Wall clock time and date at job start Sun Mar 7 2021 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37870 * 126.45613 * 2 1 4 4 C 1.46677 * 126.23502 * 0.02562 * 3 2 1 5 5 O 1.21693 * 120.00050 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99924 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99979 * 180.02562 * 6 4 3 8 8 H 1.09005 * 112.84759 * 23.80009 * 7 6 4 9 9 C 1.53782 * 113.61648 * 154.99976 * 7 6 4 10 10 C 1.53785 * 87.07924 * 139.97967 * 9 7 6 11 11 H 1.08999 * 113.61070 * 220.01763 * 10 9 7 12 12 O 1.42897 * 113.61254 * 89.20436 * 10 9 7 13 13 C 1.42894 * 114.00093 * 150.00022 * 12 10 9 14 14 C 1.53005 * 109.47487 * 59.99251 * 13 12 10 15 15 C 1.53006 * 109.47526 * 179.97438 * 13 12 10 16 16 C 1.52998 * 109.47059 * 299.99772 * 13 12 10 17 17 C 1.53783 * 87.08193 * 334.56577 * 10 9 7 18 18 N 1.37654 * 107.53287 * 179.87747 * 3 2 1 19 19 C 1.35536 * 108.64308 * 0.39546 * 18 3 2 20 20 C 1.50700 * 125.56409 * 179.79192 * 19 18 3 21 21 O 1.42895 * 109.47244 * 64.98398 * 20 19 18 22 22 Si 1.86302 * 109.47020 * 184.98014 * 20 19 18 23 23 C 1.35453 * 108.87146 * 359.75432 * 19 18 3 24 24 H 1.09002 * 109.47152 * 269.70988 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71088 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71069 * 1 2 3 27 27 H 0.97004 * 120.00258 * 0.02562 * 6 4 3 28 28 H 1.08996 * 113.61600 * 254.52860 * 9 7 6 29 29 H 1.08996 * 113.61251 * 25.43583 * 9 7 6 30 30 H 1.09004 * 109.46611 * 60.00443 * 14 13 12 31 31 H 1.08999 * 109.47416 * 179.97438 * 14 13 12 32 32 H 1.08993 * 109.47145 * 300.00644 * 14 13 12 33 33 H 1.09000 * 109.46812 * 59.99561 * 15 13 12 34 34 H 1.08994 * 109.47233 * 179.97438 * 15 13 12 35 35 H 1.08998 * 109.46554 * 299.99744 * 15 13 12 36 36 H 1.08992 * 109.47541 * 59.99832 * 16 13 12 37 37 H 1.09006 * 109.47393 * 180.02562 * 16 13 12 38 38 H 1.09002 * 109.47273 * 299.99878 * 16 13 12 39 39 H 1.08992 * 113.61487 * 270.88364 * 17 10 9 40 40 H 1.09005 * 113.60736 * 139.97724 * 17 10 9 41 41 H 0.96997 * 125.68165 * 180.17283 * 18 3 2 42 42 H 1.08994 * 109.47042 * 304.98007 * 20 19 18 43 43 H 0.96707 * 114.00439 * 59.99861 * 21 20 19 44 44 H 1.48504 * 110.00101 * 58.68145 * 22 20 19 45 45 H 1.48496 * 109.99982 * 179.97438 * 22 20 19 46 46 H 1.07999 * 126.06995 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 0.0005 5 8 0.7027 2.7766 0.0015 6 7 2.8037 3.4999 0.0010 7 6 2.3679 4.8985 0.0021 8 1 1.3646 5.0289 0.4078 9 6 3.4039 5.8662 0.5980 10 6 3.0210 6.8437 -0.5258 11 1 3.8727 7.3733 -0.9527 12 8 1.9408 7.7143 -0.1837 13 6 1.9934 8.9875 -0.8303 14 6 1.9522 8.7914 -2.3472 15 6 0.7945 9.8317 -0.3930 16 6 3.2894 9.7028 -0.4437 17 6 2.5888 5.6136 -1.3413 18 7 3.6284 0.6625 0.0028 19 6 3.6218 -0.6928 -0.0043 20 6 4.8434 -1.5753 -0.0086 21 8 5.5627 -1.3988 1.2134 22 14 4.3222 -3.3565 -0.1707 23 6 2.3380 -1.1247 -0.0062 24 1 -0.3633 -0.0052 1.0277 25 1 -0.3633 -0.8874 -0.5183 26 1 -0.3633 0.8926 -0.5094 27 1 3.7501 3.2868 0.0006 28 1 3.1450 6.2236 1.5946 29 1 4.4295 5.5035 0.5305 30 1 1.0288 8.2819 -2.6227 31 1 1.9919 9.7626 -2.8404 32 1 2.8060 8.1900 -2.6590 33 1 0.8235 9.9714 0.6876 34 1 0.8349 10.8030 -0.8859 35 1 -0.1286 9.3219 -0.6689 36 1 4.1433 9.1014 -0.7555 37 1 3.3294 10.6742 -0.9365 38 1 3.3188 9.8426 0.6370 39 1 3.3916 5.1819 -1.9389 40 1 1.6718 5.7672 -1.9102 41 1 4.4191 1.2243 0.0058 42 1 5.4832 -1.3060 -0.8490 43 1 5.0535 -1.6203 2.0052 44 1 3.5457 -3.5467 -1.4221 45 1 5.5179 -4.2371 -0.1767 46 1 2.0136 -2.1548 -0.0119 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_13940406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:52:01 Heat of formation + Delta-G solvation = -48.826139 kcal Electronic energy + Delta-G solvation = -25929.834810 eV Core-core repulsion = 22208.567919 eV Total energy + Delta-G solvation = -3721.266891 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.62373 -41.27641 -40.01635 -38.20603 -37.66943 -34.97988 -33.66621 -33.22380 -31.54820 -28.52824 -28.38372 -28.22063 -27.22830 -26.70918 -25.13031 -22.56967 -21.88805 -21.54541 -20.70710 -20.01080 -19.44295 -18.09839 -18.00777 -16.97755 -16.82334 -16.55913 -16.34862 -15.88587 -15.85756 -15.42159 -15.20034 -14.91153 -14.74326 -14.43656 -14.29221 -14.13181 -13.96387 -13.66971 -13.55258 -13.52592 -13.44282 -13.08676 -12.99796 -12.89795 -12.76918 -12.69014 -12.58548 -12.19224 -12.00550 -11.97201 -11.76617 -11.20287 -11.06090 -10.65612 -10.49703 -10.21872 -9.83327 -9.21363 -4.91176 0.27928 1.23037 1.51503 1.72410 1.90958 2.02037 2.21448 2.22201 2.53030 3.41012 3.47268 3.52973 3.57131 3.73561 3.80199 3.87346 3.93978 3.98699 4.08418 4.12442 4.20068 4.24231 4.41869 4.60728 4.61093 4.62439 4.70227 4.71977 4.74812 4.77293 4.80477 4.85950 4.89114 4.89300 4.91643 4.98563 5.05262 5.14518 5.16315 5.30549 5.32297 5.32571 5.41398 5.62260 5.84049 6.29659 6.34735 6.46504 6.67607 7.05241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.086 4.086 3 C -0.071 4.071 4 C 0.585 3.415 5 O -0.565 6.565 6 N -0.708 5.708 7 C 0.126 3.874 8 H 0.089 0.911 9 C -0.135 4.135 10 C 0.066 3.934 11 H 0.101 0.899 12 O -0.377 6.377 13 C 0.100 3.900 14 C -0.174 4.174 15 C -0.141 4.141 16 C -0.176 4.176 17 C -0.166 4.166 18 N -0.513 5.513 19 C 0.034 3.966 20 C -0.053 4.053 21 O -0.554 6.554 22 Si 0.802 3.198 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.409 0.591 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.427 0.573 42 H 0.117 0.883 43 H 0.399 0.601 44 H -0.287 1.287 45 H -0.294 1.294 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 0.238 0.559 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.184 4.184 4 C 0.374 3.626 5 O -0.444 6.444 6 N -0.358 5.358 7 C 0.021 3.979 8 H 0.107 0.893 9 C -0.173 4.173 10 C 0.008 3.992 11 H 0.119 0.881 12 O -0.296 6.296 13 C 0.061 3.939 14 C -0.232 4.232 15 C -0.198 4.198 16 C -0.233 4.233 17 C -0.205 4.205 18 N -0.111 5.111 19 C -0.085 4.085 20 C -0.163 4.163 21 O -0.362 6.362 22 Si 0.706 3.294 23 C -0.231 4.231 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.246 0.754 28 H 0.097 0.903 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.267 0.733 42 H 0.134 0.866 43 H 0.250 0.750 44 H -0.213 1.213 45 H -0.221 1.221 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.908 0.026 -0.173 4.912 hybrid contribution 0.820 0.900 -0.531 1.328 sum 5.728 0.926 -0.704 5.845 Atomic orbital electron populations 1.20339 0.89263 1.02714 1.02458 1.20185 0.96297 0.91382 1.01624 1.20126 0.84595 0.92989 1.20717 1.17310 0.85701 0.83889 0.75651 1.90820 1.17771 1.83820 1.51966 1.45773 1.09504 1.05680 1.74885 1.22454 0.99396 0.78412 0.97655 0.89317 1.23625 1.00046 0.94219 0.99396 1.22823 0.90479 0.89679 0.96249 0.88126 1.87973 1.47267 1.25925 1.68471 1.21714 0.96662 0.83281 0.92214 1.22451 1.02359 1.03175 0.95187 1.21807 0.96400 0.99414 1.02172 1.22438 0.96794 1.01587 1.02465 1.24005 1.02649 0.96770 0.97065 1.41807 1.06709 1.06788 1.55754 1.21325 0.97111 0.83330 1.06722 1.25033 0.91568 1.09149 0.90563 1.86474 1.42614 1.91179 1.15890 0.92964 0.79603 0.71098 0.85697 1.20843 0.90761 0.99524 1.11938 0.91134 0.90178 0.92429 0.75442 0.90344 0.85820 0.92898 0.90398 0.91763 0.92187 0.89499 0.92735 0.91414 0.90351 0.92087 0.87402 0.92169 0.73304 0.86571 0.75042 1.21343 1.22145 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 9.84 71.24 0.70 0.17 16 2 C -0.09 -0.48 6.21 -19.56 -0.12 -0.60 16 3 C -0.07 -0.34 7.06 40.35 0.28 -0.06 16 4 C 0.59 4.63 7.79 86.45 0.67 5.30 16 5 O -0.56 -9.17 14.39 -4.33 -0.06 -9.23 16 6 N -0.71 -0.50 5.35 -443.99 -2.38 -2.88 16 7 C 0.13 0.32 4.18 45.52 0.19 0.51 16 8 H 0.09 0.88 7.46 -2.38 -0.02 0.86 16 9 C -0.13 0.36 7.66 31.12 0.24 0.60 16 10 C 0.07 -0.06 2.88 31.12 0.09 0.03 16 11 H 0.10 -0.44 5.54 -2.39 -0.01 -0.45 16 12 O -0.38 -1.62 9.92 -148.98 -1.48 -3.09 16 13 C 0.10 0.05 1.11 -10.79 -0.01 0.04 16 14 C -0.17 0.15 8.38 71.98 0.60 0.75 16 15 C -0.14 -0.07 8.84 71.98 0.64 0.57 16 16 C -0.18 0.45 8.38 71.98 0.60 1.05 16 17 C -0.17 -0.07 7.71 31.12 0.24 0.17 16 18 N -0.51 0.78 5.99 -171.93 -1.03 -0.25 16 19 C 0.03 -0.06 6.46 41.34 0.27 0.21 16 20 C -0.05 0.24 3.08 71.24 0.22 0.46 16 21 O -0.55 2.36 12.88 -148.98 -1.92 0.44 16 22 Si 0.80 -3.93 30.56 68.60 2.10 -1.83 16 23 C -0.21 -0.09 9.27 22.01 0.20 0.12 16 24 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.06 0.62 6.47 -2.38 -0.02 0.61 16 27 H 0.41 -2.56 7.86 -92.71 -0.73 -3.29 16 28 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.12 -1.06 8.12 -2.39 -0.02 -1.07 16 30 H 0.05 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.06 -0.13 7.02 -2.39 -0.02 -0.15 16 33 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.07 -0.28 6.24 -2.39 -0.01 -0.30 16 37 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 38 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.11 -0.37 8.14 -2.39 -0.02 -0.38 16 40 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 41 H 0.43 -2.96 8.19 -92.71 -0.76 -3.72 16 42 H 0.12 -0.53 7.96 -2.39 -0.02 -0.55 16 43 H 0.40 -4.49 8.70 -74.05 -0.64 -5.13 16 44 H -0.29 -0.27 7.11 99.48 0.71 0.43 16 45 H -0.29 -0.60 7.11 99.48 0.71 0.11 16 46 H 0.17 -0.73 6.19 -2.91 -0.02 -0.75 16 Total: 0.00 -20.29 369.62 -1.04 -21.33 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: -1.09 Total: -13.82 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.82 Total: 9.33 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -3.41 Total: -3.13 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -3.46 Total: -11.88 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: 2.10 Total: -1.83 kcal Total: -20.29 -1.04 -21.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_13940406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.498 kcal (2) G-P(sol) polarization free energy of solvation -20.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds