Wall clock time and date at job start Sat Mar 6 2021 18:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36417 * 125.80528 * 2 1 4 4 C 1.47386 * 127.18738 * 0.02562 * 3 2 1 5 5 O 1.21613 * 120.00123 * 359.70000 * 4 3 2 6 6 N 1.34772 * 119.99601 * 179.71118 * 4 3 2 7 7 C 1.46505 * 119.99700 * 179.97438 * 6 4 3 8 8 H 1.08999 * 112.90430 * 23.75118 * 7 6 4 9 9 C 1.53781 * 113.61143 * 154.99591 * 7 6 4 10 10 C 1.53784 * 87.07958 * 89.12145 * 9 7 6 11 11 H 1.08999 * 113.61845 * 140.06703 * 10 9 7 12 12 N 1.46507 * 113.61122 * 270.88331 * 10 9 7 13 13 C 1.34773 * 119.99575 * 203.47178 * 12 10 9 14 14 O 1.21513 * 120.00527 * 359.97438 * 13 12 10 15 15 O 1.34639 * 119.99616 * 179.97438 * 13 12 10 16 16 C 1.45206 * 116.99892 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47021 * 179.97438 * 16 15 13 18 18 C 1.38236 * 120.00277 * 269.72923 * 17 16 15 19 19 C 1.38226 * 120.00377 * 179.78944 * 18 17 16 20 20 C 1.38240 * 119.99844 * 0.44045 * 19 18 17 21 21 C 1.38226 * 119.99919 * 359.80775 * 20 19 18 22 22 C 1.38236 * 120.00380 * 359.97438 * 21 20 19 23 23 C 1.53776 * 87.17448 * 25.47028 * 10 9 7 24 24 C 1.47021 * 105.61899 * 179.73760 * 3 2 1 25 25 C 1.34181 * 105.95291 * 0.26042 * 24 3 2 26 26 C 1.50695 * 125.43905 * 179.97438 * 25 24 3 27 27 O 1.42904 * 109.46839 * 64.99589 * 26 25 24 28 28 Si 1.86296 * 109.47468 * 185.00032 * 26 25 24 29 29 O 1.33658 * 125.80296 * 180.19074 * 2 1 3 30 30 H 1.09000 * 109.47179 * 89.99898 * 1 2 3 31 31 H 1.09001 * 109.47072 * 210.00015 * 1 2 3 32 32 H 1.09001 * 109.46925 * 329.99956 * 1 2 3 33 33 H 0.96996 * 120.00640 * 359.97438 * 6 4 3 34 34 H 1.08997 * 113.61652 * 334.57426 * 9 7 6 35 35 H 1.09005 * 113.61557 * 203.66318 * 9 7 6 36 36 H 0.96996 * 119.99762 * 23.47050 * 12 10 9 37 37 H 1.09000 * 109.47070 * 300.00042 * 16 15 13 38 38 H 1.09001 * 109.46626 * 60.00059 * 16 15 13 39 39 H 1.08004 * 119.99728 * 359.97438 * 18 17 16 40 40 H 1.08002 * 120.00205 * 180.27350 * 19 18 17 41 41 H 1.08002 * 119.99919 * 179.83634 * 20 19 18 42 42 H 1.08008 * 120.00171 * 180.02562 * 21 20 19 43 43 H 1.07994 * 120.00669 * 179.97438 * 22 21 20 44 44 H 1.09007 * 113.61050 * 89.07539 * 23 10 9 45 45 H 1.08997 * 113.62144 * 219.97886 * 23 10 9 46 46 H 1.07995 * 127.02257 * 180.24242 * 24 3 2 47 47 H 1.09001 * 109.46937 * 305.00579 * 26 25 24 48 48 H 0.96701 * 113.99293 * 60.00980 * 27 26 25 49 49 H 1.48495 * 110.00000 * 179.97438 * 28 26 25 50 50 H 1.48500 * 109.99932 * 301.32068 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3051 1.1064 0.0000 4 6 1.8740 2.5158 0.0005 5 8 0.6890 2.7892 -0.0045 6 7 2.7931 3.5015 0.0063 7 6 2.3646 4.9025 0.0063 8 1 1.3598 5.0388 0.4061 9 6 3.4027 5.8641 0.6082 10 6 3.9917 5.9888 -0.8069 11 1 4.3018 7.0018 -1.0631 12 7 5.0180 4.9870 -1.1057 13 6 5.9373 5.2284 -2.0612 14 8 5.9147 6.2768 -2.6751 15 8 6.8809 4.3080 -2.3355 16 6 7.8381 4.6353 -3.3771 17 6 8.8099 3.4955 -3.5425 18 6 9.9787 3.4710 -2.8048 19 6 10.8680 2.4233 -2.9533 20 6 10.5929 1.4045 -3.8463 21 6 9.4266 1.4316 -4.5878 22 6 8.5351 2.4770 -4.4360 23 6 2.5967 5.6187 -1.3377 24 6 3.6850 0.5990 0.0065 25 6 3.5859 -0.7391 0.0038 26 6 4.7459 -1.7011 0.0079 27 8 5.4701 -1.5688 1.2327 28 14 4.1077 -3.4441 -0.1511 29 8 2.2889 -1.0840 -0.0036 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.7382 3.2834 0.0105 34 1 4.0764 5.3888 1.3212 35 1 2.9718 6.7917 0.9850 36 1 5.0359 4.1500 -0.6159 37 1 7.3103 4.8025 -4.3161 38 1 8.3818 5.5385 -3.1000 39 1 10.1956 4.2690 -2.1101 40 1 11.7790 2.4019 -2.3737 41 1 11.2890 0.5872 -3.9643 42 1 9.2115 0.6354 -5.2852 43 1 7.6241 2.4984 -5.0156 44 1 1.9457 6.4793 -1.4919 45 1 2.6199 4.9454 -2.1946 46 1 4.5928 1.1839 0.0119 47 1 5.4059 -1.4779 -0.8303 48 1 4.9437 -1.7532 2.0226 49 1 5.2420 -4.4025 -0.1490 50 1 3.1815 -3.7500 0.9687 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_13308374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:06:10 Heat of formation + Delta-G solvation = -63.144195 kcal Electronic energy + Delta-G solvation = -35872.548219 eV Core-core repulsion = 31027.702982 eV Total energy + Delta-G solvation = -4844.845236 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.161 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.80563 -42.04916 -41.08966 -40.12851 -39.43117 -38.16299 -37.49979 -35.12563 -34.47036 -33.71061 -33.11160 -32.91635 -31.87129 -29.45469 -27.76313 -26.83353 -26.51460 -25.39921 -24.23880 -23.56335 -23.02895 -22.29053 -22.02848 -21.49048 -20.44263 -19.79477 -19.02235 -18.29079 -18.05682 -17.75402 -17.71418 -17.47408 -17.07233 -16.84946 -16.37404 -16.26529 -16.08641 -16.06272 -15.83808 -15.71939 -15.50730 -14.85628 -14.71854 -14.47570 -14.26933 -14.26286 -14.19460 -13.96464 -13.93810 -13.85196 -13.59733 -13.54521 -13.36091 -13.02919 -12.95555 -12.85516 -12.18568 -12.16289 -12.11861 -11.97357 -11.82697 -11.74409 -11.59024 -11.22574 -10.98701 -10.75217 -10.37855 -10.19505 -9.89387 -9.89082 -9.62245 -4.95345 0.08411 0.19075 0.43299 0.78497 1.11349 1.15414 1.40197 1.57769 1.68675 1.89968 2.01626 2.17645 2.73792 3.11957 3.15842 3.31465 3.36530 3.45931 3.64742 3.68635 3.72902 3.76522 3.82259 4.02740 4.05861 4.08552 4.19375 4.21727 4.26159 4.36183 4.42391 4.50740 4.55757 4.59176 4.62388 4.65229 4.66958 4.70610 4.73041 4.81711 4.91788 4.94725 4.97059 5.08431 5.09360 5.15818 5.18471 5.28341 5.48607 5.51323 5.53456 5.56358 5.85572 6.00892 6.15605 6.31579 6.34363 7.05593 7.12725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.271 4.271 4 C 0.594 3.406 5 O -0.566 6.566 6 N -0.698 5.698 7 C 0.113 3.887 8 H 0.104 0.896 9 C -0.131 4.131 10 C 0.127 3.873 11 H 0.105 0.895 12 N -0.680 5.680 13 C 0.648 3.352 14 O -0.600 6.600 15 O -0.365 6.365 16 C 0.130 3.870 17 C -0.114 4.114 18 C -0.105 4.105 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.104 4.104 23 C -0.162 4.162 24 C -0.149 4.149 25 C -0.055 4.055 26 C -0.033 4.033 27 O -0.533 6.533 28 Si 0.768 3.232 29 O -0.172 6.172 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.408 0.592 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.059 0.941 46 H 0.174 0.826 47 H 0.156 0.844 48 H 0.390 0.610 49 H -0.281 1.281 50 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 -2.652 0.554 3.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 C -0.276 4.276 4 C 0.383 3.617 5 O -0.446 6.446 6 N -0.350 5.350 7 C 0.008 3.992 8 H 0.122 0.878 9 C -0.169 4.169 10 C 0.023 3.977 11 H 0.123 0.877 12 N -0.341 5.341 13 C 0.401 3.599 14 O -0.490 6.490 15 O -0.279 6.279 16 C 0.056 3.944 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.148 4.148 22 C -0.122 4.122 23 C -0.202 4.202 24 C -0.168 4.168 25 C -0.103 4.103 26 C -0.142 4.142 27 O -0.341 6.341 28 Si 0.671 3.329 29 O -0.069 6.069 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.239 0.761 34 H 0.111 0.889 35 H 0.157 0.843 36 H 0.246 0.754 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.078 0.922 46 H 0.191 0.809 47 H 0.173 0.827 48 H 0.240 0.760 49 H -0.208 1.208 50 H -0.219 1.219 Dipole moment (debyes) X Y Z Total from point charges 1.354 -2.885 0.170 3.191 hybrid contribution 0.649 0.240 1.139 1.333 sum 2.003 -2.645 1.309 3.567 Atomic orbital electron populations 1.20727 0.82508 1.05504 1.05412 1.23239 0.94786 0.82936 0.95456 1.21185 0.94193 0.93458 1.18716 1.17325 0.85188 0.84283 0.74871 1.90766 1.17665 1.84410 1.51790 1.45501 1.09345 1.05323 1.74876 1.22119 1.00360 0.79594 0.97157 0.87793 1.23735 0.96890 1.01417 0.94861 1.22094 0.86015 0.92154 0.97425 0.87663 1.44434 1.29338 1.22310 1.37986 1.18279 0.79541 0.81643 0.80389 1.91008 1.76569 1.27545 1.53899 1.86309 1.40182 1.45164 1.56240 1.21808 0.87251 0.96307 0.88985 1.19541 0.95423 0.96816 0.99603 1.21308 0.93728 0.99064 0.98166 1.21474 1.00196 0.94167 0.99118 1.21610 0.97366 0.98872 0.95274 1.21473 0.94382 0.98746 1.00154 1.21310 0.99841 0.93327 0.97719 1.24034 0.96902 1.01740 0.97480 1.22762 0.96315 0.93738 1.03966 1.22809 0.82827 0.95883 1.08794 1.24510 0.91256 1.07476 0.91001 1.86648 1.40073 1.91530 1.15879 0.93540 0.78318 0.72041 0.88955 1.83692 1.16799 1.35015 1.71372 0.88014 0.88439 0.88392 0.76073 0.88876 0.84267 0.75439 0.90168 0.90023 0.84950 0.84046 0.83922 0.83871 0.84966 0.86144 0.92213 0.80858 0.82691 0.76004 1.20788 1.21894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.89 71.24 0.70 0.74 16 2 C 0.09 0.25 7.37 25.26 0.19 0.43 16 3 C -0.27 -0.86 6.31 -18.99 -0.12 -0.98 16 4 C 0.59 2.91 7.81 86.65 0.68 3.59 16 5 O -0.57 -6.07 14.45 -4.07 -0.06 -6.13 16 6 N -0.70 0.72 5.13 -442.90 -2.27 -1.55 16 7 C 0.11 -0.27 4.33 45.61 0.20 -0.07 16 8 H 0.10 0.01 7.46 -2.39 -0.02 -0.01 16 9 C -0.13 0.94 7.58 31.12 0.24 1.17 16 10 C 0.13 -0.31 4.30 45.52 0.20 -0.11 16 11 H 0.11 0.00 7.50 -2.39 -0.02 -0.02 16 12 N -0.68 0.53 5.12 -567.60 -2.91 -2.38 16 13 C 0.65 3.76 8.75 129.79 1.14 4.89 16 14 O -0.60 -7.46 15.75 19.80 0.31 -7.15 16 15 O -0.37 -1.59 10.25 -55.49 -0.57 -2.16 16 16 C 0.13 0.40 5.60 71.24 0.40 0.79 16 17 C -0.11 -0.24 5.52 -19.86 -0.11 -0.35 16 18 C -0.10 -0.10 9.70 22.27 0.22 0.12 16 19 C -0.13 0.07 10.05 22.27 0.22 0.30 16 20 C -0.11 0.14 10.05 22.27 0.22 0.36 16 21 C -0.13 0.11 10.05 22.27 0.22 0.34 16 22 C -0.10 -0.08 9.70 22.27 0.22 0.13 16 23 C -0.16 0.26 7.70 31.21 0.24 0.50 16 24 C -0.15 0.07 10.48 23.65 0.25 0.32 16 25 C -0.06 0.03 6.18 24.76 0.15 0.18 16 26 C -0.03 0.11 2.97 71.23 0.21 0.32 16 27 O -0.53 0.66 12.88 -148.98 -1.92 -1.26 16 28 Si 0.77 -2.11 32.09 68.60 2.20 0.09 16 29 O -0.17 -0.28 8.90 4.43 0.04 -0.24 16 30 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.10 0.26 6.49 -2.39 -0.02 0.24 16 33 H 0.40 -1.98 5.32 -92.71 -0.49 -2.47 16 34 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 35 H 0.14 -1.49 8.14 -2.38 -0.02 -1.51 16 36 H 0.41 -1.99 6.27 -92.71 -0.58 -2.57 16 37 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 38 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 39 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 40 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 41 H 0.14 -0.76 8.06 -2.91 -0.02 -0.78 16 42 H 0.14 -0.70 8.06 -2.91 -0.02 -0.73 16 43 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 44 H 0.12 -0.49 8.14 -2.38 -0.02 -0.51 16 45 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.17 -0.85 7.74 -2.91 -0.02 -0.88 16 47 H 0.16 -1.06 7.96 -2.39 -0.02 -1.08 16 48 H 0.39 -2.36 8.70 -74.06 -0.64 -3.00 16 49 H -0.28 -0.79 7.11 99.48 0.71 -0.09 16 50 H -0.29 -1.00 7.11 99.48 0.71 -0.30 16 Total: 0.00 -23.40 425.87 -0.39 -23.78 By element: Atomic # 1 Polarization: -15.02 SS G_CDS: -0.67 Total: -15.69 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.46 Total: 12.68 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -5.18 Total: -3.93 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -2.20 Total: -16.93 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.20 Total: 0.09 kcal Total: -23.40 -0.39 -23.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_13308374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.361 kcal (2) G-P(sol) polarization free energy of solvation -23.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds