Wall clock time and date at job start Sat Mar 6 2021 18:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33818 * 122.45216 * 2 1 4 4 C 1.50694 * 124.51984 * 359.95281 * 3 2 1 5 5 O 1.42898 * 109.47661 * 29.99217 * 4 3 2 6 6 Si 1.86301 * 109.47100 * 149.99803 * 4 3 2 7 7 S 1.70616 * 110.95471 * 179.70273 * 3 2 1 8 8 C 1.75836 * 91.56229 * 0.35686 * 7 3 2 9 9 C 1.46588 * 125.45792 * 179.90997 * 8 7 3 10 10 O 1.21703 * 119.99872 * 179.69478 * 9 8 7 11 11 N 1.34774 * 119.99756 * 359.70065 * 9 8 7 12 12 C 1.46496 * 119.99998 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.90631 * 336.24670 * 12 11 9 14 14 C 1.53786 * 113.61991 * 107.49479 * 12 11 9 15 15 C 1.53958 * 87.10800 * 89.19020 * 14 12 11 16 16 H 1.09003 * 113.61292 * 270.84560 * 15 14 12 17 17 O 1.42899 * 113.66845 * 139.89470 * 15 14 12 18 18 C 1.35896 * 117.00298 * 104.65691 * 17 15 14 19 19 C 1.38733 * 120.05719 * 173.77809 * 18 17 15 20 20 C 1.38142 * 119.94573 * 179.74699 * 19 18 17 21 21 C 1.38269 * 120.05321 * 0.51230 * 20 19 18 22 22 C 1.38267 * 120.11199 * 359.76778 * 21 20 19 23 23 C 1.38145 * 120.05335 * 359.97438 * 22 21 20 24 24 C 1.53778 * 87.02125 * 25.36388 * 15 14 12 25 25 C 1.36645 * 109.08405 * 359.64762 * 8 7 3 26 26 H 1.08994 * 109.47435 * 269.99732 * 1 2 3 27 27 H 1.09001 * 109.47328 * 29.99516 * 1 2 3 28 28 H 1.08997 * 109.47716 * 149.99659 * 1 2 3 29 29 H 1.09001 * 109.46726 * 269.99299 * 4 3 2 30 30 H 0.96697 * 113.99344 * 60.00189 * 5 4 3 31 31 H 1.48502 * 109.99734 * 179.97438 * 6 4 3 32 32 H 1.48496 * 109.99737 * 301.31242 * 6 4 3 33 33 H 0.97002 * 120.00329 * 359.97438 * 11 9 8 34 34 H 1.08996 * 113.61330 * 203.66544 * 14 12 11 35 35 H 1.08997 * 113.60965 * 334.57341 * 14 12 11 36 36 H 1.07998 * 120.02468 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.97352 * 180.28190 * 20 19 18 38 38 H 1.07996 * 119.94473 * 179.74469 * 21 20 19 39 39 H 1.07999 * 119.97294 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.02285 * 179.97438 * 23 22 21 41 41 H 1.09000 * 113.61678 * 220.04995 * 24 15 14 42 42 H 1.09002 * 113.61591 * 89.22718 * 24 15 14 43 43 H 1.07999 * 123.34856 * 180.23723 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0010 5 8 0.3748 2.4984 0.6716 6 14 2.7919 3.6830 0.8776 7 16 3.8969 0.7891 0.0083 8 6 3.5936 -0.9428 0.0008 9 6 4.6230 -1.9864 0.0013 10 8 4.2999 -3.1598 0.0013 11 7 5.9271 -1.6465 0.0017 12 6 6.9560 -2.6894 0.0016 13 1 6.5996 -3.6370 0.4056 14 6 7.6906 -2.8301 -1.3422 15 6 8.6851 -1.7773 -0.8198 16 1 8.3932 -0.7515 -1.0447 17 8 10.0453 -2.0555 -1.1581 18 6 10.5983 -1.3121 -2.1522 19 6 11.9485 -1.4379 -2.4452 20 6 12.5071 -0.6848 -3.4597 21 6 11.7240 0.2015 -4.1759 22 6 10.3793 0.3330 -3.8820 23 6 9.8149 -0.4217 -2.8720 24 6 8.2976 -2.2313 0.5974 25 6 2.2445 -1.1601 0.0005 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.4942 2.8500 -1.0290 30 1 0.4249 2.2104 1.5933 31 1 2.2221 5.0544 0.8828 32 1 3.0178 3.2210 2.2706 33 1 6.1846 -0.7113 0.0013 34 1 8.1370 -3.8126 -1.4949 35 1 7.1050 -2.4924 -2.1972 36 1 12.5614 -2.1273 -1.8835 37 1 13.5572 -0.7858 -3.6911 38 1 12.1634 0.7924 -4.9659 39 1 9.7698 1.0263 -4.4426 40 1 8.7645 -0.3183 -2.6426 41 1 8.2021 -1.4104 1.3081 42 1 8.9094 -3.0501 0.9762 43 1 1.8018 -2.1452 0.0001 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_6739946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:58:45 Heat of formation + Delta-G solvation = -7.019781 kcal Electronic energy + Delta-G solvation = -26810.584676 eV Core-core repulsion = 22915.653337 eV Total energy + Delta-G solvation = -3894.931339 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79934 -40.86481 -40.02654 -39.23357 -37.59989 -37.31447 -34.33476 -32.10380 -31.88266 -30.66041 -30.24959 -27.19014 -26.88518 -25.71637 -24.50418 -23.49501 -22.92941 -22.07207 -20.71122 -20.09829 -19.71038 -19.20535 -17.85246 -17.50330 -17.19866 -16.93963 -16.74042 -16.57032 -16.37366 -16.10810 -15.89693 -15.49150 -15.29487 -15.05866 -14.59942 -14.46832 -14.35873 -14.06508 -13.91349 -13.66430 -13.59200 -13.48278 -13.19502 -13.11779 -12.97940 -12.64176 -12.44564 -12.41582 -12.25427 -11.93089 -11.85377 -11.55491 -11.35966 -11.33037 -10.89404 -10.36244 -9.93866 -9.69659 -9.38750 -9.14307 -5.13075 -0.69113 0.28748 0.40560 0.49963 0.69116 1.05484 1.30358 1.54008 1.84480 1.87776 2.00898 2.23582 2.85020 3.22848 3.28967 3.36116 3.53086 3.63650 3.70687 3.74760 3.94482 4.02659 4.08369 4.24265 4.27383 4.33372 4.49221 4.50928 4.55627 4.56659 4.63685 4.66178 4.72784 4.77225 4.80655 4.85355 4.87536 4.92958 4.98832 5.10244 5.32058 5.36884 5.40550 5.42766 5.50351 5.63356 5.88158 6.25022 6.35660 6.49114 6.94817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.109 4.109 3 C -0.236 4.236 4 C -0.038 4.038 5 O -0.530 6.530 6 Si 0.737 3.263 7 S 0.267 5.733 8 C -0.288 4.288 9 C 0.595 3.405 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.122 3.878 13 H 0.103 0.897 14 C -0.165 4.165 15 C 0.053 3.947 16 H 0.117 0.883 17 O -0.314 6.314 18 C 0.111 3.889 19 C -0.173 4.173 20 C -0.088 4.088 21 C -0.169 4.169 22 C -0.087 4.087 23 C -0.216 4.216 24 C -0.125 4.125 25 C -0.058 4.058 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.142 0.858 30 H 0.388 0.612 31 H -0.276 1.276 32 H -0.274 1.274 33 H 0.412 0.588 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 5.786 -0.629 6.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.356 4.356 4 C -0.149 4.149 5 O -0.338 6.338 6 Si 0.638 3.362 7 S 0.536 5.464 8 C -0.407 4.407 9 C 0.383 3.617 10 O -0.448 6.448 11 N -0.349 5.349 12 C 0.017 3.983 13 H 0.121 0.879 14 C -0.204 4.204 15 C -0.003 4.003 16 H 0.134 0.866 17 O -0.228 6.228 18 C 0.066 3.934 19 C -0.192 4.192 20 C -0.106 4.106 21 C -0.187 4.187 22 C -0.105 4.105 23 C -0.234 4.234 24 C -0.163 4.163 25 C -0.092 4.092 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.159 0.841 30 H 0.238 0.762 31 H -0.202 1.202 32 H -0.199 1.199 33 H 0.249 0.751 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.583 6.466 -0.394 7.403 hybrid contribution -2.299 -1.223 0.610 2.674 sum 1.284 5.243 0.217 5.403 Atomic orbital electron populations 1.20608 0.88334 1.03175 1.03009 1.18741 0.98829 0.90559 1.04041 1.24681 0.99598 1.00902 1.10412 1.24661 0.91115 0.94596 1.04502 1.86624 1.27985 1.89225 1.29962 0.94734 0.83341 0.76769 0.81320 1.82323 1.01500 0.95343 1.67193 1.24570 0.97515 0.98644 1.20016 1.17152 0.82298 0.87107 0.75148 1.90842 1.82244 1.20085 1.51608 1.45414 1.04268 1.10414 1.74831 1.21581 0.86963 0.92430 0.97363 0.87924 1.24036 0.97101 1.01181 0.98079 1.24415 0.78829 0.99951 0.97096 0.86560 1.86145 1.28617 1.57420 1.50623 1.19262 0.93057 0.91894 0.89218 1.20710 0.92691 1.04119 1.01666 1.21293 1.00969 0.94494 0.93841 1.21428 0.94524 1.00776 1.01937 1.21318 0.95494 0.97826 0.95850 1.21483 1.01058 1.00709 1.00184 1.23548 0.93644 1.03751 0.95331 1.20758 0.91408 1.00198 0.96823 0.90642 0.89967 0.91983 0.84072 0.76242 1.20185 1.19907 0.75057 0.88258 0.90449 0.85113 0.83738 0.84207 0.83717 0.83935 0.87893 0.86954 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.10 8.67 71.23 0.62 0.72 16 2 C -0.11 -0.04 5.75 -21.05 -0.12 -0.17 16 3 C -0.24 0.64 5.54 24.68 0.14 0.78 16 4 C -0.04 0.18 2.76 71.23 0.20 0.38 16 5 O -0.53 1.31 9.85 -148.98 -1.47 -0.16 16 6 Si 0.74 -4.00 31.30 68.60 2.15 -1.86 16 7 S 0.27 -1.42 19.78 -56.49 -1.12 -2.54 16 8 C -0.29 -0.54 6.45 24.08 0.16 -0.39 16 9 C 0.60 2.96 7.78 86.42 0.67 3.63 16 10 O -0.57 -7.75 16.44 -4.36 -0.07 -7.82 16 11 N -0.70 1.33 5.26 -444.08 -2.34 -1.00 16 12 C 0.12 -0.17 4.32 45.52 0.20 0.02 16 13 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 14 C -0.17 0.21 7.72 31.18 0.24 0.45 16 15 C 0.05 -0.15 3.52 31.18 0.11 -0.04 16 16 H 0.12 -0.77 6.04 -2.39 -0.01 -0.78 16 17 O -0.31 -0.96 10.15 -92.38 -0.94 -1.90 16 18 C 0.11 0.39 6.68 22.51 0.15 0.54 16 19 C -0.17 -0.58 9.99 22.37 0.22 -0.36 16 20 C -0.09 -0.08 10.04 22.25 0.22 0.14 16 21 C -0.17 0.02 10.04 22.28 0.22 0.25 16 22 C -0.09 0.06 10.04 22.25 0.22 0.28 16 23 C -0.22 -0.09 9.01 22.36 0.20 0.11 16 24 C -0.12 0.60 7.65 31.12 0.24 0.84 16 25 C -0.06 -0.19 9.80 21.72 0.21 0.02 16 26 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.08 -0.03 6.41 -2.39 -0.02 -0.05 16 28 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 29 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 30 H 0.39 -2.71 8.66 -74.06 -0.64 -3.35 16 31 H -0.28 -0.35 7.11 99.48 0.71 0.35 16 32 H -0.27 0.21 7.11 99.48 0.71 0.92 16 33 H 0.41 -3.21 7.82 -92.71 -0.72 -3.93 16 34 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.08 -0.06 8.14 -2.39 -0.02 -0.07 16 36 H 0.13 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 38 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 39 H 0.15 -0.77 8.06 -2.91 -0.02 -0.79 16 40 H 0.14 -0.56 5.95 -2.91 -0.02 -0.58 16 41 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 42 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.14 0.68 8.06 -2.91 -0.02 0.66 16 Total: 0.00 -18.81 372.21 -0.15 -18.96 By element: Atomic # 1 Polarization: -10.62 SS G_CDS: -0.27 Total: -10.89 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 3.90 Total: 7.20 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -2.34 Total: -1.00 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -2.48 Total: -9.88 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.15 Total: -1.86 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -1.12 Total: -2.54 kcal Total: -18.81 -0.15 -18.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_6739946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.941 kcal (2) G-P(sol) polarization free energy of solvation -18.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds