 20 19 52 52 H 1.09005 * 113.61634 * 139.98029 * 29 20 19 53 53 H 1.07996 * 119.96839 * 179.97438 * 30 12 11 54 54 H 1.08003 * 120.02902 * 179.97438 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 3.0840 -0.4484 -1.8796 6 6 3.1680 -1.3390 -2.9687 7 6 2.0598 -2.1072 -2.9500 8 7 1.2951 -1.7265 -1.8844 9 6 0.0611 -2.2852 -1.5227 10 6 -0.1604 -2.6948 -0.2149 11 6 -1.3788 -3.2404 0.1396 12 6 -2.3739 -3.3881 -0.8090 13 6 -3.7001 -3.9891 -0.4203 14 6 -3.6483 -5.4836 -0.6066 15 8 -2.6341 -6.0091 -1.0144 16 7 -4.7286 -6.2364 -0.3191 17 6 -4.6781 -7.6894 -0.4997 18 1 -3.6633 -8.0855 -0.4625 19 6 -5.6715 -8.4556 0.3896 20 6 -5.9288 -9.3691 -0.8204 21 1 -6.9761 -9.6442 -0.9449 22 8 -5.0483 -10.4927 -0.8869 23 6 -5.4799 -11.5742 -1.5876 24 6 -6.6737 -11.5145 -2.2919 25 6 -7.1076 -12.6136 -3.0077 26 6 -6.3585 -13.7756 -3.0140 27 6 -5.1713 -13.8395 -2.3082 28 6 -4.7303 -12.7416 -1.5952 29 6 -5.4926 -8.1891 -1.7047 30 6 -2.1544 -2.9859 -2.1137 31 6 -0.9399 -2.4347 -2.4729 32 1 -0.3933 0.4417 -0.7649 33 1 1.7924 -0.5139 0.8900 34 1 1.5878 2.4586 -1.2242 35 1 1.5615 2.4678 1.2086 36 1 3.8108 0.3045 -1.6124 37 1 3.9710 -1.3937 -3.6888 38 1 1.8187 -2.8883 -3.6556 39 1 0.6181 -2.5839 0.5254 40 1 -1.5528 -3.5560 1.1577 41 1 -3.9105 -3.7603 0.6244 42 1 -4.4865 -3.5716 -1.0492 43 1 -5.5397 -5.8162 0.0074 44 1 -5.2012 -8.9661 1.2300 45 1 -6.5387 -7.8650 0.6847 46 1 -7.2615 -10.6085 -2.2836 47 1 -8.0347 -12.5661 -3.5598 48 1 -6.7015 -14.6351 -3.5710 49 1 -4.5877 -14.7483 -2.3150 50 1 -3.8027 -12.7918 -1.0444 51 1 -6.3116 -7.5260 -1.9833 52 1 -4.8778 -8.4844 -2.5550 53 1 -2.9334 -3.1030 -2.8525 54 1 -0.7690 -2.1212 -3.4921 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_13287746.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:56:28 Heat of formation + Delta-G solvation = 49.601651 kcal Electronic energy + Delta-G solvation = -36312.295445 eV Core-core repulsion = 31569.487579 eV Total energy + Delta-G solvation = -4742.807866 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.177 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.72402 -41.77601 -40.94146 -39.90878 -39.16954 -37.87001 -37.36735 -34.88419 -34.27053 -32.18534 -31.99681 -31.74531 -31.05466 -30.67465 -28.10345 -26.88314 -26.09780 -25.89857 -24.01645 -23.77680 -23.42426 -23.00019 -21.60438 -21.37129 -20.79170 -20.63129 -19.35087 -19.32200 -18.11364 -17.72264 -17.47608 -17.12762 -17.01285 -16.76869 -16.54947 -16.37280 -16.04096 -15.90703 -15.83748 -15.46254 -15.38786 -15.30078 -14.93660 -14.76357 -14.52885 -14.40576 -14.36232 -14.18951 -13.98902 -13.96129 -13.67919 -13.52202 -13.31819 -13.26352 -13.17399 -12.97544 -12.62418 -12.57436 -12.50790 -12.41424 -12.13187 -12.08967 -11.95055 -11.49793 -11.37512 -11.03705 -10.91890 -10.32129 -10.10818 -10.00584 -9.99850 -9.21470 -9.17661 -9.05764 -4.90685 -0.03844 0.32569 0.34380 0.43498 1.05062 1.39606 1.58400 1.65310 1.82184 1.98305 2.06372 2.09416 2.15530 2.70856 2.78825 3.22445 3.31339 3.40404 3.59130 3.65068 3.68780 3.73799 3.82061 3.85265 3.88817 3.96218 4.00316 4.11249 4.16136 4.19789 4.29000 4.29430 4.45573 4.46333 4.50133 4.52044 4.53168 4.60261 4.60721 4.64281 4.65183 4.70879 4.80938 4.82216 4.91516 4.93496 5.00943 5.05024 5.16499 5.18942 5.26046 5.31247 5.35519 5.44083 5.47280 5.48094 5.57038 5.76602 5.83110 5.92367 6.17722 6.34369 6.42655 6.47322 6.53949 7.25393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.060 4.060 3 Si 0.803 3.197 4 C -0.027 4.027 5 C -0.193 4.193 6 C -0.198 4.198 7 C -0.026 4.026 8 N -0.399 5.399 9 C 0.112 3.888 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.069 4.069 13 C -0.096 4.096 14 C 0.512 3.488 15 O -0.583 6.583 16 N -0.706 5.706 17 C 0.123 3.877 18 H 0.081 0.919 19 C -0.125 4.125 20 C 0.050 3.950 21 H 0.113 0.887 22 O -0.315 6.315 23 C 0.111 3.889 24 C -0.215 4.215 25 C -0.087 4.087 26 C -0.167 4.167 27 C -0.087 4.087 28 C -0.175 4.175 29 C -0.162 4.162 30 C -0.098 4.098 31 C -0.129 4.129 32 H 0.378 0.622 33 H 0.123 0.877 34 H -0.294 1.294 35 H -0.292 1.292 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.421 0.579 44 H 0.079 0.921 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.146 0.854 50 H 0.128 0.872 51 H 0.125 0.875 52 H 0.056 0.944 53 H 0.145 0.855 54 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 1.378 1.032 6.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.168 4.168 3 Si 0.706 3.294 4 C -0.137 4.137 5 C -0.217 4.217 6 C -0.222 4.222 7 C -0.154 4.154 8 N -0.072 5.072 9 C 0.022 3.978 10 C -0.115 4.115 11 C -0.118 4.118 12 C -0.069 4.069 13 C -0.135 4.135 14 C 0.300 3.700 15 O -0.462 6.462 16 N -0.359 5.359 17 C 0.018 3.982 18 H 0.099 0.901 19 C -0.163 4.163 20 C -0.007 4.007 21 H 0.131 0.869 22 O -0.229 6.229 23 C 0.066 3.934 24 C -0.233 4.233 25 C -0.105 4.105 26 C -0.185 4.185 27 C -0.105 4.105 28 C -0.194 4.194 29 C -0.201 4.201 30 C -0.116 4.116 31 C -0.149 4.149 32 H 0.226 0.774 33 H 0.141 0.859 34 H -0.221 1.221 35 H -0.219 1.219 36 H 0.190 0.810 37 H 0.174 0.826 38 H 0.187 0.813 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.260 0.740 44 H 0.098 0.902 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.164 0.836 50 H 0.146 0.854 51 H 0.143 0.857 52 H 0.074 0.926 53 H 0.162 0.838 54 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.122 1.421 1.499 6.462 hybrid contribution -1.023 -0.326 -0.706 1.285 sum -7.146 1.094 0.793 7.272 Atomic orbital electron populations 1.86591 1.18114 1.80021 1.49614 1.25069 0.83559 1.11944 0.96233 0.93468 0.90000 0.69801 0.76169 1.21307 0.96852 0.95435 1.00075 1.21068 0.98112 1.04476 0.98003 1.21241 0.99531 0.99520 1.01916 1.22309 0.94117 1.04632 0.94296 1.41579 1.15161 1.27283 1.23174 1.17807 0.84977 1.00303 0.94719 1.20900 0.98235 0.97762 0.94604 1.21046 0.92199 0.98201 1.00321 1.19590 0.95867 0.97938 0.93545 1.20766 0.96212 0.89558 1.07008 1.21103 0.82666 0.90236 0.76001 1.90758 1.33209 1.75350 1.46911 1.45850 1.16104 1.06639 1.67288 1.22342 0.99222 0.80060 0.96599 0.90077 1.23600 1.00553 0.95814 0.96293 1.23372 0.94595 0.83949 0.98792 0.86894 1.86066 1.44988 1.23112 1.68765 1.19257 0.94018 0.87259 0.92864 1.21516 0.97425 1.01778 1.02621 1.21338 1.00018 0.92250 0.96909 1.21443 0.95896 0.99338 1.01828 1.21288 0.96392 0.97965 0.94859 1.20707 1.01933 0.91984 1.04784 1.24010 1.01268 0.97328 0.97521 1.21072 0.96881 0.97552 0.96130 1.21118 0.92787 1.01644 0.99308 0.77411 0.85889 1.22127 1.21950 0.80995 0.82576 0.81293 0.86366 0.84438 0.84948 0.84610 0.74012 0.90201 0.84183 0.83561 0.83591 0.83986 0.83633 0.85413 0.85693 0.92551 0.83758 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.27 9.86 -148.98 -1.47 -3.74 16 2 C -0.06 -0.12 2.29 71.24 0.16 0.04 16 3 Si 0.80 -0.38 31.13 68.60 2.14 1.75 16 4 C -0.03 -0.14 6.02 41.04 0.25 0.11 16 5 C -0.19 -0.67 9.42 22.15 0.21 -0.46 16 6 C -0.20 -0.95 10.86 22.15 0.24 -0.71 16 7 C -0.03 -0.17 11.12 83.18 0.93 0.75 16 8 N -0.40 -2.95 2.87 -333.41 -0.96 -3.90 16 9 C 0.11 0.81 4.89 38.08 0.19 0.99 16 10 C -0.10 -0.67 7.66 22.38 0.17 -0.50 16 11 C -0.10 -0.42 9.69 22.25 0.22 -0.21 16 12 C -0.07 -0.14 4.38 -19.85 -0.09 -0.22 16 13 C -0.10 0.49 5.83 29.10 0.17 0.66 16 14 C 0.51 0.80 7.82 87.66 0.69 1.48 16 15 O -0.58 -7.71 15.63 -3.03 -0.05 -7.76 16 16 N -0.71 3.21 5.35 -440.03 -2.36 0.85 16 17 C 0.12 -0.05 4.18 45.52 0.19 0.14 16 18 H 0.08 0.66 7.46 -2.39 -0.02 0.64 16 19 C -0.12 0.67 7.66 31.12 0.24 0.91 16 20 C 0.05 -0.09 3.75 31.12 0.12 0.02 16 21 H 0.11 -0.65 5.95 -2.39 -0.01 -0.67 16 22 O -0.32 -1.85 10.07 -92.41 -0.93 -2.78 16 23 C 0.11 0.65 6.68 22.51 0.15 0.80 16 24 C -0.22 -0.45 9.02 22.37 0.20 -0.25 16 25 C -0.09 -0.07 10.04 22.25 0.22 0.15 16 26 C -0.17 -0.21 10.04 22.28 0.22 0.01 16 27 C -0.09 -0.23 10.04 22.25 0.22 -0.01 16 28 C -0.18 -1.02 9.99 22.37 0.22 -0.79 16 29 C -0.16 0.33 7.71 31.12 0.24 0.57 16 30 C -0.10 -0.26 9.69 22.25 0.22 -0.05 16 31 C -0.13 -0.66 9.66 22.38 0.22 -0.44 16 32 H 0.38 0.55 8.70 -74.06 -0.64 -0.10 16 33 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 34 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 35 H -0.29 -1.59 7.11 99.48 0.71 -0.89 16 36 H 0.17 -0.47 6.88 -2.91 -0.02 -0.49 16 37 H 0.16 0.15 8.06 -2.91 -0.02 0.12 16 38 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 39 H 0.12 0.85 7.67 -2.91 -0.02 0.83 16 40 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.13 -1.34 8.08 -2.39 -0.02 -1.36 16 42 H 0.14 -1.49 8.08 -2.38 -0.02 -1.51 16 43 H 0.42 -5.35 8.73 -92.70 -0.81 -6.15 16 44 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.14 -1.74 8.12 -2.39 -0.02 -1.76 16 46 H 0.15 -0.39 5.91 -2.91 -0.02 -0.41 16 47 H 0.15 -0.60 8.06 -2.91 -0.02 -0.62 16 48 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 49 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 50 H 0.13 0.63 8.06 -2.91 -0.02 0.61 16 51 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 52 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 53 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 54 H 0.13 0.42 8.06 -2.91 -0.02 0.40 16 Total: 0.00 -27.55 448.07 1.49 -26.06 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: -0.48 Total: -13.49 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.59 Total: 3.00 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -3.31 Total: -3.05 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -2.45 Total: -14.27 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: 2.14 Total: 1.75 kcal Total: -27.55 1.49 -26.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13287746.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.662 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds