Wall clock time and date at job start Sun Mar 7 2021 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35989 * 117.00402 * 2 1 4 4 C 1.38670 * 120.00252 * 179.97438 * 3 2 1 5 5 C 1.38158 * 119.99780 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99876 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47397 * 105.02280 * 6 5 4 8 8 Si 1.86303 * 109.47132 * 345.01865 * 6 5 4 9 9 C 1.38672 * 119.99886 * 0.02562 * 5 4 3 10 10 O 1.35984 * 119.99865 * 180.02562 * 9 5 4 11 11 C 1.42904 * 116.99797 * 180.02562 * 10 9 5 12 12 C 1.50701 * 109.46573 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00608 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99550 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99749 * 180.02562 * 14 12 11 16 16 H 1.09001 * 112.85275 * 23.80472 * 15 14 12 17 17 C 1.53777 * 113.61369 * 154.99851 * 15 14 12 18 18 C 1.53784 * 87.08125 * 89.19893 * 17 15 14 19 19 H 1.09000 * 113.61155 * 270.80238 * 18 17 15 20 20 O 1.42899 * 113.61403 * 139.97892 * 18 17 15 21 21 C 1.42905 * 113.99778 * 151.52904 * 20 18 17 22 22 C 1.52997 * 109.46921 * 60.00172 * 21 20 18 23 23 C 1.52999 * 109.46728 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47264 * 300.00074 * 21 20 18 25 25 C 1.53783 * 87.17284 * 25.38924 * 18 17 15 26 26 C 1.38719 * 120.00235 * 0.27402 * 9 5 4 27 27 C 1.38109 * 119.99628 * 359.44983 * 26 9 5 28 28 H 1.08997 * 109.46836 * 60.00016 * 1 2 3 29 29 H 1.08994 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46784 * 300.00123 * 1 2 3 31 31 H 1.07990 * 120.00179 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.46699 * 225.02530 * 6 5 4 33 33 H 0.96695 * 113.99707 * 60.00071 * 7 6 5 34 34 H 1.48504 * 109.99930 * 300.00580 * 8 6 5 35 35 H 1.48498 * 109.99897 * 61.32277 * 8 6 5 36 36 H 1.08999 * 109.47521 * 60.00146 * 11 10 9 37 37 H 1.08999 * 109.46935 * 299.98942 * 11 10 9 38 38 H 0.96997 * 120.00309 * 0.02562 * 14 12 11 39 39 H 1.09000 * 113.61621 * 334.65332 * 17 15 14 40 40 H 1.08998 * 113.69372 * 203.75841 * 17 15 14 41 41 H 1.09000 * 109.47140 * 60.00032 * 22 21 20 42 42 H 1.09001 * 109.47230 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47375 * 300.00014 * 22 21 20 44 44 H 1.09001 * 109.47362 * 60.00784 * 23 21 20 45 45 H 1.09002 * 109.46716 * 180.02562 * 23 21 20 46 46 H 1.09000 * 109.47486 * 300.00062 * 23 21 20 47 47 H 1.09001 * 109.46832 * 60.00108 * 24 21 20 48 48 H 1.09002 * 109.47153 * 179.97438 * 24 21 20 49 49 H 1.08996 * 109.46952 * 300.00089 * 24 21 20 50 50 H 1.09003 * 113.61151 * 89.15644 * 25 18 17 51 51 H 1.08993 * 113.61672 * 220.06100 * 25 18 17 52 52 H 1.07999 * 120.00316 * 179.70568 * 26 9 5 53 53 H 1.08000 * 119.99870 * 180.27517 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4313 1.2842 0.0005 5 6 4.0585 2.5152 0.0000 6 6 5.5634 2.5940 0.0012 7 8 6.0219 2.9666 -1.3000 8 14 6.2720 0.9325 0.4572 9 6 3.3032 3.6781 -0.0005 10 8 3.9205 4.8898 -0.0016 11 6 3.0805 6.0459 -0.0015 12 6 3.9348 7.2874 -0.0021 13 8 5.1438 7.1917 -0.0021 14 7 3.3551 8.5042 -0.0027 15 6 4.1855 9.7111 -0.0039 16 1 5.1824 9.5387 -0.4096 17 6 3.4824 10.9420 -0.5999 18 6 2.9665 11.2364 0.8186 19 1 2.0142 10.7569 1.0451 20 8 2.9833 12.6246 1.1572 21 6 1.9862 13.0029 2.1085 22 6 2.1957 12.2192 3.4057 23 6 2.0975 14.5017 2.3951 24 6 0.5986 12.6927 1.5436 25 6 4.1868 10.4600 1.3413 26 6 1.9179 3.6056 0.0052 27 6 1.2909 2.3750 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0194 0.3785 0.0005 32 1 5.8876 3.3390 0.7278 33 1 5.6916 3.8233 -1.6030 34 1 5.8025 0.5337 1.8085 35 1 5.8634 -0.0859 -0.5434 36 1 2.4519 6.0383 0.8889 37 1 2.4507 6.0374 -0.8911 38 1 2.3882 8.5808 -0.0023 39 1 2.6927 10.6932 -1.3088 40 1 4.1697 11.6977 -0.9801 41 1 3.1842 12.4402 3.8082 42 1 1.4354 12.5080 4.1315 43 1 2.1168 11.1513 3.2019 44 1 1.9485 15.0603 1.4710 45 1 1.3373 14.7901 3.1210 46 1 3.0861 14.7222 2.7977 47 1 0.5197 11.6248 1.3398 48 1 -0.1619 12.9809 2.2694 49 1 0.4495 13.2510 0.6194 50 1 5.0682 11.0830 1.4933 51 1 3.9650 9.8226 2.1971 52 1 1.3297 4.5113 0.0096 53 1 0.2124 2.3185 0.0000 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_4974302.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:53:27 Heat of formation + Delta-G solvation = -127.187350 kcal Electronic energy + Delta-G solvation = -33447.510427 eV Core-core repulsion = 28867.143306 eV Total energy + Delta-G solvation = -4580.367121 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -41.96479 -41.44913 -40.49297 -39.82438 -38.43748 -37.99246 -36.99985 -34.72376 -33.42954 -32.92080 -31.13611 -29.50115 -28.44309 -28.35597 -28.07865 -26.68801 -26.64816 -25.37890 -23.87108 -22.51193 -21.99765 -21.23846 -20.43526 -19.62738 -18.91983 -18.55799 -18.14344 -17.83831 -17.52506 -17.44677 -16.86847 -16.76358 -16.66456 -16.11768 -15.99792 -15.76779 -15.60865 -15.55276 -15.27621 -14.83811 -14.61922 -14.51629 -14.19751 -14.12728 -13.97848 -13.68009 -13.57288 -13.46898 -13.39325 -13.13042 -13.10136 -12.89160 -12.82332 -12.66787 -12.61604 -12.53594 -12.36842 -12.23361 -11.75450 -11.63963 -11.55432 -11.31831 -11.25087 -11.13441 -11.04092 -10.41799 -10.25284 -10.19823 -8.95051 -4.87555 -0.08274 0.19976 1.30844 1.35963 1.38721 1.58158 1.88798 2.21328 2.41121 2.48545 2.72679 3.38649 3.43628 3.45880 3.51587 3.60297 3.79451 3.82284 3.88337 3.90238 3.92315 3.97561 3.98355 4.02329 4.05928 4.10680 4.11113 4.26168 4.32560 4.32595 4.32814 4.55464 4.62291 4.65314 4.66977 4.73645 4.73942 4.78587 4.81494 4.86290 4.86827 4.90755 4.95489 4.97079 4.99326 5.04982 5.06315 5.17252 5.27845 5.33470 5.34286 5.44575 6.04060 6.28916 6.38631 6.41567 6.53463 7.07340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.088 3.912 4 C -0.142 4.142 5 C -0.118 4.118 6 C -0.085 4.085 7 O -0.544 6.544 8 Si 0.811 3.189 9 C 0.098 3.902 10 O -0.310 6.310 11 C 0.036 3.964 12 C 0.517 3.483 13 O -0.564 6.564 14 N -0.693 5.693 15 C 0.122 3.878 16 H 0.089 0.911 17 C -0.132 4.132 18 C 0.065 3.935 19 H 0.108 0.892 20 O -0.381 6.381 21 C 0.098 3.902 22 C -0.174 4.174 23 C -0.141 4.141 24 C -0.176 4.176 25 C -0.166 4.166 26 C -0.154 4.154 27 C -0.159 4.159 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.372 0.628 34 H -0.267 1.267 35 H -0.287 1.287 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.420 0.580 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.087 0.913 51 H 0.071 0.929 52 H 0.176 0.824 53 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 3.817 1.593 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.043 3.957 4 C -0.161 4.161 5 C -0.120 4.120 6 C -0.193 4.193 7 O -0.351 6.351 8 Si 0.712 3.288 9 C 0.053 3.947 10 O -0.223 6.223 11 C -0.041 4.041 12 C 0.303 3.697 13 O -0.442 6.442 14 N -0.347 5.347 15 C 0.016 3.984 16 H 0.107 0.893 17 C -0.170 4.170 18 C 0.007 3.993 19 H 0.126 0.874 20 O -0.301 6.301 21 C 0.060 3.940 22 C -0.231 4.231 23 C -0.198 4.198 24 C -0.233 4.233 25 C -0.205 4.205 26 C -0.172 4.172 27 C -0.177 4.177 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.220 0.780 34 H -0.193 1.193 35 H -0.214 1.214 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.258 0.742 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.106 0.894 51 H 0.090 0.910 52 H 0.193 0.807 53 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.314 2.368 1.771 8.824 hybrid contribution -1.980 1.016 -0.050 2.226 sum -10.294 3.383 1.721 10.972 Atomic orbital electron populations 1.23387 0.75967 1.05718 1.02639 1.86081 1.23871 1.26686 1.89013 1.18992 0.91699 0.85647 0.99360 1.20153 0.92882 0.96880 1.06150 1.19553 0.96819 0.90602 1.04984 1.25370 0.91152 1.14151 0.88585 1.86653 1.73887 1.42312 1.32202 0.92490 0.90040 0.69869 0.76382 1.18681 0.91565 0.84240 1.00259 1.86093 1.35332 1.11644 1.89266 1.22748 0.92620 0.81686 1.07063 1.20492 0.88367 0.85243 0.75555 1.90783 1.16605 1.87212 1.49585 1.45324 1.10992 1.03610 1.74782 1.21580 0.95722 0.83618 0.97500 0.89271 1.23533 1.01214 0.95714 0.96585 1.23814 0.97949 0.82191 0.95335 0.87441 1.88034 1.55552 1.24938 1.61543 1.21669 0.88180 0.95701 0.88468 1.22448 1.02576 1.00524 0.97576 1.21805 1.02720 0.92976 1.02345 1.22441 0.96172 1.02586 1.02127 1.24010 1.00330 0.98670 0.97525 1.21469 0.92110 1.00038 1.03604 1.21437 1.01688 0.90686 1.03902 0.91192 0.86776 0.91123 0.85904 0.90356 0.77951 1.19260 1.21396 0.85674 0.85408 0.74151 0.88509 0.88311 0.92816 0.90647 0.91883 0.92207 0.89830 0.92649 0.91254 0.90558 0.92067 0.89425 0.91045 0.80707 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -2.08 10.50 -93.42 -0.98 -3.06 16 3 C 0.09 0.55 6.69 22.49 0.15 0.70 16 4 C -0.14 -1.37 8.59 22.35 0.19 -1.17 16 5 C -0.12 -0.97 5.28 -19.78 -0.10 -1.08 16 6 C -0.08 -0.68 2.33 71.24 0.17 -0.52 16 7 O -0.54 -5.31 12.65 -148.98 -1.89 -7.20 16 8 Si 0.81 4.61 30.40 68.60 2.09 6.70 16 9 C 0.10 0.37 6.62 22.49 0.15 0.51 16 10 O -0.31 -1.06 8.56 -74.34 -0.64 -1.69 16 11 C 0.04 -0.21 5.22 71.24 0.37 0.16 16 12 C 0.52 0.15 7.91 87.66 0.69 0.85 16 13 O -0.56 -6.70 16.10 16.01 0.26 -6.45 16 14 N -0.69 4.15 5.26 -439.75 -2.32 1.83 16 15 C 0.12 -0.26 4.33 45.58 0.20 -0.06 16 16 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 17 C -0.13 0.63 7.66 31.12 0.24 0.87 16 18 C 0.06 -0.26 2.68 31.12 0.08 -0.17 16 19 H 0.11 -0.88 5.59 -2.39 -0.01 -0.90 16 20 O -0.38 -0.37 10.00 -148.98 -1.49 -1.86 16 21 C 0.10 -0.22 1.12 -10.80 -0.01 -0.23 16 22 C -0.17 0.59 8.36 71.98 0.60 1.19 16 23 C -0.14 0.27 8.84 71.98 0.64 0.91 16 24 C -0.18 0.96 8.38 71.98 0.60 1.56 16 25 C -0.17 0.25 7.64 31.18 0.24 0.49 16 26 C -0.15 0.34 9.03 22.35 0.20 0.54 16 27 C -0.16 0.08 9.03 22.35 0.20 0.28 16 28 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 29 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 31 H 0.12 1.38 4.93 -2.92 -0.01 1.37 16 32 H 0.08 0.60 7.82 -2.39 -0.02 0.58 16 33 H 0.37 2.60 8.60 -74.06 -0.64 1.96 16 34 H -0.27 -2.18 7.11 99.48 0.71 -1.47 16 35 H -0.29 -3.22 6.81 99.48 0.68 -2.54 16 36 H 0.13 -1.50 7.65 -2.39 -0.02 -1.52 16 37 H 0.13 -1.57 7.67 -2.39 -0.02 -1.59 16 38 H 0.42 -5.78 8.70 -92.71 -0.81 -6.59 16 39 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.06 -0.29 7.01 -2.39 -0.02 -0.31 16 44 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.07 -0.55 6.23 -2.39 -0.01 -0.56 16 48 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 50 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 52 H 0.18 -1.94 6.29 -2.91 -0.02 -1.96 16 53 H 0.17 -1.16 6.29 -2.91 -0.02 -1.17 16 Total: 0.00 -25.14 424.17 0.26 -24.88 By element: Atomic # 1 Polarization: -18.53 SS G_CDS: -0.50 Total: -19.03 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.72 Total: 5.88 kcal Atomic # 7 Polarization: 4.15 SS G_CDS: -2.32 Total: 1.83 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -4.73 Total: -20.26 kcal Atomic # 14 Polarization: 4.61 SS G_CDS: 2.09 Total: 6.70 kcal Total: -25.14 0.26 -24.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_4974302.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.304 kcal (2) G-P(sol) polarization free energy of solvation -25.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds