Wall clock time and date at job start Sat Mar 6 2021 17:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47087 * 2 1 4 4 C 1.50704 * 109.47168 * 120.00187 * 2 1 3 5 5 C 1.35451 * 126.06302 * 245.02723 * 4 2 1 6 6 N 1.35542 * 108.86711 * 180.02562 * 5 4 2 7 7 C 1.37647 * 108.64349 * 359.97438 * 6 5 4 8 8 C 1.46681 * 126.23220 * 180.02562 * 7 6 5 9 9 O 1.21697 * 120.00059 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99666 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99550 * 179.97438 * 10 8 7 12 12 H 1.08993 * 112.90907 * 23.75179 * 11 10 8 13 13 C 1.53787 * 113.61331 * 155.00372 * 11 10 8 14 14 C 1.53782 * 87.17122 * 140.02226 * 13 11 10 15 15 H 1.09001 * 113.61417 * 89.16086 * 14 13 11 16 16 O 1.42901 * 113.61094 * 219.97655 * 14 13 11 17 17 C 1.35904 * 116.99677 * 202.12080 * 16 14 13 18 18 C 1.38733 * 120.05119 * 173.77667 * 17 16 14 19 19 C 1.38146 * 119.93972 * 179.74338 * 18 17 16 20 20 C 1.38270 * 120.05684 * 0.51733 * 19 18 17 21 21 C 1.38269 * 120.11053 * 359.76049 * 20 19 18 22 22 C 1.38140 * 120.05275 * 359.97438 * 21 20 19 23 23 C 1.53778 * 87.08212 * 334.52406 * 14 13 11 24 24 C 1.37872 * 107.53427 * 0.26530 * 7 6 5 25 25 H 0.96703 * 114.00295 * 59.99828 * 1 2 3 26 26 H 1.08998 * 109.46609 * 240.00023 * 2 1 3 27 27 H 1.48496 * 109.99772 * 298.68259 * 3 2 1 28 28 H 1.48498 * 109.99786 * 60.00285 * 3 2 1 29 29 H 1.07997 * 125.56786 * 359.97278 * 5 4 2 30 30 H 0.97001 * 125.67442 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00295 * 0.02562 * 10 8 7 32 32 H 1.09002 * 113.60822 * 25.43490 * 13 11 10 33 33 H 1.08996 * 113.61260 * 254.61562 * 13 11 10 34 34 H 1.07993 * 120.03230 * 359.97438 * 18 17 16 35 35 H 1.07997 * 119.97312 * 180.22942 * 19 18 17 36 36 H 1.07998 * 119.94492 * 179.74190 * 20 19 18 37 37 H 1.07994 * 119.97024 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.02356 * 179.97438 * 22 21 20 39 39 H 1.09002 * 113.61002 * 139.97837 * 23 14 13 40 40 H 1.08999 * 113.61725 * 270.79572 * 23 14 13 41 41 H 1.08007 * 126.45398 * 179.73660 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.6330 -0.1497 2.2444 6 7 2.9056 -1.1031 3.1685 7 6 2.3693 -2.2965 2.7410 8 6 2.4377 -3.5802 3.4473 9 8 1.9214 -4.5698 2.9624 10 7 3.0724 -3.6637 4.6333 11 6 3.1403 -4.9458 5.3390 12 1 3.0304 -5.8024 4.6741 13 6 4.3380 -5.0590 6.2969 14 6 3.3888 -5.7667 7.2783 15 1 3.3479 -6.8475 7.1436 16 8 3.5855 -5.3844 8.6411 17 6 3.1506 -6.2506 9.5938 18 6 3.4235 -6.0060 10.9318 19 6 2.9757 -6.8852 11.8987 20 6 2.2653 -8.0137 11.5330 21 6 1.9970 -8.2627 10.1997 22 6 2.4379 -7.3837 9.2295 23 6 2.2398 -5.0139 6.5871 24 6 1.7608 -2.0666 1.5253 25 1 -0.3934 0.4417 -0.7650 26 1 1.7922 -0.5138 -0.8900 27 1 1.5878 2.4585 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 2.9279 0.8874 2.3060 30 1 3.3969 -0.9669 3.9938 31 1 3.4836 -2.8749 5.0200 32 1 4.7009 -4.0966 6.6578 33 1 5.1368 -5.6996 5.9233 34 1 3.9822 -5.1272 11.2176 35 1 3.1846 -6.6934 12.9408 36 1 1.9197 -8.7020 12.2901 37 1 1.4424 -9.1450 9.9166 38 1 2.2284 -7.5788 8.1881 39 1 1.3438 -5.6186 6.4466 40 1 2.0281 -4.0398 7.0282 41 1 1.2471 -2.7962 0.9167 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12060300_10543058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:24:24 Heat of formation + Delta-G solvation = 4.779395 kcal Electronic energy + Delta-G solvation = -24600.534655 eV Core-core repulsion = 20835.300569 eV Total energy + Delta-G solvation = -3765.234086 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50430 -41.59940 -40.46820 -39.23284 -37.77266 -37.47916 -34.56760 -32.63714 -31.95334 -30.87219 -30.60529 -27.01166 -26.88611 -25.90243 -24.21013 -23.51336 -22.67039 -21.46696 -21.03561 -20.52976 -19.63816 -19.45586 -18.45729 -17.69432 -17.22317 -16.81338 -16.60028 -16.48855 -16.27428 -15.90503 -15.64666 -15.22752 -15.08063 -14.91913 -14.74206 -14.47704 -14.37148 -14.11292 -13.98996 -13.61687 -13.56596 -13.35311 -12.80284 -12.64865 -12.56645 -12.39926 -12.35491 -11.95910 -11.72166 -11.43825 -11.30764 -10.39648 -10.32516 -9.98880 -9.94842 -9.31283 -9.19210 -4.85206 0.32400 0.35563 0.44937 1.36110 1.52323 1.68528 1.78853 2.03704 2.07806 2.20210 2.35143 2.80277 3.25919 3.33902 3.55062 3.63403 3.67667 3.79498 3.88029 3.96383 4.07497 4.13737 4.16855 4.25505 4.29526 4.46395 4.49328 4.53887 4.58805 4.64960 4.72080 4.77522 4.85068 4.86513 4.94110 5.00879 5.05385 5.29889 5.35273 5.45762 5.56968 5.58479 5.71595 5.82910 6.30148 6.42685 6.49555 6.68831 6.99653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.064 4.064 3 Si 0.786 3.214 4 C -0.190 4.190 5 C 0.058 3.942 6 N -0.515 5.515 7 C -0.070 4.070 8 C 0.592 3.408 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.127 3.873 12 H 0.112 0.888 13 C -0.122 4.122 14 C 0.054 3.946 15 H 0.113 0.887 16 O -0.310 6.310 17 C 0.111 3.889 18 C -0.170 4.170 19 C -0.087 4.087 20 C -0.168 4.168 21 C -0.090 4.090 22 C -0.219 4.219 23 C -0.167 4.167 24 C -0.104 4.104 25 H 0.391 0.609 26 H 0.079 0.921 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.212 0.788 30 H 0.438 0.562 31 H 0.413 0.587 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 3.629 1.981 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.172 4.172 3 Si 0.690 3.310 4 C -0.196 4.196 5 C -0.080 4.080 6 N -0.112 5.112 7 C -0.183 4.183 8 C 0.381 3.619 9 O -0.452 6.452 10 N -0.353 5.353 11 C 0.021 3.979 12 H 0.130 0.870 13 C -0.160 4.160 14 C -0.002 4.002 15 H 0.130 0.870 16 O -0.224 6.224 17 C 0.066 3.934 18 C -0.188 4.188 19 C -0.105 4.105 20 C -0.186 4.186 21 C -0.108 4.108 22 C -0.238 4.238 23 C -0.206 4.206 24 C -0.131 4.131 25 H 0.240 0.760 26 H 0.097 0.903 27 H -0.223 1.223 28 H -0.213 1.213 29 H 0.228 0.772 30 H 0.279 0.721 31 H 0.250 0.750 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.720 3.574 2.393 7.156 hybrid contribution -1.315 -0.155 -0.307 1.359 sum 4.404 3.420 2.086 5.953 Atomic orbital electron populations 1.86575 1.19550 1.80688 1.50662 1.24535 0.83150 1.12239 0.97229 0.94285 0.89408 0.70609 0.76743 1.18969 1.07733 0.93711 0.99217 1.22293 1.01096 0.95672 0.88911 1.41816 1.42989 1.06443 1.19984 1.20104 1.12069 0.86779 0.99369 1.17227 0.77578 0.86458 0.80618 1.90844 1.48398 1.37788 1.68152 1.45585 1.56697 1.12631 1.20373 1.22184 0.96970 0.87243 0.91464 0.86962 1.23533 0.96692 1.03273 0.92514 1.23949 0.97831 1.00273 0.78182 0.86969 1.86115 1.77181 1.43945 1.15167 1.19246 0.94712 0.89921 0.89497 1.20720 1.05280 1.02754 0.90083 1.21316 0.95751 0.93380 1.00024 1.21431 1.01447 0.98948 0.96758 1.21301 0.97665 0.98917 0.92910 1.21491 1.04330 0.96585 1.01355 1.24088 0.98310 1.02333 0.95861 1.21252 1.00201 0.96598 0.95049 0.75962 0.90301 1.22316 1.21279 0.77196 0.72056 0.74984 0.87020 0.88104 0.84671 0.83430 0.84156 0.84125 0.84359 0.90793 0.88593 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.82 12.86 -148.98 -1.92 -4.74 16 2 C -0.06 -0.05 3.01 71.24 0.21 0.17 16 3 Si 0.79 -3.24 30.60 68.60 2.10 -1.14 16 4 C -0.19 -0.55 5.46 -20.12 -0.11 -0.66 16 5 C 0.06 -0.22 10.45 83.48 0.87 0.65 16 6 N -0.51 2.52 5.99 -183.62 -1.10 1.42 16 7 C -0.07 -0.27 7.06 40.35 0.28 0.02 16 8 C 0.59 3.57 7.79 86.45 0.67 4.24 16 9 O -0.57 -8.73 16.48 -4.34 -0.07 -8.80 16 10 N -0.70 1.52 5.36 -443.55 -2.38 -0.85 16 11 C 0.13 -0.23 4.25 45.61 0.19 -0.03 16 12 H 0.11 0.16 7.46 -2.39 -0.02 0.14 16 13 C -0.12 0.66 7.65 31.12 0.24 0.90 16 14 C 0.05 -0.09 3.63 31.12 0.11 0.02 16 15 H 0.11 -0.35 6.04 -2.39 -0.01 -0.37 16 16 O -0.31 -0.98 10.15 -92.47 -0.94 -1.92 16 17 C 0.11 0.50 6.68 22.51 0.15 0.65 16 18 C -0.17 -0.60 9.99 22.37 0.22 -0.38 16 19 C -0.09 -0.12 10.04 22.26 0.22 0.10 16 20 C -0.17 -0.20 10.04 22.28 0.22 0.03 16 21 C -0.09 -0.15 10.04 22.25 0.22 0.08 16 22 C -0.22 -0.61 9.01 22.36 0.20 -0.40 16 23 C -0.17 0.16 7.72 31.21 0.24 0.40 16 24 C -0.10 -0.81 10.59 22.57 0.24 -0.57 16 25 H 0.39 -1.26 8.74 -74.06 -0.65 -1.91 16 26 H 0.08 -0.10 7.96 -2.39 -0.02 -0.12 16 27 H -0.30 -0.42 7.11 99.48 0.71 0.29 16 28 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 29 H 0.21 -2.37 6.21 -2.91 -0.02 -2.39 16 30 H 0.44 -5.72 8.19 -92.71 -0.76 -6.48 16 31 H 0.41 -3.78 7.86 -92.71 -0.73 -4.51 16 32 H 0.11 -0.84 8.12 -2.39 -0.02 -0.86 16 33 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 36 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 37 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.14 -0.05 5.95 -2.91 -0.02 -0.07 16 39 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.13 1.43 8.06 -2.91 -0.02 1.40 16 Total: 0.00 -26.09 350.32 -1.10 -27.18 By element: Atomic # 1 Polarization: -15.37 SS G_CDS: -1.00 Total: -16.37 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.21 Total: 5.21 kcal Atomic # 7 Polarization: 4.05 SS G_CDS: -3.48 Total: 0.57 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -2.93 Total: -15.46 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.10 Total: -1.14 kcal Total: -26.09 -1.10 -27.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12060300_10543058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.963 kcal (2) G-P(sol) polarization free energy of solvation -26.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds