Wall clock time and date at job start Sat Mar 6 2021 18:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47189 * 2 1 4 4 C 1.50697 * 109.47311 * 120.00405 * 2 1 3 5 5 C 1.34175 * 125.43822 * 65.31466 * 4 2 1 6 6 C 1.47025 * 105.95132 * 180.12753 * 5 4 2 7 7 C 1.47382 * 127.18778 * 179.88921 * 6 5 4 8 8 O 1.21608 * 120.00280 * 359.70689 * 7 6 5 9 9 N 1.34776 * 119.99485 * 179.70503 * 7 6 5 10 10 C 1.46506 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84770 * 23.80806 * 10 9 7 12 12 C 1.53780 * 113.61324 * 155.00163 * 10 9 7 13 13 C 1.53775 * 87.08322 * 89.11729 * 12 10 9 14 14 H 1.08997 * 113.61833 * 270.79894 * 13 12 10 15 15 O 1.42900 * 113.61333 * 139.97761 * 13 12 10 16 16 C 1.35902 * 116.99644 * 157.95099 * 15 13 12 17 17 C 1.38733 * 120.05700 * 5.66296 * 16 15 13 18 18 C 1.38145 * 119.94082 * 179.76616 * 17 16 15 19 19 C 1.38267 * 120.05912 * 0.50958 * 18 17 16 20 20 C 1.38261 * 120.10620 * 359.73736 * 19 18 17 21 21 C 1.38139 * 120.06135 * 0.02562 * 20 19 18 22 22 C 1.53771 * 113.61615 * 252.49774 * 10 9 7 23 23 C 1.36416 * 105.61627 * 359.62674 * 6 5 4 24 24 O 1.33647 * 108.39742 * 0.22784 * 23 6 5 25 25 H 0.96706 * 113.99817 * 299.99738 * 1 2 3 26 26 H 1.09008 * 109.46843 * 240.00417 * 2 1 3 27 27 H 1.48503 * 109.99936 * 178.68442 * 3 2 1 28 28 H 1.48500 * 110.00061 * 299.99915 * 3 2 1 29 29 H 1.07999 * 127.02391 * 0.02562 * 5 4 2 30 30 H 0.96993 * 120.00621 * 0.02562 * 9 7 6 31 31 H 1.09000 * 113.61638 * 334.56536 * 12 10 9 32 32 H 1.09002 * 113.61366 * 203.66778 * 12 10 9 33 33 H 1.08004 * 120.02606 * 359.97438 * 17 16 15 34 34 H 1.08005 * 119.96613 * 180.24583 * 18 17 16 35 35 H 1.07995 * 119.94359 * 179.76826 * 19 18 17 36 36 H 1.08005 * 119.96887 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.03019 * 180.02562 * 21 20 19 38 38 H 1.08998 * 113.61636 * 156.33452 * 22 10 9 39 39 H 1.09007 * 113.61558 * 25.43340 * 22 10 9 40 40 H 1.07998 * 125.79747 * 180.22864 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7603 -2.0135 1.5007 6 6 2.4127 -2.2463 2.7975 7 6 2.5015 -3.5196 3.5343 8 8 1.9949 -4.5249 3.0742 9 7 3.1441 -3.5698 4.7179 10 6 3.2319 -4.8354 5.4506 11 1 3.1295 -5.7069 4.8039 12 6 4.4365 -4.9133 6.4033 13 6 3.5273 -4.2932 7.4774 14 1 3.5438 -3.2034 7.4873 15 8 3.7047 -4.8627 8.7759 16 6 3.3161 -4.1095 9.8382 17 6 2.6684 -2.9000 9.6326 18 6 2.2701 -2.1385 10.7143 19 6 2.5258 -2.5759 12.0008 20 6 3.1756 -3.7785 12.2082 21 6 3.5716 -4.5460 11.1301 22 6 2.3392 -4.8861 6.7017 23 6 2.9239 -1.0386 3.1733 24 8 2.6261 -0.1419 2.2281 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8901 27 1 3.5346 1.7702 0.0320 28 1 1.5615 2.4679 -1.2085 29 1 1.2466 -2.7422 0.8910 30 1 3.5478 -2.7679 5.0850 31 1 5.2671 -4.2712 6.1104 32 1 4.7482 -5.9328 6.6306 33 1 2.4729 -2.5556 8.6278 34 1 1.7624 -1.1987 10.5547 35 1 2.2169 -1.9773 12.8450 36 1 3.3745 -4.1178 13.2141 37 1 4.0788 -5.4855 11.2927 38 1 2.0774 -5.8981 7.0106 39 1 1.4765 -4.2218 6.6498 40 1 3.4755 -0.8409 4.0805 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_13456056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:57:01 Heat of formation + Delta-G solvation = -20.305110 kcal Electronic energy + Delta-G solvation = -25050.484714 eV Core-core repulsion = 21186.444220 eV Total energy + Delta-G solvation = -3864.040494 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.73740 -41.74667 -40.63278 -39.25721 -38.00291 -37.48803 -34.59583 -33.62852 -31.94652 -31.69536 -30.66136 -27.00635 -26.88810 -26.28034 -24.84010 -23.49207 -22.91665 -22.34864 -21.20827 -20.61160 -19.50133 -19.23017 -17.81050 -17.66593 -17.48212 -17.10917 -16.96805 -16.74629 -16.38664 -16.11631 -15.95691 -15.67388 -15.48862 -15.06829 -14.91014 -14.36960 -14.25639 -14.05719 -14.01398 -13.70846 -13.61903 -13.50643 -13.14323 -12.82665 -12.64378 -12.45045 -12.22458 -11.93225 -11.55765 -11.35956 -11.31574 -10.98419 -10.63014 -10.28882 -9.95488 -9.81393 -9.15755 -4.98176 0.23360 0.38973 0.48442 0.79634 1.17741 1.50920 1.80402 1.89218 1.95968 2.17650 2.23140 2.83484 3.29393 3.30175 3.36133 3.45504 3.58186 3.69270 3.72699 3.92794 3.94710 4.01354 4.22951 4.25923 4.31979 4.37080 4.48839 4.49681 4.55512 4.65009 4.68044 4.74079 4.78672 4.86873 4.88004 4.92996 5.08589 5.10093 5.33433 5.41207 5.48722 5.61838 5.81965 5.86742 6.38244 6.48311 6.62774 7.07548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.038 4.038 3 Si 0.800 3.200 4 C -0.052 4.052 5 C -0.153 4.153 6 C -0.270 4.270 7 C 0.591 3.409 8 O -0.583 6.583 9 N -0.693 5.693 10 C 0.123 3.877 11 H 0.095 0.905 12 C -0.124 4.124 13 C 0.055 3.945 14 H 0.121 0.879 15 O -0.316 6.316 16 C 0.111 3.889 17 C -0.215 4.215 18 C -0.087 4.087 19 C -0.169 4.169 20 C -0.088 4.088 21 C -0.174 4.174 22 C -0.166 4.166 23 C 0.070 3.930 24 O -0.162 6.162 25 H 0.400 0.600 26 H 0.129 0.871 27 H -0.287 1.287 28 H -0.286 1.286 29 H 0.142 0.858 30 H 0.418 0.582 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 7.088 4.758 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.147 4.147 3 Si 0.704 3.296 4 C -0.100 4.100 5 C -0.173 4.173 6 C -0.275 4.275 7 C 0.381 3.619 8 O -0.464 6.464 9 N -0.345 5.345 10 C 0.017 3.983 11 H 0.113 0.887 12 C -0.162 4.162 13 C -0.001 4.001 14 H 0.138 0.862 15 O -0.230 6.230 16 C 0.066 3.934 17 C -0.234 4.234 18 C -0.105 4.105 19 C -0.187 4.187 20 C -0.106 4.106 21 C -0.193 4.193 22 C -0.205 4.205 23 C -0.001 4.001 24 O -0.057 6.057 25 H 0.251 0.749 26 H 0.147 0.853 27 H -0.214 1.214 28 H -0.213 1.213 29 H 0.160 0.840 30 H 0.256 0.744 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 2.588 6.759 3.443 8.015 hybrid contribution -0.060 -0.965 -0.184 0.985 sum 2.528 5.793 3.259 7.112 Atomic orbital electron populations 1.86549 1.16272 1.82237 1.50359 1.24690 0.85321 1.12276 0.92376 0.93189 0.77768 0.73701 0.84982 1.22751 1.01421 0.92786 0.93045 1.22567 1.02402 0.95968 0.96321 1.21414 1.11713 0.94905 0.99424 1.17505 0.77017 0.86974 0.80420 1.90803 1.48718 1.37566 1.69276 1.45304 1.56703 1.12392 1.20134 1.21519 0.97191 0.87590 0.91994 0.88659 1.23535 0.96823 1.04368 0.91474 1.24394 0.97249 0.99306 0.79115 0.86197 1.86154 1.79355 1.43501 1.14002 1.19265 0.95126 0.91174 0.87852 1.21483 1.04898 0.95810 1.01184 1.21322 0.97295 0.99798 0.92098 1.21429 1.01741 0.97525 0.98009 1.21289 0.96103 0.94173 0.99044 1.20712 1.05780 1.02606 0.90176 1.23997 0.98026 1.03282 0.95188 1.25344 0.96528 0.84931 0.93297 1.83718 1.56747 1.38899 1.26362 0.74893 0.85349 1.21414 1.21307 0.83991 0.74437 0.87661 0.87390 0.83751 0.83700 0.84222 0.83780 0.85185 0.88685 0.90433 0.71916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.62 12.88 -148.98 -1.92 -1.30 16 2 C -0.04 0.07 2.97 71.24 0.21 0.29 16 3 Si 0.80 -3.39 32.09 68.60 2.20 -1.19 16 4 C -0.05 0.02 6.18 24.76 0.15 0.17 16 5 C -0.15 -0.66 10.90 23.65 0.26 -0.40 16 6 C -0.27 -0.25 6.31 -18.99 -0.12 -0.37 16 7 C 0.59 2.64 7.81 86.65 0.68 3.32 16 8 O -0.58 -8.85 16.58 -4.06 -0.07 -8.91 16 9 N -0.69 2.85 5.25 -443.35 -2.33 0.52 16 10 C 0.12 -0.24 4.32 45.51 0.20 -0.05 16 11 H 0.10 0.30 7.46 -2.39 -0.02 0.28 16 12 C -0.12 0.68 7.66 31.12 0.24 0.92 16 13 C 0.06 -0.21 3.51 31.12 0.11 -0.10 16 14 H 0.12 -1.02 6.03 -2.39 -0.01 -1.03 16 15 O -0.32 -0.84 10.15 -92.45 -0.94 -1.78 16 16 C 0.11 0.35 6.68 22.51 0.15 0.50 16 17 C -0.22 0.07 9.01 22.37 0.20 0.27 16 18 C -0.09 0.10 10.04 22.25 0.22 0.33 16 19 C -0.17 0.07 10.04 22.28 0.22 0.30 16 20 C -0.09 -0.06 10.04 22.25 0.22 0.16 16 21 C -0.17 -0.56 9.99 22.36 0.22 -0.33 16 22 C -0.17 0.27 7.71 31.12 0.24 0.51 16 23 C 0.07 -0.53 11.61 67.39 0.78 0.26 16 24 O -0.16 0.68 8.90 4.46 0.04 0.71 16 25 H 0.40 -3.84 8.70 -74.05 -0.64 -4.49 16 26 H 0.13 -0.20 7.96 -2.38 -0.02 -0.22 16 27 H -0.29 -0.43 7.11 99.48 0.71 0.28 16 28 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 29 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.42 -5.24 7.67 -92.71 -0.71 -5.95 16 31 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.14 -0.75 5.94 -2.91 -0.02 -0.77 16 34 H 0.15 -0.86 8.06 -2.91 -0.02 -0.88 16 35 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 36 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 37 H 0.13 0.25 8.06 -2.91 -0.02 0.23 16 38 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.08 -0.10 8.14 -2.38 -0.02 -0.12 16 40 H 0.27 -5.12 7.47 -2.91 -0.02 -5.14 16 Total: 0.00 -26.20 348.97 0.75 -25.45 By element: Atomic # 1 Polarization: -19.02 SS G_CDS: -0.23 Total: -19.25 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 3.99 Total: 5.75 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -2.33 Total: 0.52 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -2.88 Total: -11.28 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.20 Total: -1.19 kcal Total: -26.20 0.75 -25.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_13456056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.143 kcal (2) G-P(sol) polarization free energy of solvation -26.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds