Wall clock time and date at job start Sat Mar 6 2021 18:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47456 * 2 1 4 4 C 1.50698 * 109.47107 * 120.00221 * 2 1 3 5 5 C 1.34173 * 125.43726 * 65.00038 * 4 2 1 6 6 C 1.47023 * 105.95528 * 179.97438 * 5 4 2 7 7 C 1.47382 * 127.19564 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99715 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99948 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99840 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84979 * 26.92943 * 10 9 7 12 12 C 1.53783 * 113.61595 * 158.12769 * 10 9 7 13 13 C 1.53780 * 87.08055 * 89.20270 * 12 10 9 14 14 H 1.08995 * 113.61840 * 140.06907 * 13 12 10 15 15 N 1.46505 * 113.60931 * 270.88387 * 13 12 10 16 16 C 1.34773 * 120.00333 * 274.80604 * 15 13 12 17 17 O 1.21515 * 119.99867 * 0.02562 * 16 15 13 18 18 O 1.34632 * 120.00353 * 180.02562 * 16 15 13 19 19 C 1.45199 * 117.00295 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.47369 * 180.02562 * 19 18 16 21 21 C 1.38231 * 120.00243 * 89.99790 * 20 19 18 22 22 C 1.38228 * 120.00233 * 180.02562 * 21 20 19 23 23 C 1.38238 * 119.99893 * 0.02562 * 22 21 20 24 24 C 1.38232 * 120.00091 * 0.25811 * 23 22 21 25 25 C 1.38233 * 119.99609 * 359.48768 * 24 23 22 26 26 C 1.53780 * 87.08268 * 25.43341 * 13 12 10 27 27 C 1.36413 * 105.61376 * 0.25586 * 6 5 4 28 28 O 1.33660 * 108.39822 * 359.58113 * 27 6 5 29 29 H 0.96700 * 114.00200 * 59.99693 * 1 2 3 30 30 H 1.09001 * 109.46863 * 240.00258 * 2 1 3 31 31 H 1.48497 * 109.99799 * 60.00116 * 3 2 1 32 32 H 1.48497 * 110.00108 * 181.32128 * 3 2 1 33 33 H 1.08000 * 127.02686 * 359.97438 * 5 4 2 34 34 H 0.96997 * 120.00498 * 359.97438 * 9 7 6 35 35 H 1.08997 * 113.61118 * 334.64972 * 12 10 9 36 36 H 1.09003 * 113.61443 * 203.75164 * 12 10 9 37 37 H 0.97006 * 119.99471 * 94.81466 * 15 13 12 38 38 H 1.08997 * 109.46755 * 60.00050 * 19 18 16 39 39 H 1.09005 * 109.47120 * 300.00494 * 19 18 16 40 40 H 1.08002 * 120.00057 * 0.02562 * 21 20 19 41 41 H 1.08002 * 120.00158 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99729 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00237 * 179.71739 * 24 23 22 44 44 H 1.08007 * 119.99979 * 180.23779 * 25 24 23 45 45 H 1.08998 * 113.61605 * 89.11542 * 26 13 12 46 46 H 1.09002 * 113.61664 * 220.01839 * 26 13 12 47 47 H 1.08002 * 125.80185 * 179.73714 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7551 -2.0122 1.5035 6 6 2.4130 -2.2464 2.7973 7 6 2.5007 -3.5194 3.5348 8 8 1.9923 -4.5243 3.0757 9 7 3.1442 -3.5698 4.7179 10 6 3.2308 -4.8351 5.4512 11 1 3.1811 -5.7068 4.7987 12 6 4.3918 -4.8851 6.4585 13 6 3.4174 -4.2943 7.4912 14 1 3.5193 -4.7282 8.4859 15 7 3.3982 -2.8295 7.5089 16 6 4.3028 -2.1524 8.2435 17 8 5.1347 -2.7570 8.8909 18 8 4.2849 -0.8063 8.2601 19 6 5.2891 -0.1436 9.0729 20 6 5.1142 1.3496 8.9690 21 6 4.2897 2.0125 9.8587 22 6 4.1288 3.3821 9.7630 23 6 4.7921 4.0887 8.7773 24 6 5.6120 3.4251 7.8839 25 6 5.7769 2.0562 7.9828 26 6 2.2828 -4.9153 6.6595 27 6 2.9199 -1.0377 3.1756 28 8 2.6270 -0.1421 2.2276 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8900 31 1 1.5616 2.4678 1.2085 32 1 3.5347 1.7702 -0.0322 33 1 1.2359 -2.7395 0.8970 34 1 3.5500 -2.7685 5.0839 35 1 5.2174 -4.2196 6.2065 36 1 4.7199 -5.8969 6.6968 37 1 2.7343 -2.3469 6.9918 38 1 6.2825 -0.4189 8.7189 39 1 5.1758 -0.4509 10.1125 40 1 3.7712 1.4604 10.6286 41 1 3.4843 3.8999 10.4579 42 1 4.6660 5.1588 8.7023 43 1 6.1265 3.9765 7.1109 44 1 6.4205 1.5381 7.2872 45 1 2.0344 -5.9353 6.9526 46 1 1.4059 -4.2741 6.5697 47 1 3.4672 -0.8389 4.0851 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109458_13456056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:06:43 Heat of formation + Delta-G solvation = -61.079155 kcal Electronic energy + Delta-G solvation = -33309.971901 eV Core-core repulsion = 28620.753831 eV Total energy + Delta-G solvation = -4689.218071 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.90345 -42.08203 -41.12214 -40.16759 -39.45756 -37.90329 -37.48445 -35.21999 -34.46335 -33.71523 -33.00978 -31.90901 -31.89476 -27.80819 -26.95696 -26.85399 -26.14259 -24.65957 -23.60226 -22.88289 -22.39322 -22.22647 -21.23801 -20.83844 -19.83198 -19.00868 -18.68238 -18.28783 -17.88145 -17.60812 -17.42079 -17.31570 -17.08218 -16.46954 -16.36993 -16.15382 -16.05321 -15.93252 -15.78618 -15.58745 -14.88480 -14.77728 -14.45459 -14.31227 -14.23510 -14.20520 -13.98533 -13.85248 -13.63129 -13.47827 -13.34961 -13.06084 -12.72888 -12.24505 -12.18645 -12.18377 -12.12708 -11.84581 -11.75757 -11.53525 -11.38009 -11.10836 -10.50938 -10.46639 -10.22696 -9.93299 -9.92815 -9.92215 -5.05391 0.04976 0.06174 0.39373 0.68111 1.11403 1.16510 1.48738 1.57782 1.67126 1.85797 2.00412 2.08441 2.70585 3.11428 3.22228 3.25183 3.34863 3.45184 3.64853 3.68078 3.70104 3.74463 3.78359 4.00993 4.02865 4.16733 4.17336 4.19133 4.24069 4.32428 4.39430 4.51464 4.52323 4.63488 4.66452 4.68729 4.69363 4.75203 4.88921 4.89567 4.93691 5.01272 5.04559 5.09010 5.22035 5.44579 5.47453 5.49564 5.52578 5.67499 5.97043 6.17075 6.26204 6.81990 6.96442 7.13127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.047 4.047 3 Si 0.814 3.186 4 C -0.028 4.028 5 C -0.140 4.140 6 C -0.260 4.260 7 C 0.594 3.406 8 O -0.571 6.571 9 N -0.698 5.698 10 C 0.111 3.889 11 H 0.098 0.902 12 C -0.145 4.145 13 C 0.134 3.866 14 H 0.100 0.900 15 N -0.685 5.685 16 C 0.648 3.352 17 O -0.596 6.596 18 O -0.366 6.366 19 C 0.131 3.869 20 C -0.113 4.113 21 C -0.105 4.105 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.103 4.103 26 C -0.139 4.139 27 C 0.051 3.949 28 O -0.184 6.184 29 H 0.414 0.586 30 H 0.121 0.879 31 H -0.302 1.302 32 H -0.289 1.289 33 H 0.158 0.842 34 H 0.407 0.593 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.414 0.586 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 5.574 -2.479 6.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.155 4.155 3 Si 0.718 3.282 4 C -0.075 4.075 5 C -0.160 4.160 6 C -0.265 4.265 7 C 0.383 3.617 8 O -0.451 6.451 9 N -0.350 5.350 10 C 0.006 3.994 11 H 0.116 0.884 12 C -0.184 4.184 13 C 0.030 3.970 14 H 0.118 0.882 15 N -0.346 5.346 16 C 0.401 3.599 17 O -0.486 6.486 18 O -0.280 6.280 19 C 0.057 3.943 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.150 4.150 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.121 4.121 26 C -0.178 4.178 27 C -0.019 4.019 28 O -0.081 6.081 29 H 0.267 0.733 30 H 0.139 0.861 31 H -0.229 1.229 32 H -0.216 1.216 33 H 0.175 0.825 34 H 0.244 0.756 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.251 0.749 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.099 0.901 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.574 5.196 -1.513 5.442 hybrid contribution 0.006 -0.324 0.445 0.550 sum 0.581 4.872 -1.068 5.022 Atomic orbital electron populations 1.86419 1.16270 1.82698 1.52064 1.24127 0.86481 1.12592 0.92316 0.94035 0.77030 0.73129 0.83960 1.21757 1.01012 0.92359 0.92402 1.22611 1.01478 0.95809 0.96068 1.21529 1.10666 0.94731 0.99536 1.17344 0.77314 0.86679 0.80397 1.90797 1.48294 1.36979 1.68997 1.45507 1.56417 1.12758 1.20293 1.22073 0.97472 0.86869 0.92949 0.88387 1.23783 0.96409 1.04058 0.94169 1.22002 0.97855 0.76835 1.00320 0.88195 1.44485 1.33827 1.06503 1.49749 1.18251 0.81355 0.81028 0.79257 1.91024 1.40668 1.69582 1.47350 1.86304 1.56235 1.18332 1.67098 1.21790 0.90035 0.87600 0.94835 1.19560 1.00511 0.92970 0.98301 1.21323 0.96927 0.95228 0.98871 1.21475 1.00203 0.94115 0.99236 1.21610 0.95830 1.01296 0.94539 1.21479 0.99138 0.94442 0.99929 1.21322 0.98960 0.94854 0.96969 1.23770 0.96552 1.03868 0.93615 1.25147 0.98032 0.85662 0.93027 1.83740 1.57734 1.39774 1.26808 0.73300 0.86140 1.22936 1.21625 0.82474 0.75635 0.90998 0.85485 0.74873 0.89775 0.90195 0.84979 0.84110 0.84051 0.84034 0.84605 0.84972 0.90132 0.73324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.78 12.86 -148.98 -1.92 -1.13 16 2 C -0.05 0.08 2.96 71.24 0.21 0.29 16 3 Si 0.81 -2.71 32.09 68.60 2.20 -0.51 16 4 C -0.03 -0.15 6.22 24.76 0.15 0.01 16 5 C -0.14 -1.06 10.90 23.65 0.26 -0.80 16 6 C -0.26 -1.39 6.31 -18.99 -0.12 -1.51 16 7 C 0.59 4.03 7.81 86.65 0.68 4.70 16 8 O -0.57 -8.72 16.62 -4.09 -0.07 -8.79 16 9 N -0.70 0.55 4.96 -443.33 -2.20 -1.65 16 10 C 0.11 -0.19 4.28 45.52 0.19 0.01 16 11 H 0.10 0.17 7.54 -2.39 -0.02 0.15 16 12 C -0.15 0.53 7.61 31.12 0.24 0.77 16 13 C 0.13 -0.44 4.00 45.52 0.18 -0.26 16 14 H 0.10 -0.18 8.04 -2.39 -0.02 -0.20 16 15 N -0.69 1.68 4.34 -567.62 -2.47 -0.79 16 16 C 0.65 2.26 8.75 129.79 1.14 3.40 16 17 O -0.60 -6.08 16.07 19.80 0.32 -5.76 16 18 O -0.37 -0.83 10.25 -55.42 -0.57 -1.40 16 19 C 0.13 0.20 5.60 71.24 0.40 0.59 16 20 C -0.11 -0.14 5.52 -19.87 -0.11 -0.25 16 21 C -0.11 -0.08 9.70 22.27 0.22 0.14 16 22 C -0.13 0.06 10.05 22.27 0.22 0.28 16 23 C -0.11 0.11 10.05 22.27 0.22 0.34 16 24 C -0.13 0.12 10.05 22.27 0.22 0.35 16 25 C -0.10 0.01 9.70 22.27 0.22 0.22 16 26 C -0.14 0.67 7.57 31.12 0.24 0.91 16 27 C 0.05 0.00 11.61 67.39 0.78 0.78 16 28 O -0.18 -0.86 8.90 4.40 0.04 -0.82 16 29 H 0.41 -5.41 8.74 -74.06 -0.65 -6.06 16 30 H 0.12 -0.83 7.96 -2.39 -0.02 -0.85 16 31 H -0.30 -1.62 7.11 99.48 0.71 -0.91 16 32 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.41 -2.18 6.17 -92.71 -0.57 -2.76 16 35 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.41 -2.43 7.94 -92.70 -0.74 -3.16 16 38 H 0.08 0.07 8.08 -2.39 -0.02 0.05 16 39 H 0.08 0.14 8.08 -2.38 -0.02 0.12 16 40 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 41 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 42 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 43 H 0.14 -0.67 8.06 -2.91 -0.02 -0.69 16 44 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 45 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.08 -0.31 8.13 -2.39 -0.02 -0.33 16 47 H 0.25 -2.45 7.47 -2.91 -0.02 -2.48 16 Total: 0.00 -30.60 409.94 -0.19 -30.79 By element: Atomic # 1 Polarization: -19.02 SS G_CDS: -0.88 Total: -19.90 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.34 Total: 9.97 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -4.66 Total: -2.44 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -2.19 Total: -17.91 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.20 Total: -0.51 kcal Total: -30.60 -0.19 -30.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109458_13456056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.287 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds