Wall clock time and date at job start Sat Mar 6 2021 18:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 117.00122 * 2 1 4 4 O 1.20833 * 119.99980 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00473 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84454 * 309.66280 * 5 3 2 7 7 C 1.53781 * 113.61660 * 80.85956 * 5 3 2 8 8 C 1.54049 * 86.98420 * 140.02340 * 7 5 3 9 9 H 1.09002 * 113.61333 * 89.12209 * 8 7 5 10 10 N 1.46502 * 113.69477 * 220.00811 * 8 7 5 11 11 C 1.46504 * 119.99894 * 33.90219 * 10 8 7 12 12 C 1.34773 * 120.00294 * 213.90064 * 10 8 7 13 13 O 1.21588 * 119.99827 * 4.80803 * 12 10 8 14 14 C 1.47563 * 120.00105 * 184.80612 * 12 10 8 15 15 C 1.39830 * 119.99886 * 320.41199 * 14 12 10 16 16 C 1.36569 * 119.99502 * 179.73581 * 15 14 12 17 17 C 1.39816 * 120.00041 * 0.53772 * 16 15 14 18 18 C 1.47562 * 119.99942 * 179.69856 * 17 16 15 19 19 C 1.34976 * 125.27780 * 0.02562 * 18 17 16 20 20 C 1.37796 * 114.70618 * 179.97438 * 19 18 17 21 21 C 1.33749 * 115.07715 * 0.02562 * 20 19 18 22 22 C 1.50694 * 125.11779 * 180.02562 * 21 20 19 23 23 O 1.42901 * 109.47260 * 299.99540 * 22 21 20 24 24 Si 1.86297 * 109.47412 * 179.97438 * 22 21 20 25 25 S 1.75861 * 109.76061 * 359.75213 * 21 20 19 26 26 C 1.39828 * 120.00241 * 359.71023 * 17 16 15 27 27 C 1.36562 * 120.00138 * 0.03163 * 26 17 16 28 28 C 1.53773 * 87.07757 * 334.56805 * 8 7 5 29 29 H 1.09004 * 109.46996 * 60.00235 * 1 2 3 30 30 H 1.09006 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47129 * 300.00389 * 1 2 3 32 32 H 1.08998 * 113.61184 * 254.61641 * 7 5 3 33 33 H 1.09001 * 113.61218 * 25.51885 * 7 5 3 34 34 H 1.09005 * 109.46774 * 26.02718 * 11 10 8 35 35 H 1.08998 * 109.47226 * 146.02327 * 11 10 8 36 36 H 1.09004 * 109.47376 * 266.02930 * 11 10 8 37 37 H 1.07996 * 120.00372 * 359.97438 * 15 14 12 38 38 H 1.07998 * 120.00139 * 180.24864 * 16 15 14 39 39 H 1.08001 * 122.64659 * 359.95933 * 19 18 17 40 40 H 1.07996 * 122.46440 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.47449 * 59.99273 * 22 21 20 42 42 H 0.96696 * 114.00378 * 179.97438 * 23 22 21 43 43 H 1.48507 * 109.99834 * 59.99471 * 24 22 21 44 44 H 1.48501 * 110.00283 * 181.31319 * 24 22 21 45 45 H 1.07998 * 119.99837 * 179.97438 * 26 17 16 46 46 H 1.07997 * 119.99881 * 179.97438 * 27 26 17 47 47 H 1.09002 * 113.61921 * 270.87695 * 28 8 7 48 48 H 1.09008 * 113.61062 * 139.97911 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0228 0.6566 0.7724 7 6 4.1927 1.0839 -1.3920 8 6 5.1834 2.1999 -1.0096 9 1 6.0820 1.8345 -0.5126 10 7 5.4764 3.1277 -2.1048 11 6 4.4358 3.4612 -3.0807 12 6 6.7033 3.6746 -2.2147 13 8 7.5915 3.3320 -1.4583 14 6 6.9687 4.6890 -3.2530 15 6 6.4148 4.5451 -4.5288 16 6 6.6560 5.4867 -5.4880 17 6 7.4660 6.5888 -5.1978 18 6 7.7320 7.6028 -6.2363 19 6 7.2498 7.5730 -7.4966 20 6 7.6365 8.6339 -8.2865 21 6 8.4288 9.5286 -7.6859 22 6 8.9820 10.7706 -8.3356 23 8 9.7824 10.4034 -9.4610 24 14 10.0279 11.7012 -7.1064 25 16 8.7212 9.0413 -6.0216 26 6 8.0241 6.7301 -3.9235 27 6 7.7786 5.7912 -2.9627 28 6 4.1077 2.7137 -0.0382 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.6620 0.1098 -1.5295 33 1 3.5264 1.3535 -2.2115 34 1 3.4547 3.3357 -2.6226 35 1 4.5571 4.4956 -3.4021 36 1 4.5213 2.8002 -3.9432 37 1 5.7931 3.6913 -4.7545 38 1 6.2250 5.3777 -6.4723 39 1 6.6115 6.7801 -7.8576 40 1 7.3235 8.7350 -9.3151 41 1 8.1595 11.4050 -8.6662 42 1 10.1714 11.1548 -9.9290 43 1 11.1529 10.8473 -6.6474 44 1 10.5536 12.9446 -7.7252 45 1 8.6501 7.5812 -3.6995 46 1 8.2101 5.9001 -1.9786 47 1 3.4183 3.4281 -0.4881 48 1 4.5085 3.0545 0.9165 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12109654_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:51:48 Heat of formation + Delta-G solvation = -38.400474 kcal Electronic energy + Delta-G solvation = -31940.903670 eV Core-core repulsion = 27442.165611 eV Total energy + Delta-G solvation = -4498.738059 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.122 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.18670 -41.43411 -40.18358 -39.28255 -38.79335 -37.53174 -37.46615 -35.82207 -33.47471 -32.31368 -30.64454 -29.46580 -28.25397 -27.62277 -26.83881 -26.44276 -24.68627 -23.80767 -23.43238 -22.47420 -21.01580 -20.27904 -20.07680 -19.01574 -18.70903 -18.47670 -18.39225 -18.03368 -17.47961 -17.09251 -16.91143 -16.65674 -16.27274 -16.12468 -15.82942 -15.60452 -15.36245 -14.89715 -14.67915 -14.57892 -14.38880 -14.32167 -14.14766 -14.13157 -14.04492 -13.69858 -13.48098 -13.37640 -13.28096 -13.16301 -12.95073 -12.85668 -12.73565 -12.50090 -12.38005 -12.23776 -12.12954 -11.84361 -11.74015 -11.58415 -11.42815 -11.06933 -10.77710 -10.47409 -10.14068 -9.76805 -9.54367 -8.99930 -5.10238 -0.83649 0.28635 0.34616 0.39627 0.76379 1.05665 1.17669 1.48235 1.51997 1.60693 1.83075 1.84712 1.98525 2.75319 3.15366 3.31067 3.32250 3.38478 3.54038 3.63289 3.72350 3.74031 3.77602 3.84991 4.01909 4.13496 4.22462 4.27522 4.29768 4.32171 4.37527 4.45924 4.47204 4.50212 4.55918 4.58170 4.61694 4.66056 4.70204 4.76525 4.87014 4.89232 4.94062 5.02046 5.09508 5.13614 5.23059 5.28628 5.32897 5.33520 5.46661 5.49914 5.74756 6.20654 6.52216 6.64930 6.96493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.104 4.104 6 H 0.151 0.849 7 C -0.117 4.117 8 C 0.119 3.881 9 H 0.118 0.882 10 N -0.594 5.594 11 C 0.059 3.941 12 C 0.559 3.441 13 O -0.576 6.576 14 C -0.145 4.145 15 C -0.077 4.077 16 C -0.106 4.106 17 C 0.003 3.997 18 C -0.159 4.159 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.185 4.185 22 C -0.037 4.037 23 O -0.552 6.552 24 Si 0.703 3.297 25 S 0.120 5.880 26 C -0.126 4.126 27 C -0.068 4.068 28 C -0.132 4.132 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.112 0.888 42 H 0.399 0.601 43 H -0.285 1.285 44 H -0.252 1.252 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 0.008 -3.600 6.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.123 4.123 6 H 0.169 0.831 7 C -0.155 4.155 8 C 0.016 3.984 9 H 0.136 0.864 10 N -0.324 5.324 11 C -0.083 4.083 12 C 0.349 3.651 13 O -0.457 6.457 14 C -0.149 4.149 15 C -0.095 4.095 16 C -0.126 4.126 17 C 0.001 3.999 18 C -0.276 4.276 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.302 4.302 22 C -0.149 4.149 23 O -0.363 6.363 24 Si 0.606 3.394 25 S 0.388 5.612 26 C -0.145 4.145 27 C -0.087 4.087 28 C -0.170 4.170 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.186 0.814 40 H 0.172 0.828 41 H 0.130 0.870 42 H 0.250 0.750 43 H -0.212 1.212 44 H -0.176 1.176 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.110 0.890 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.933 0.514 -1.647 4.295 hybrid contribution -0.386 -0.203 -1.896 1.945 sum -4.319 0.310 -3.543 5.595 Atomic orbital electron populations 1.23533 0.75006 1.05612 1.02473 1.86521 1.24759 1.33028 1.83449 1.23916 0.92338 0.81045 0.71006 1.90676 1.67833 1.37427 1.46691 1.22401 0.86143 1.00945 1.02815 0.83145 1.23417 0.96905 1.00541 0.94657 1.22631 0.97889 0.90051 0.87879 0.86402 1.47723 1.11203 1.44613 1.28881 1.22434 0.90901 1.02722 0.92219 1.18606 0.82127 0.80958 0.83367 1.90785 1.45462 1.63300 1.46106 1.19947 1.02776 0.96739 0.95397 1.21533 0.97439 0.99705 0.90834 1.21185 0.97814 0.92590 1.00989 1.18429 0.96672 0.93351 0.91420 1.23167 1.06601 0.99716 0.98102 1.20625 1.01852 1.00469 0.91751 1.20198 0.98431 0.93732 1.01908 1.24075 1.05834 1.02779 0.97525 1.24117 0.99908 0.96691 0.94152 1.86555 1.68527 1.38394 1.42857 0.94590 0.82485 0.78224 0.84131 1.84154 1.49135 1.17850 1.10101 1.21003 1.00987 1.00026 0.92492 1.20856 0.95203 0.92636 0.99966 1.23436 0.97379 0.95046 1.01154 0.91810 0.85381 0.92215 0.87497 0.88056 0.90044 0.89460 0.89432 0.81816 0.82210 0.81404 0.82752 0.86996 0.74981 1.21168 1.17633 0.84900 0.85390 0.88952 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.48 10.56 -51.37 -0.54 -1.02 16 3 C 0.47 1.16 7.48 71.24 0.53 1.69 16 4 O -0.54 -4.62 15.66 21.94 0.34 -4.28 16 5 C -0.10 0.31 4.25 -11.02 -0.05 0.27 16 6 H 0.15 -1.02 8.14 -2.39 -0.02 -1.04 16 7 C -0.12 0.61 7.01 31.21 0.22 0.83 16 8 C 0.12 -0.11 4.20 45.61 0.19 0.08 16 9 H 0.12 0.20 7.25 -2.39 -0.02 0.19 16 10 N -0.59 -0.10 3.08 -822.85 -2.53 -2.64 16 11 C 0.06 -0.36 7.61 127.77 0.97 0.61 16 12 C 0.56 3.55 7.33 86.70 0.64 4.19 16 13 O -0.58 -8.36 16.41 -3.99 -0.07 -8.42 16 14 C -0.15 -0.48 5.23 -20.05 -0.10 -0.58 16 15 C -0.08 0.19 7.49 22.26 0.17 0.36 16 16 C -0.11 0.28 9.48 22.26 0.21 0.49 16 17 C 0.00 0.00 5.88 -20.05 -0.12 -0.11 16 18 C -0.16 -0.29 6.37 23.98 0.15 -0.14 16 19 C -0.12 0.05 9.64 21.41 0.21 0.26 16 20 C -0.11 -0.10 10.00 21.14 0.21 0.12 16 21 C -0.18 -0.37 5.76 24.66 0.14 -0.23 16 22 C -0.04 0.04 2.95 71.23 0.21 0.25 16 23 O -0.55 -0.59 12.83 -148.98 -1.91 -2.51 16 24 Si 0.70 -0.60 30.96 68.60 2.12 1.52 16 25 S 0.12 0.29 19.46 -56.49 -1.10 -0.81 16 26 C -0.13 -0.36 9.54 22.26 0.21 -0.15 16 27 C -0.07 -0.31 9.57 22.26 0.21 -0.09 16 28 C -0.13 0.10 6.93 31.12 0.22 0.32 16 29 H 0.06 -0.15 8.13 -2.38 -0.02 -0.16 16 30 H 0.13 -0.99 8.14 -2.38 -0.02 -1.01 16 31 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 32 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.10 -0.64 6.40 -2.39 -0.02 -0.65 16 34 H 0.08 -0.53 6.22 -2.38 -0.01 -0.54 16 35 H 0.09 -0.57 5.79 -2.39 -0.01 -0.58 16 36 H 0.09 -0.93 6.91 -2.38 -0.02 -0.94 16 37 H 0.16 -1.32 5.34 -2.91 -0.02 -1.34 16 38 H 0.16 -1.31 6.74 -2.91 -0.02 -1.33 16 39 H 0.17 -1.01 6.88 -2.91 -0.02 -1.03 16 40 H 0.15 -0.26 8.06 -2.91 -0.02 -0.29 16 41 H 0.11 -0.68 7.96 -2.38 -0.02 -0.70 16 42 H 0.40 -2.93 8.74 -74.06 -0.65 -3.58 16 43 H -0.29 -2.05 7.11 99.48 0.71 -1.34 16 44 H -0.25 -0.31 7.11 99.48 0.71 0.39 16 45 H 0.13 0.17 7.26 -2.91 -0.02 0.14 16 46 H 0.13 0.65 8.05 -2.91 -0.02 0.63 16 47 H 0.09 0.14 6.55 -2.39 -0.02 0.12 16 48 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 Total: 0.00 -25.06 407.46 2.15 -22.91 By element: Atomic # 1 Polarization: -14.46 SS G_CDS: 0.41 Total: -14.04 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.42 Total: 9.28 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -2.53 Total: -2.64 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -2.18 Total: -16.22 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.12 Total: 1.52 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.10 Total: -0.81 kcal Total: -25.06 2.15 -22.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12109654_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.491 kcal (2) G-P(sol) polarization free energy of solvation -25.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds