Wall clock time and date at job start Sat Mar 6 2021 18:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37942 * 120.06892 * 2 1 4 4 C 1.38381 * 120.13982 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.85053 * 180.02562 * 4 3 2 6 6 C 1.38337 * 120.29626 * 0.02562 * 4 3 2 7 7 C 1.50702 * 119.92501 * 180.02562 * 6 4 3 8 8 O 1.42904 * 109.47016 * 75.00540 * 7 6 4 9 9 Si 1.86303 * 109.46909 * 194.99979 * 7 6 4 10 10 C 1.37975 * 120.14490 * 359.74444 * 6 4 3 11 11 C 1.39558 * 119.85017 * 0.48889 * 10 6 4 12 12 C 1.47852 * 120.14245 * 179.78608 * 11 10 6 13 13 O 1.21555 * 119.99658 * 175.44675 * 12 11 10 14 14 N 1.34776 * 119.99922 * 355.45075 * 12 11 10 15 15 C 1.46503 * 119.99645 * 179.97438 * 14 12 11 16 16 H 1.08999 * 112.85174 * 23.80506 * 15 14 12 17 17 C 1.53776 * 113.61008 * 155.00126 * 15 14 12 18 18 C 1.53778 * 87.08388 * 89.19944 * 17 15 14 19 19 H 1.08998 * 113.61566 * 270.79601 * 18 17 15 20 20 O 1.42895 * 113.61600 * 139.97791 * 18 17 15 21 21 C 1.35901 * 117.00266 * 158.96266 * 20 18 17 22 22 C 1.38741 * 120.05251 * 6.58523 * 21 20 18 23 23 C 1.38137 * 119.94071 * 179.97438 * 22 21 20 24 24 C 1.38267 * 120.05976 * 359.97438 * 23 22 21 25 25 C 1.38261 * 120.11133 * 0.28189 * 24 23 22 26 26 C 1.38151 * 120.05458 * 359.44321 * 25 24 23 27 27 C 1.53781 * 87.08286 * 25.42949 * 18 17 15 28 28 H 1.08998 * 109.47514 * 262.86004 * 1 2 3 29 29 H 1.09004 * 109.47243 * 22.86922 * 1 2 3 30 30 H 1.09005 * 109.46805 * 142.85923 * 1 2 3 31 31 H 1.07995 * 119.92774 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47436 * 89.99413 * 5 4 3 33 33 H 1.08999 * 109.46971 * 210.00145 * 5 4 3 34 34 H 1.09007 * 109.46798 * 329.99473 * 5 4 3 35 35 H 1.08997 * 109.47502 * 315.00017 * 7 6 4 36 36 H 0.96693 * 114.00595 * 59.99787 * 8 7 6 37 37 H 1.48497 * 110.00005 * 180.02562 * 9 7 6 38 38 H 1.48506 * 109.99882 * 301.32250 * 9 7 6 39 39 H 1.08001 * 120.07688 * 180.24877 * 10 6 4 40 40 H 0.96996 * 120.00296 * 359.97438 * 14 12 11 41 41 H 1.08995 * 113.62015 * 334.64581 * 17 15 14 42 42 H 1.09010 * 113.68531 * 203.75852 * 17 15 14 43 43 H 1.07999 * 120.02468 * 359.94817 * 22 21 20 44 44 H 1.08010 * 119.97057 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.94562 * 179.97438 * 24 23 22 46 46 H 1.07997 * 119.97597 * 179.72606 * 25 24 23 47 47 H 1.07998 * 120.02785 * 180.27833 * 26 25 24 48 48 H 1.08998 * 113.61154 * 89.11618 * 27 18 17 49 49 H 1.08994 * 113.61674 * 220.02469 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1938 0.0000 4 6 3.5820 1.1955 0.0005 5 6 4.3304 2.5035 0.0011 6 6 4.2813 0.0019 0.0005 7 6 5.7883 0.0136 0.0017 8 8 6.2609 0.3652 1.3037 9 14 6.4226 -1.6781 -0.4532 10 6 3.6021 -1.1991 0.0053 11 6 2.2066 -1.2080 -0.0001 12 6 1.4723 -2.4912 0.0002 13 8 0.2593 -2.4973 0.0790 14 7 2.1478 -3.6542 -0.0868 15 6 1.4202 -4.9258 -0.0860 16 1 0.3881 -4.8231 -0.4212 17 6 2.1807 -6.0710 -0.7750 18 6 2.8108 -6.3719 0.5951 19 1 3.7337 -5.8227 0.7813 20 8 2.9294 -7.7678 0.8765 21 6 3.8397 -8.1324 1.8174 22 6 4.5047 -7.1624 2.5535 23 6 5.4291 -7.5356 3.5097 24 6 5.6915 -8.8745 3.7340 25 6 5.0340 -9.8429 2.9982 26 6 4.1045 -9.4751 2.0446 27 6 1.5669 -5.7206 1.2223 28 1 -0.3634 -0.1277 1.0197 29 1 -0.3634 0.9469 -0.3994 30 1 -0.3633 -0.8193 -0.6205 31 1 1.6581 2.1290 -0.0004 32 1 4.5104 2.8188 1.0289 33 1 5.2835 2.3769 -0.5124 34 1 3.7386 3.2610 -0.5129 35 1 6.1466 0.7433 -0.7243 36 1 5.9797 -0.2421 2.0015 37 1 7.9076 -1.6801 -0.4550 38 1 5.9150 -2.6871 0.5110 39 1 4.1492 -2.1303 0.0094 40 1 3.1157 -3.6493 -0.1500 41 1 2.8992 -5.7315 -1.5210 42 1 1.5336 -6.8676 -1.1425 43 1 4.3001 -6.1165 2.3786 44 1 5.9468 -6.7809 4.0833 45 1 6.4149 -9.1642 4.4818 46 1 5.2439 -10.8879 3.1721 47 1 3.5879 -10.2321 1.4733 48 1 0.7510 -6.4208 1.4016 49 1 1.7899 -5.0981 2.0888 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_11987230_9599494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:58:56 Heat of formation + Delta-G solvation = -11.100523 kcal Electronic energy + Delta-G solvation = -31129.686300 eV Core-core repulsion = 26989.888142 eV Total energy + Delta-G solvation = -4139.798158 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.01199 -41.34923 -40.29265 -39.28636 -37.82104 -37.45558 -34.72270 -34.42575 -32.96399 -31.97452 -30.73939 -29.35396 -28.59179 -26.91148 -26.23876 -25.56836 -23.86390 -23.58541 -23.16655 -22.51313 -21.14918 -20.48447 -19.59161 -19.05854 -17.70042 -17.49481 -17.24697 -16.81337 -16.71825 -16.54348 -16.32664 -16.24916 -16.09444 -15.69293 -15.52836 -15.14352 -15.03931 -14.63078 -14.56284 -14.41735 -14.12489 -14.00864 -13.96849 -13.63988 -13.58679 -13.38240 -13.14261 -13.10343 -12.84489 -12.75403 -12.62784 -12.55950 -12.49934 -11.97580 -11.92526 -11.78996 -11.57895 -11.37083 -10.77369 -10.59233 -10.28543 -10.01173 -9.91928 -9.64298 -9.20666 -4.96903 -0.27851 0.15264 0.33176 0.43202 1.25922 1.49723 1.67942 1.90306 1.94391 2.18855 2.61320 2.78259 3.27924 3.34637 3.38211 3.44832 3.57634 3.66053 3.68465 3.70320 3.80547 3.87304 3.95321 4.12731 4.18900 4.20034 4.27705 4.44221 4.47484 4.50784 4.51503 4.59270 4.63818 4.65160 4.68693 4.70832 4.73273 4.79672 4.80558 4.85283 4.89671 4.92350 5.02922 5.03591 5.12840 5.25564 5.30838 5.42064 5.43898 5.48827 5.50582 5.56227 5.79466 5.81664 6.34463 6.43065 6.46744 7.06636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.023 4.023 3 C -0.135 4.135 4 C -0.028 4.028 5 C -0.120 4.120 6 C -0.133 4.133 7 C -0.079 4.079 8 O -0.542 6.542 9 Si 0.750 3.250 10 C -0.073 4.073 11 C -0.158 4.158 12 C 0.562 3.438 13 O -0.557 6.557 14 N -0.702 5.702 15 C 0.125 3.875 16 H 0.106 0.894 17 C -0.124 4.124 18 C 0.051 3.949 19 H 0.109 0.891 20 O -0.312 6.312 21 C 0.112 3.888 22 C -0.219 4.219 23 C -0.090 4.090 24 C -0.168 4.168 25 C -0.086 4.086 26 C -0.171 4.171 27 C -0.166 4.166 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.385 0.615 37 H -0.301 1.301 38 H -0.264 1.264 39 H 0.145 0.855 40 H 0.410 0.590 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.148 0.852 47 H 0.135 0.865 48 H 0.100 0.900 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 0.659 -2.178 4.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.024 4.024 3 C -0.153 4.153 4 C -0.029 4.029 5 C -0.177 4.177 6 C -0.134 4.134 7 C -0.188 4.188 8 O -0.350 6.350 9 Si 0.654 3.346 10 C -0.091 4.091 11 C -0.161 4.161 12 C 0.352 3.648 13 O -0.436 6.436 14 N -0.354 5.354 15 C 0.020 3.980 16 H 0.124 0.876 17 C -0.161 4.161 18 C -0.005 4.005 19 H 0.126 0.874 20 O -0.226 6.226 21 C 0.067 3.933 22 C -0.237 4.237 23 C -0.108 4.108 24 C -0.186 4.186 25 C -0.104 4.104 26 C -0.189 4.189 27 C -0.205 4.205 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.234 0.766 37 H -0.229 1.229 38 H -0.190 1.190 39 H 0.162 0.838 40 H 0.248 0.752 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.166 0.834 47 H 0.152 0.848 48 H 0.118 0.882 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.053 0.325 -2.331 3.855 hybrid contribution 0.238 0.334 1.475 1.530 sum 3.292 0.659 -0.856 3.464 Atomic orbital electron populations 1.21046 0.90116 1.03429 1.03020 1.20219 0.96972 0.91949 0.93294 1.21199 0.93694 0.98002 1.02436 1.20226 0.93434 0.95927 0.93269 1.20950 1.00478 0.93023 1.03218 1.20074 0.96384 0.92633 1.04289 1.25170 0.91202 1.14175 0.88275 1.86598 1.76383 1.54999 1.17001 0.94321 0.77754 0.73581 0.88903 1.21295 0.92572 0.98405 0.96861 1.19605 0.93698 0.92633 1.10191 1.18431 0.86826 0.84206 0.75364 1.90746 1.14845 1.87480 1.50573 1.45539 1.10795 1.04523 1.74575 1.21542 0.97815 0.82037 0.96650 0.87602 1.23553 1.00166 0.97084 0.95346 1.24394 0.98557 0.79556 0.98033 0.87371 1.86146 1.55140 1.26908 1.54439 1.19256 0.89990 0.94165 0.89848 1.21438 1.01969 0.99536 1.00779 1.21283 0.96161 0.97073 0.96304 1.21418 1.02269 0.93007 1.01890 1.21315 0.94200 1.00985 0.93867 1.20736 1.02156 0.93618 1.02403 1.24014 0.99009 0.99209 0.98293 0.91416 0.90720 0.90073 0.83679 0.90545 0.90323 0.90195 0.85428 0.76602 1.22875 1.18963 0.83798 0.75241 0.87705 0.86814 0.84573 0.84202 0.84159 0.83445 0.84754 0.88193 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 8.74 71.24 0.62 0.17 16 2 C -0.02 -0.07 5.91 -19.61 -0.12 -0.18 16 3 C -0.14 -0.01 9.31 22.23 0.21 0.19 16 4 C -0.03 0.03 5.89 -19.81 -0.12 -0.09 16 5 C -0.12 0.42 9.53 71.24 0.68 1.10 16 6 C -0.13 0.32 5.25 -19.90 -0.10 0.21 16 7 C -0.08 0.31 2.04 71.24 0.15 0.46 16 8 O -0.54 0.54 12.80 -148.98 -1.91 -1.37 16 9 Si 0.75 -4.21 30.25 68.60 2.08 -2.14 16 10 C -0.07 0.20 8.14 22.53 0.18 0.38 16 11 C -0.16 -0.30 5.87 -20.09 -0.12 -0.41 16 12 C 0.56 2.14 7.72 86.79 0.67 2.82 16 13 O -0.56 -5.83 12.91 -3.89 -0.05 -5.89 16 14 N -0.70 1.53 5.22 -442.89 -2.31 -0.78 16 15 C 0.13 -0.22 4.32 45.52 0.20 -0.03 16 16 H 0.11 0.15 7.46 -2.39 -0.02 0.13 16 17 C -0.12 0.60 7.66 31.12 0.24 0.84 16 18 C 0.05 -0.10 3.46 31.12 0.11 0.01 16 19 H 0.11 -0.50 6.14 -2.39 -0.01 -0.51 16 20 O -0.31 -1.17 10.15 -92.44 -0.94 -2.11 16 21 C 0.11 0.51 6.68 22.51 0.15 0.66 16 22 C -0.22 -0.51 9.00 22.37 0.20 -0.31 16 23 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 24 C -0.17 -0.17 10.04 22.28 0.22 0.06 16 25 C -0.09 -0.13 10.04 22.25 0.22 0.10 16 26 C -0.17 -0.66 9.99 22.37 0.22 -0.43 16 27 C -0.17 0.12 7.71 31.12 0.24 0.36 16 28 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.02 8.04 -2.39 -0.02 0.00 16 30 H 0.08 0.61 5.84 -2.38 -0.01 0.59 16 31 H 0.15 -0.45 8.05 -2.91 -0.02 -0.47 16 32 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.08 -0.33 6.22 -2.39 -0.01 -0.35 16 34 H 0.08 -0.43 8.08 -2.38 -0.02 -0.45 16 35 H 0.13 -0.70 6.48 -2.39 -0.02 -0.71 16 36 H 0.38 -2.36 8.70 -74.06 -0.64 -3.01 16 37 H -0.30 -0.84 7.11 99.48 0.71 -0.13 16 38 H -0.26 1.29 6.67 99.48 0.66 1.95 16 39 H 0.14 -1.06 3.23 -2.91 -0.01 -1.07 16 40 H 0.41 -3.01 6.76 -92.71 -0.63 -3.64 16 41 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 42 H 0.11 -0.53 8.14 -2.38 -0.02 -0.55 16 43 H 0.14 -0.16 6.00 -2.91 -0.02 -0.17 16 44 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 45 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 46 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 47 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 48 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -17.15 394.52 0.67 -16.47 By element: Atomic # 1 Polarization: -9.94 SS G_CDS: -0.28 Total: -10.21 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.08 Total: 6.01 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -2.31 Total: -0.78 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -2.90 Total: -9.36 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.08 Total: -2.14 kcal Total: -17.15 0.67 -16.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_11987230_9599494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.371 kcal (2) G-P(sol) polarization free energy of solvation -17.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds