Wall clock time and date at job start Sat Mar 6 2021 18:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99798 * 2 1 4 4 O 1.20817 * 120.00320 * 0.02562 * 3 2 1 5 5 C 1.50710 * 119.99824 * 180.02562 * 3 2 1 6 6 H 1.08993 * 112.84757 * 311.19330 * 5 3 2 7 7 C 1.53779 * 113.61363 * 82.50118 * 5 3 2 8 8 C 1.53784 * 87.07671 * 139.98206 * 7 5 3 9 9 H 1.08999 * 113.69183 * 89.13182 * 8 7 5 10 10 N 1.46499 * 113.61040 * 220.01749 * 8 7 5 11 11 C 1.46504 * 120.00413 * 43.27489 * 10 8 7 12 12 C 1.34781 * 120.00178 * 223.54885 * 10 8 7 13 13 O 1.21716 * 119.99642 * 4.98401 * 12 10 8 14 14 C 1.46564 * 120.00404 * 184.99218 * 12 10 8 15 15 C 1.40849 * 126.58347 * 175.67837 * 14 12 10 16 16 C 1.40092 * 132.86309 * 0.02562 * 15 14 12 17 17 C 1.36452 * 119.25616 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.29660 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47116 * 119.99568 * 18 17 16 20 20 Si 1.86302 * 109.46983 * 239.99436 * 18 17 16 21 21 C 1.40152 * 119.40538 * 359.97438 * 17 16 15 22 22 C 1.35186 * 120.32277 * 359.97438 * 21 17 16 23 23 N 1.36241 * 120.70726 * 0.03820 * 22 21 17 24 24 N 1.40012 * 132.01546 * 180.02562 * 23 22 21 25 25 C 1.30744 * 109.60618 * 179.68747 * 24 23 22 26 26 C 1.53772 * 113.61138 * 180.02562 * 5 3 2 27 27 H 1.08996 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46531 * 299.99896 * 1 2 3 29 29 H 1.09000 * 109.47114 * 60.00051 * 1 2 3 30 30 H 1.08997 * 113.61374 * 25.43396 * 7 5 3 31 31 H 1.09001 * 113.61379 * 254.52965 * 7 5 3 32 32 H 1.09002 * 109.46729 * 357.20194 * 11 10 8 33 33 H 1.08991 * 109.47449 * 117.20227 * 11 10 8 34 34 H 1.08994 * 109.47266 * 237.21157 * 11 10 8 35 35 H 1.08002 * 120.37485 * 359.94169 * 16 15 14 36 36 H 1.09002 * 109.46962 * 359.97438 * 18 17 16 37 37 H 0.96705 * 113.99905 * 60.00105 * 19 18 17 38 38 H 1.48497 * 110.00126 * 179.97438 * 20 18 17 39 39 H 1.48497 * 110.00224 * 301.32209 * 20 18 17 40 40 H 1.08004 * 119.84158 * 180.02562 * 21 17 16 41 41 H 1.07998 * 119.64806 * 180.02562 * 22 21 17 42 42 H 1.07999 * 125.63296 * 180.24933 * 25 24 23 43 43 H 1.09000 * 113.61827 * 105.47142 * 26 5 3 44 44 H 1.09002 * 113.61810 * 334.56302 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0239 0.6363 0.7549 7 6 4.1906 1.1238 -1.3978 8 6 5.1807 2.2271 -0.9885 9 1 6.0813 1.8497 -0.5042 10 7 5.4693 3.1835 -2.0601 11 6 4.3812 3.6989 -2.8948 12 6 6.7367 3.5851 -2.2816 13 8 7.6518 3.0861 -1.6531 14 6 7.0129 4.6227 -3.2792 15 6 8.2644 5.2040 -3.5614 16 6 9.5475 5.0061 -3.0350 17 6 10.5896 5.7378 -3.5253 18 6 11.9796 5.5436 -2.9766 19 8 12.8531 5.1275 -4.0282 20 14 12.5936 7.1491 -2.2581 21 6 10.3559 6.6709 -4.5447 22 6 9.1094 6.8444 -5.0384 23 7 8.0624 6.1188 -4.5552 24 7 6.7016 6.1037 -4.8841 25 6 6.0809 5.2233 -4.1432 26 6 4.1077 2.7142 0.0001 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.5226 1.4153 -2.2083 31 1 4.6609 0.1545 -1.5635 32 1 3.4443 3.2234 -2.6046 33 1 4.2986 4.7771 -2.7591 34 1 4.5910 3.4793 -3.9415 35 1 9.7100 4.2829 -2.2495 36 1 11.9595 4.7814 -2.1976 37 1 12.9199 5.7593 -4.7572 38 1 13.9633 6.9708 -1.7130 39 1 12.5954 8.2050 -3.3023 40 1 11.1757 7.2535 -4.9383 41 1 8.9417 7.5661 -5.8241 42 1 5.0256 4.9974 -4.1853 43 1 4.5112 3.0286 0.9627 44 1 3.4171 3.4407 -0.4281 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109654_11618758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:50:02 Heat of formation + Delta-G solvation = 12.447960 kcal Electronic energy + Delta-G solvation = -30005.191111 eV Core-core repulsion = 25700.643837 eV Total energy + Delta-G solvation = -4304.547274 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.36692 -42.03555 -40.84643 -39.46922 -38.96470 -37.44239 -37.36216 -35.63158 -34.17287 -32.13819 -30.58042 -29.36178 -28.40622 -27.54835 -26.81926 -26.53513 -25.04531 -23.73173 -23.12643 -22.14212 -20.73948 -20.23667 -19.16902 -18.71141 -18.55784 -18.13058 -17.88255 -17.44412 -17.27279 -17.07817 -16.67667 -16.34787 -16.13405 -16.11243 -15.71002 -15.56419 -15.06831 -14.71222 -14.52552 -14.36159 -14.21840 -14.09924 -13.82265 -13.59274 -13.49249 -13.32485 -13.21787 -12.95502 -12.61686 -12.47347 -12.42225 -12.15364 -12.10406 -11.90055 -11.82919 -11.72309 -11.58616 -11.37286 -10.91159 -10.88553 -10.32592 -9.69268 -8.80633 -4.88605 -0.57007 -0.15063 1.00005 1.03420 1.08502 1.21688 1.60479 1.64894 1.88709 2.04653 2.06497 2.43671 3.06897 3.22281 3.25132 3.36533 3.38432 3.54240 3.68889 3.69390 3.77292 3.86734 3.87524 4.05610 4.09197 4.14911 4.27702 4.28436 4.30641 4.37144 4.50591 4.54527 4.57778 4.59547 4.63048 4.70565 4.74455 4.75839 4.90202 4.94201 5.09929 5.14006 5.18000 5.25877 5.35129 5.58602 5.64888 6.28080 6.36931 6.46501 6.67035 7.18333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.104 4.104 6 H 0.150 0.850 7 C -0.124 4.124 8 C 0.124 3.876 9 H 0.120 0.880 10 N -0.599 5.599 11 C 0.054 3.946 12 C 0.599 3.401 13 O -0.585 6.585 14 C -0.339 4.339 15 C 0.153 3.847 16 C -0.114 4.114 17 C -0.050 4.050 18 C -0.084 4.084 19 O -0.541 6.541 20 Si 0.768 3.232 21 C -0.156 4.156 22 C 0.116 3.884 23 N -0.274 5.274 24 N -0.342 5.342 25 C 0.107 3.893 26 C -0.129 4.129 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.390 0.610 38 H -0.293 1.293 39 H -0.254 1.254 40 H 0.191 0.809 41 H 0.205 0.795 42 H 0.244 0.756 43 H 0.088 0.912 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 1.610 -1.197 2.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.123 4.123 6 H 0.168 0.832 7 C -0.162 4.162 8 C 0.021 3.979 9 H 0.138 0.862 10 N -0.329 5.329 11 C -0.087 4.087 12 C 0.391 3.609 13 O -0.467 6.467 14 C -0.354 4.354 15 C 0.032 3.968 16 C -0.134 4.134 17 C -0.056 4.056 18 C -0.191 4.191 19 O -0.350 6.350 20 Si 0.668 3.332 21 C -0.177 4.177 22 C -0.010 4.010 23 N -0.037 5.037 24 N -0.162 5.162 25 C -0.073 4.073 26 C -0.167 4.167 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.142 0.858 37 H 0.240 0.760 38 H -0.220 1.220 39 H -0.179 1.179 40 H 0.208 0.792 41 H 0.222 0.778 42 H 0.259 0.741 43 H 0.107 0.893 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.641 2.627 -1.529 3.106 hybrid contribution -0.144 -0.876 -0.379 0.965 sum -0.785 1.751 -1.908 2.706 Atomic orbital electron populations 1.23524 0.75054 1.05562 1.02479 1.86526 1.24738 1.33162 1.83480 1.23936 0.92368 0.81016 0.70995 1.90665 1.67817 1.37350 1.46670 1.22404 0.86055 1.01327 1.02502 0.83193 1.23420 0.97332 1.00869 0.94595 1.22539 0.97928 0.89377 0.88093 0.86201 1.47459 1.06509 1.44779 1.34150 1.22518 0.90480 1.00504 0.95241 1.17043 0.82416 0.80460 0.80993 1.90735 1.45020 1.58703 1.52259 1.19666 0.92428 1.11996 1.11281 1.19532 0.95544 0.91309 0.90423 1.20663 0.88527 1.01668 1.02534 1.20571 0.96622 0.93642 0.94812 1.25293 0.86269 1.13764 0.93801 1.86682 1.65839 1.49248 1.33246 0.93429 0.81277 0.73050 0.85418 1.21101 0.96835 1.01030 0.98731 1.22196 0.83796 0.95597 0.99366 1.46357 1.08020 1.25340 1.24021 1.77605 0.84404 1.26915 1.27291 1.25708 1.02163 0.89822 0.89588 1.23461 0.97236 0.94831 1.01187 0.85481 0.92125 0.91859 0.88401 0.88098 0.88933 0.90062 0.89688 0.82937 0.85812 0.75952 1.22021 1.17872 0.79247 0.77833 0.74089 0.89331 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.72 10.57 -51.44 -0.54 -1.27 16 3 C 0.47 1.34 7.48 71.24 0.53 1.87 16 4 O -0.54 -4.60 15.65 21.99 0.34 -4.26 16 5 C -0.10 0.26 4.26 -11.01 -0.05 0.22 16 6 H 0.15 -0.95 8.14 -2.39 -0.02 -0.97 16 7 C -0.12 0.45 7.04 31.12 0.22 0.67 16 8 C 0.12 -0.02 4.25 45.53 0.19 0.17 16 9 H 0.12 0.28 7.17 -2.39 -0.02 0.26 16 10 N -0.60 -0.98 3.09 -824.39 -2.55 -3.53 16 11 C 0.05 -0.26 7.47 127.77 0.95 0.69 16 12 C 0.60 4.88 7.64 86.41 0.66 5.54 16 13 O -0.59 -8.33 15.18 -4.40 -0.07 -8.39 16 14 C -0.34 -2.34 6.09 -19.90 -0.12 -2.46 16 15 C 0.15 1.07 6.76 39.49 0.27 1.34 16 16 C -0.11 -0.50 9.35 22.30 0.21 -0.29 16 17 C -0.05 0.07 4.53 -19.82 -0.09 -0.02 16 18 C -0.08 0.22 2.84 71.24 0.20 0.43 16 19 O -0.54 0.22 12.88 -148.98 -1.92 -1.69 16 20 Si 0.77 -3.88 31.97 68.60 2.19 -1.68 16 21 C -0.16 0.85 8.38 22.03 0.18 1.03 16 22 C 0.12 -0.32 11.17 83.30 0.93 0.61 16 23 N -0.27 -1.24 3.86 -187.28 -0.72 -1.96 16 24 N -0.34 -2.01 12.57 -56.61 -0.71 -2.72 16 25 C 0.11 0.29 9.88 85.42 0.84 1.14 16 26 C -0.13 0.15 6.89 31.13 0.21 0.36 16 27 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 29 H 0.06 -0.11 8.13 -2.39 -0.02 -0.13 16 30 H 0.10 -0.42 6.27 -2.39 -0.01 -0.44 16 31 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.09 -0.59 5.67 -2.39 -0.01 -0.61 16 33 H 0.08 -0.53 6.50 -2.39 -0.02 -0.54 16 34 H 0.08 -0.62 6.47 -2.39 -0.02 -0.63 16 35 H 0.15 0.93 7.02 -2.91 -0.02 0.91 16 36 H 0.12 -0.30 7.71 -2.39 -0.02 -0.31 16 37 H 0.39 -3.31 8.08 -74.05 -0.60 -3.91 16 38 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 39 H -0.25 1.16 7.05 99.48 0.70 1.86 16 40 H 0.19 -2.39 7.26 -2.91 -0.02 -2.41 16 41 H 0.20 -1.87 8.06 -2.91 -0.02 -1.89 16 42 H 0.24 -1.22 4.08 -2.91 -0.01 -1.23 16 43 H 0.09 -0.14 8.14 -2.39 -0.02 -0.15 16 44 H 0.09 0.07 6.45 -2.39 -0.02 0.05 16 Total: 0.00 -27.74 364.07 2.89 -24.86 By element: Atomic # 1 Polarization: -12.30 SS G_CDS: 0.51 Total: -11.80 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.35 Total: 12.45 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -3.98 Total: -8.21 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -2.18 Total: -15.61 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.19 Total: -1.68 kcal Total: -27.74 2.89 -24.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_11618758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.303 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds