Wall clock time and date at job start Sat Mar 6 2021 18:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47189 * 2 1 4 4 C 1.50697 * 109.47311 * 120.00405 * 2 1 3 5 5 C 1.34175 * 125.43822 * 65.31466 * 4 2 1 6 6 C 1.47025 * 105.95132 * 180.12753 * 5 4 2 7 7 C 1.47382 * 127.18778 * 179.88921 * 6 5 4 8 8 O 1.21608 * 120.00280 * 359.70689 * 7 6 5 9 9 N 1.34776 * 119.99485 * 179.70503 * 7 6 5 10 10 C 1.46506 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84770 * 23.80806 * 10 9 7 12 12 C 1.53780 * 113.61324 * 155.00163 * 10 9 7 13 13 C 1.53775 * 87.08322 * 89.11729 * 12 10 9 14 14 H 1.08997 * 113.61833 * 270.79894 * 13 12 10 15 15 O 1.42900 * 113.61333 * 139.97761 * 13 12 10 16 16 C 1.35902 * 116.99644 * 157.95099 * 15 13 12 17 17 C 1.38733 * 120.05700 * 5.66296 * 16 15 13 18 18 C 1.38145 * 119.94082 * 179.76616 * 17 16 15 19 19 C 1.38267 * 120.05912 * 0.50958 * 18 17 16 20 20 C 1.38261 * 120.10620 * 359.73736 * 19 18 17 21 21 C 1.38139 * 120.06135 * 0.02562 * 20 19 18 22 22 C 1.53771 * 113.61615 * 252.49774 * 10 9 7 23 23 C 1.36416 * 105.61627 * 359.62674 * 6 5 4 24 24 O 1.33647 * 108.39742 * 0.22784 * 23 6 5 25 25 H 0.96706 * 113.99817 * 299.99738 * 1 2 3 26 26 H 1.09008 * 109.46843 * 240.00417 * 2 1 3 27 27 H 1.48503 * 109.99936 * 178.68442 * 3 2 1 28 28 H 1.48500 * 110.00061 * 299.99915 * 3 2 1 29 29 H 1.07999 * 127.02391 * 0.02562 * 5 4 2 30 30 H 0.96993 * 120.00621 * 0.02562 * 9 7 6 31 31 H 1.09000 * 113.61638 * 334.56536 * 12 10 9 32 32 H 1.09002 * 113.61366 * 203.66778 * 12 10 9 33 33 H 1.08004 * 120.02606 * 359.97438 * 17 16 15 34 34 H 1.08005 * 119.96613 * 180.24583 * 18 17 16 35 35 H 1.07995 * 119.94359 * 179.76826 * 19 18 17 36 36 H 1.08005 * 119.96887 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.03019 * 180.02562 * 21 20 19 38 38 H 1.08998 * 113.61636 * 156.33452 * 22 10 9 39 39 H 1.09007 * 113.61558 * 25.43340 * 22 10 9 40 40 H 1.07998 * 125.79747 * 180.22864 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7603 -2.0135 1.5007 6 6 2.4127 -2.2463 2.7975 7 6 2.5015 -3.5196 3.5343 8 8 1.9949 -4.5249 3.0742 9 7 3.1441 -3.5698 4.7179 10 6 3.2319 -4.8354 5.4506 11 1 3.1295 -5.7069 4.8039 12 6 4.4365 -4.9133 6.4033 13 6 3.5273 -4.2932 7.4774 14 1 3.5438 -3.2034 7.4873 15 8 3.7047 -4.8627 8.7759 16 6 3.3161 -4.1095 9.8382 17 6 2.6684 -2.9000 9.6326 18 6 2.2701 -2.1385 10.7143 19 6 2.5258 -2.5759 12.0008 20 6 3.1756 -3.7785 12.2082 21 6 3.5716 -4.5460 11.1301 22 6 2.3392 -4.8861 6.7017 23 6 2.9239 -1.0386 3.1733 24 8 2.6261 -0.1419 2.2281 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 3.5346 1.7702 0.0320 28 1 1.5615 2.4679 -1.2085 29 1 1.2466 -2.7422 0.8910 30 1 3.5478 -2.7679 5.0850 31 1 5.2671 -4.2712 6.1104 32 1 4.7482 -5.9328 6.6306 33 1 2.4729 -2.5556 8.6278 34 1 1.7624 -1.1987 10.5547 35 1 2.2169 -1.9773 12.8450 36 1 3.3745 -4.1178 13.2141 37 1 4.0788 -5.4855 11.2927 38 1 2.0774 -5.8981 7.0106 39 1 1.4765 -4.2218 6.6498 40 1 3.4755 -0.8409 4.0805 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_11987230_13456056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:57:01 Heat of formation + Delta-G solvation = -20.046053 kcal Electronic energy + Delta-G solvation = -25050.473481 eV Core-core repulsion = 21186.444220 eV Total energy + Delta-G solvation = -3864.029260 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.79935 -41.78364 -40.59437 -39.23952 -38.08827 -37.48614 -34.53707 -33.66829 -31.98680 -31.76227 -30.69010 -27.06171 -26.99488 -26.36175 -24.86966 -23.51927 -22.95032 -22.35938 -21.24517 -20.65929 -19.56333 -19.29842 -17.89902 -17.66775 -17.54984 -17.15604 -17.02339 -16.78564 -16.41664 -16.14883 -15.94907 -15.73471 -15.53097 -15.07677 -14.87764 -14.41486 -14.24689 -14.08716 -14.04198 -13.76748 -13.68027 -13.55568 -13.19989 -12.91978 -12.69303 -12.51603 -12.19009 -11.99252 -11.63798 -11.45185 -11.15375 -10.94668 -10.70701 -10.28480 -9.97682 -9.89404 -9.16372 -5.11849 0.13818 0.36555 0.47951 0.82853 1.06434 1.39826 1.70474 1.83759 1.88664 2.15959 2.23750 2.81651 3.13765 3.18192 3.25885 3.32276 3.48540 3.56432 3.60290 3.81854 3.86863 3.92609 4.14837 4.17912 4.24109 4.28833 4.42513 4.47764 4.50782 4.54258 4.59356 4.62896 4.70328 4.72305 4.77377 4.84953 5.03453 5.14773 5.30271 5.37380 5.44806 5.58990 5.75416 5.80709 6.28003 6.33024 6.44525 7.08396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.029 4.029 3 Si 0.707 3.293 4 C -0.057 4.057 5 C -0.122 4.122 6 C -0.238 4.238 7 C 0.592 3.408 8 O -0.525 6.525 9 N -0.714 5.714 10 C 0.124 3.876 11 H 0.118 0.882 12 C -0.135 4.135 13 C 0.054 3.946 14 H 0.099 0.901 15 O -0.300 6.300 16 C 0.128 3.872 17 C -0.210 4.210 18 C -0.080 4.080 19 C -0.159 4.159 20 C -0.080 4.080 21 C -0.153 4.153 22 C -0.166 4.166 23 C 0.032 3.968 24 O -0.165 6.165 25 H 0.384 0.616 26 H 0.134 0.866 27 H -0.253 1.253 28 H -0.247 1.247 29 H 0.163 0.837 30 H 0.398 0.602 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 4.948 3.454 6.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.139 4.139 3 Si 0.606 3.394 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.243 4.243 7 C 0.380 3.620 8 O -0.401 6.401 9 N -0.366 5.366 10 C 0.019 3.981 11 H 0.136 0.864 12 C -0.173 4.173 13 C -0.002 4.002 14 H 0.116 0.884 15 O -0.213 6.213 16 C 0.083 3.917 17 C -0.229 4.229 18 C -0.098 4.098 19 C -0.177 4.177 20 C -0.098 4.098 21 C -0.172 4.172 22 C -0.205 4.205 23 C -0.038 4.038 24 O -0.061 6.061 25 H 0.232 0.768 26 H 0.151 0.849 27 H -0.178 1.178 28 H -0.171 1.171 29 H 0.180 0.820 30 H 0.232 0.768 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.826 4.601 2.088 5.372 hybrid contribution 0.179 -0.293 0.216 0.405 sum 2.005 4.308 2.304 5.281 Atomic orbital electron populations 1.86584 1.16068 1.81728 1.49123 1.24475 0.85307 1.11383 0.92765 0.94265 0.81361 0.76502 0.87257 1.22756 1.01673 0.93411 0.92699 1.22550 1.01094 0.95340 0.95229 1.21484 1.09373 0.94184 0.99221 1.17251 0.77626 0.87210 0.79898 1.90833 1.45962 1.35615 1.67691 1.45521 1.57933 1.11759 1.21380 1.21608 0.96139 0.87989 0.92377 0.86417 1.23598 0.96937 1.04074 0.92720 1.24233 0.97684 0.98207 0.80088 0.88363 1.86174 1.79214 1.42722 1.13216 1.19045 0.94427 0.90483 0.87722 1.21241 1.05343 0.96275 1.00039 1.20990 0.97547 0.99056 0.92234 1.21127 1.01952 0.97447 0.97168 1.21036 0.96224 0.94011 0.98511 1.20509 1.04987 1.02127 0.89573 1.24035 0.97706 1.03743 0.94975 1.24453 0.99365 0.86752 0.93260 1.83688 1.57138 1.38828 1.26396 0.76804 0.84884 1.17769 1.17098 0.81987 0.76763 0.89659 0.87014 0.85597 0.85732 0.85766 0.85226 0.85149 0.87594 0.90241 0.77027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.39 12.88 -35.23 -0.45 -0.06 16 2 C -0.03 0.03 2.97 36.00 0.11 0.14 16 3 Si 0.71 -1.35 32.09 -169.99 -5.46 -6.81 16 4 C -0.06 0.01 6.18 -35.74 -0.22 -0.21 16 5 C -0.12 -0.18 10.90 -37.45 -0.41 -0.59 16 6 C -0.24 -0.12 6.31 -103.27 -0.65 -0.77 16 7 C 0.59 1.09 7.81 -12.54 -0.10 0.99 16 8 O -0.52 -3.28 16.58 5.27 0.09 -3.19 16 9 N -0.71 1.22 5.25 -54.11 -0.28 0.94 16 10 C 0.12 -0.15 4.32 -67.12 -0.29 -0.44 16 11 H 0.12 0.06 7.46 -51.93 -0.39 -0.33 16 12 C -0.14 0.33 7.66 -25.92 -0.20 0.13 16 13 C 0.05 -0.08 3.51 -25.92 -0.09 -0.17 16 14 H 0.10 -0.30 6.03 -51.93 -0.31 -0.61 16 15 O -0.30 -0.39 10.15 -19.43 -0.20 -0.59 16 16 C 0.13 0.21 6.68 -39.22 -0.26 -0.06 16 17 C -0.21 -0.08 9.01 -39.43 -0.36 -0.44 16 18 C -0.08 -0.01 10.04 -39.60 -0.40 -0.40 16 19 C -0.16 -0.03 10.04 -39.56 -0.40 -0.43 16 20 C -0.08 -0.03 10.04 -39.61 -0.40 -0.43 16 21 C -0.15 -0.21 9.99 -39.43 -0.39 -0.60 16 22 C -0.17 0.17 7.71 -25.92 -0.20 -0.03 16 23 C 0.03 -0.08 11.61 30.08 0.35 0.27 16 24 O -0.16 0.19 8.90 7.65 0.07 0.26 16 25 H 0.38 -1.79 8.70 45.56 0.40 -1.40 16 26 H 0.13 -0.17 7.96 -51.92 -0.41 -0.59 16 27 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 28 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 29 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 30 H 0.40 -1.97 7.67 -40.82 -0.31 -2.29 16 31 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 32 H 0.11 -0.25 8.14 -51.93 -0.42 -0.67 16 33 H 0.13 -0.20 5.94 -52.48 -0.31 -0.51 16 34 H 0.12 -0.24 8.06 -52.48 -0.42 -0.66 16 35 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 36 H 0.13 -0.21 8.06 -52.48 -0.42 -0.63 16 37 H 0.13 0.05 8.06 -52.49 -0.42 -0.37 16 38 H 0.11 -0.05 8.14 -51.93 -0.42 -0.48 16 39 H 0.08 -0.06 8.14 -51.92 -0.42 -0.48 16 40 H 0.21 -1.53 7.47 -52.49 -0.39 -1.92 16 LS Contribution 348.97 15.07 5.26 5.26 Total: 0.00 -9.61 348.97 -9.62 -19.23 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -4.74 Total: -11.99 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.91 Total: -3.04 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.28 Total: 0.94 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.50 Total: -3.58 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -5.46 Total: -6.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -9.61 -9.62 -19.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13456056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.813 kcal (2) G-P(sol) polarization free energy of solvation -9.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds