Wall clock time and date at job start Sun Mar 7 2021 00:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 C 1.53005 * 109.47249 * 240.00115 * 2 1 3 5 5 O 1.42897 * 109.47047 * 119.99775 * 2 1 3 6 6 C 1.42906 * 113.99981 * 60.00340 * 5 2 1 7 7 H 1.09002 * 112.84540 * 18.80002 * 6 5 2 8 8 C 1.53784 * 113.61503 * 149.99841 * 6 5 2 9 9 C 1.53779 * 87.07938 * 89.19939 * 8 6 5 10 10 H 1.09003 * 113.61343 * 270.79999 * 9 8 6 11 11 N 1.46499 * 113.61443 * 139.97950 * 9 8 6 12 12 C 1.34781 * 119.99780 * 154.99339 * 11 9 8 13 13 O 1.21278 * 120.00132 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99589 * 179.97438 * 12 11 9 15 15 N 1.46499 * 109.47326 * 180.02562 * 14 12 11 16 16 C 1.36836 * 125.06368 * 265.03421 * 15 14 12 17 17 C 1.34239 * 109.93876 * 179.46858 * 16 15 14 18 18 C 1.50702 * 126.50423 * 179.90309 * 17 16 15 19 19 O 1.42900 * 109.47187 * 105.79026 * 18 17 16 20 20 Si 1.86304 * 109.46653 * 345.79817 * 18 17 16 21 21 C 1.46496 * 106.99515 * 0.57586 * 17 16 15 22 22 C 1.39595 * 134.03201 * 179.33740 * 21 17 16 23 23 C 1.36663 * 119.75973 * 179.97438 * 22 21 17 24 24 C 1.38793 * 120.53069 * 0.02562 * 23 22 21 25 25 C 1.37796 * 120.66319 * 359.97438 * 24 23 22 26 26 C 1.37686 * 125.06279 * 84.99866 * 15 14 12 27 27 C 1.53778 * 113.68739 * 247.53534 * 6 5 2 28 28 H 1.08995 * 109.47028 * 300.00405 * 1 2 3 29 29 H 1.09006 * 109.47006 * 60.00153 * 1 2 3 30 30 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47004 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47098 * 299.99790 * 3 2 1 33 33 H 1.08994 * 109.47043 * 60.00070 * 3 2 1 34 34 H 1.08998 * 109.46738 * 299.99903 * 4 2 1 35 35 H 1.08992 * 109.47184 * 59.99740 * 4 2 1 36 36 H 1.08998 * 109.46895 * 180.02562 * 4 2 1 37 37 H 1.09000 * 113.61478 * 334.65116 * 8 6 5 38 38 H 1.08994 * 113.60898 * 203.74760 * 8 6 5 39 39 H 0.96993 * 119.99894 * 335.00251 * 11 9 8 40 40 H 1.09007 * 109.46764 * 60.01275 * 14 12 11 41 41 H 1.08994 * 109.47932 * 300.00596 * 14 12 11 42 42 H 1.08007 * 125.03309 * 359.97380 * 16 15 14 43 43 H 1.08995 * 109.47792 * 225.79710 * 18 17 16 44 44 H 0.96703 * 113.99813 * 300.01125 * 19 18 17 45 45 H 1.48499 * 110.00227 * 58.67697 * 20 18 17 46 46 H 1.48503 * 109.99805 * 179.97438 * 20 18 17 47 47 H 1.07992 * 120.11854 * 359.97295 * 22 21 17 48 48 H 1.08001 * 119.73757 * 180.02562 * 23 22 21 49 49 H 1.07992 * 119.66635 * 179.97438 * 24 23 22 50 50 H 1.08002 * 120.10599 * 179.97438 * 25 24 23 51 51 H 1.08998 * 113.61437 * 156.32476 * 27 6 5 52 52 H 1.08997 * 113.62014 * 25.41813 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 1.2523 -2.4451 0.3106 8 6 2.5838 -2.9379 2.0079 9 6 1.8410 -2.5616 3.3008 10 1 2.2329 -1.6671 3.7849 11 7 1.6723 -3.6830 4.2282 12 6 1.5203 -3.4498 5.5470 13 8 1.5227 -2.3116 5.9657 14 6 1.3462 -4.6033 6.5009 15 7 1.2014 -4.0909 7.8657 16 6 2.2213 -3.9599 8.7685 17 6 1.7521 -3.4507 9.9186 18 6 2.5524 -3.1560 11.1610 19 8 2.7360 -1.7443 11.2856 20 14 4.2140 -3.9900 11.0417 21 6 0.3115 -3.2511 9.7422 22 6 -0.7097 -2.7734 10.5653 23 6 -1.9895 -2.7085 10.0902 24 6 -2.2824 -3.1143 8.7957 25 6 -1.2896 -3.5890 7.9664 26 6 0.0190 -3.6686 8.4308 27 6 0.6068 -2.2980 2.4219 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 3.6107 -2.5741 1.9726 38 1 2.4979 -3.9924 1.7462 39 1 1.6701 -4.5932 3.8933 40 1 2.2193 -5.2538 6.4475 41 1 0.4548 -5.1685 6.2290 42 1 3.2528 -4.2196 8.5807 43 1 2.0192 -3.5315 12.0344 44 1 3.2047 -1.3415 10.5419 45 1 4.9380 -3.5100 9.8372 46 1 5.0133 -3.7065 12.2608 47 1 -0.4893 -2.4563 11.5738 48 1 -2.7792 -2.3384 10.7272 49 1 -3.2986 -3.0573 8.4347 50 1 -1.5277 -3.9028 6.9608 51 1 -0.0193 -3.1777 2.2735 52 1 0.0378 -1.4178 2.7210 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12113340_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:55:20 Heat of formation + Delta-G solvation = -15.657712 kcal Electronic energy + Delta-G solvation = -32349.319094 eV Core-core repulsion = 28089.274453 eV Total energy + Delta-G solvation = -4260.044641 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -42.46116 -41.39024 -40.20426 -38.30338 -37.97522 -37.49627 -34.83656 -34.02992 -33.29703 -31.31662 -30.10223 -29.04983 -28.51117 -28.46820 -26.78431 -26.10869 -24.96072 -23.57011 -22.57190 -21.89077 -21.62494 -20.59322 -20.24488 -18.58984 -18.46541 -18.07987 -17.59461 -17.21949 -16.80859 -16.64002 -16.29047 -16.15580 -16.04210 -15.89537 -15.48819 -15.28370 -14.94955 -14.71930 -14.58160 -14.51617 -14.28308 -14.24596 -13.97845 -13.73948 -13.58687 -13.47819 -13.28207 -13.14495 -12.99962 -12.83989 -12.75017 -12.60404 -12.58326 -12.42043 -12.24223 -12.02082 -11.85934 -11.79926 -11.60483 -11.21846 -11.03041 -10.53387 -10.39126 -10.32270 -10.14593 -9.00006 -8.50698 -4.89169 0.30136 0.82086 1.39277 1.41548 1.46898 1.65358 1.74775 2.05283 2.17193 2.44735 3.13571 3.34105 3.45086 3.51163 3.52808 3.62314 3.72037 3.76461 3.79795 3.83633 3.87307 3.88498 3.92183 4.01873 4.10311 4.14667 4.33575 4.39573 4.46685 4.48611 4.55657 4.61771 4.66372 4.69090 4.71814 4.74423 4.79093 4.83127 4.83227 4.85743 4.92898 4.94717 5.01019 5.02344 5.09128 5.22550 5.26906 5.27849 5.38131 5.66928 5.83328 5.88889 5.92415 6.19138 6.27820 6.34723 6.39737 6.63922 7.04725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 C -0.140 4.140 4 C -0.179 4.179 5 O -0.353 6.353 6 C 0.067 3.933 7 H 0.084 0.916 8 C -0.147 4.147 9 C 0.131 3.869 10 H 0.119 0.881 11 N -0.720 5.720 12 C 0.490 3.510 13 O -0.513 6.513 14 C 0.091 3.909 15 N -0.465 5.465 16 C 0.066 3.934 17 C -0.194 4.194 18 C -0.037 4.037 19 O -0.531 6.531 20 Si 0.682 3.318 21 C -0.086 4.086 22 C -0.065 4.065 23 C -0.146 4.146 24 C -0.097 4.097 25 C -0.127 4.127 26 C 0.109 3.891 27 C -0.171 4.171 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.401 0.599 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.168 0.832 43 H 0.114 0.886 44 H 0.374 0.626 45 H -0.261 1.261 46 H -0.257 1.257 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.114 0.886 51 H 0.091 0.909 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -6.633 -6.433 9.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.068 3.932 3 C -0.197 4.197 4 C -0.236 4.236 5 O -0.272 6.272 6 C 0.008 3.992 7 H 0.102 0.898 8 C -0.186 4.186 9 C 0.027 3.973 10 H 0.137 0.863 11 N -0.372 5.372 12 C 0.274 3.726 13 O -0.386 6.386 14 C -0.035 4.035 15 N -0.149 5.149 16 C -0.058 4.058 17 C -0.201 4.201 18 C -0.147 4.147 19 O -0.337 6.337 20 Si 0.583 3.417 21 C -0.090 4.090 22 C -0.083 4.083 23 C -0.165 4.165 24 C -0.116 4.116 25 C -0.148 4.148 26 C 0.005 3.995 27 C -0.210 4.210 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.236 0.764 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.185 0.815 43 H 0.132 0.868 44 H 0.222 0.778 45 H -0.186 1.186 46 H -0.181 1.181 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.132 0.868 51 H 0.109 0.891 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.446 -5.810 -5.730 8.173 hybrid contribution -0.263 0.554 -1.083 1.245 sum 0.183 -5.256 -6.813 8.607 Atomic orbital electron populations 1.22476 0.95356 1.02565 1.03050 1.21582 0.93324 0.93257 0.85066 1.21777 1.02081 0.93061 1.02772 1.22470 1.02352 1.00872 0.97940 1.87994 1.73446 1.22511 1.43277 1.22731 0.95381 0.83593 0.97529 0.89780 1.23625 1.00395 0.99849 0.94691 1.22532 0.96552 0.90651 0.87593 0.86301 1.45989 1.74432 1.10253 1.06564 1.21062 0.76999 0.91247 0.83263 1.90817 1.47810 1.22885 1.77126 1.21608 1.06421 0.95039 0.80472 1.43200 1.06263 1.55538 1.09854 1.21582 0.92913 1.02389 0.88955 1.20584 0.93144 1.09809 0.96578 1.24289 1.07610 0.85670 0.97144 1.86591 1.79282 1.19742 1.48045 0.95380 0.75496 0.90500 0.80304 1.18939 0.92930 1.03765 0.93377 1.20307 0.91467 0.97434 0.99137 1.20669 0.96558 1.03048 0.96221 1.20822 0.98451 0.98504 0.93830 1.19949 0.89667 1.05243 0.99943 1.18168 0.87223 1.01090 0.93062 1.24007 0.97583 1.02824 0.96573 0.91633 0.91402 0.92240 0.91687 0.90902 0.91656 0.92166 0.91250 0.91562 0.89676 0.88495 0.76415 0.85898 0.86410 0.81453 0.86847 0.77811 1.18591 1.18138 0.85916 0.85940 0.85764 0.86797 0.89053 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.14 8.38 37.16 0.31 0.45 16 2 C 0.11 -0.02 1.11 -90.61 -0.10 -0.12 16 3 C -0.14 0.04 8.84 37.16 0.33 0.37 16 4 C -0.18 0.23 8.38 37.16 0.31 0.54 16 5 O -0.35 -0.47 9.92 -35.23 -0.35 -0.82 16 6 C 0.07 -0.07 2.88 -25.92 -0.07 -0.14 16 7 H 0.08 -0.18 5.54 -51.93 -0.29 -0.46 16 8 C -0.15 0.30 7.66 -25.92 -0.20 0.11 16 9 C 0.13 -0.04 4.18 -67.12 -0.28 -0.32 16 10 H 0.12 0.36 7.46 -51.93 -0.39 -0.03 16 11 N -0.72 1.51 5.35 -53.02 -0.28 1.22 16 12 C 0.49 0.34 7.90 -10.98 -0.09 0.25 16 13 O -0.51 -3.16 16.02 5.56 0.09 -3.07 16 14 C 0.09 -0.20 6.48 -5.19 -0.03 -0.23 16 15 N -0.47 -0.75 2.27 -115.71 -0.26 -1.01 16 16 C 0.07 0.09 9.89 -16.73 -0.17 -0.07 16 17 C -0.19 -0.54 5.58 -102.71 -0.57 -1.11 16 18 C -0.04 -0.06 3.06 36.01 0.11 0.05 16 19 O -0.53 -1.97 12.88 -35.23 -0.45 -2.43 16 20 Si 0.68 -0.08 30.80 -169.99 -5.24 -5.31 16 21 C -0.09 -0.39 6.35 -105.13 -0.67 -1.05 16 22 C -0.06 -0.26 10.05 -39.64 -0.40 -0.65 16 23 C -0.15 -0.42 9.97 -39.95 -0.40 -0.82 16 24 C -0.10 -0.24 10.01 -39.54 -0.40 -0.64 16 25 C -0.13 -0.37 10.00 -39.43 -0.39 -0.76 16 26 C 0.11 0.41 6.80 -83.99 -0.57 -0.16 16 27 C -0.17 0.14 7.71 -25.92 -0.20 -0.06 16 28 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.06 -0.07 7.02 -51.93 -0.36 -0.43 16 31 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 34 H 0.06 -0.11 6.24 -51.93 -0.32 -0.43 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 37 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.10 -0.42 8.12 -51.93 -0.42 -0.84 16 39 H 0.40 -2.24 8.73 -40.82 -0.36 -2.60 16 40 H 0.12 -0.68 8.12 -51.92 -0.42 -1.10 16 41 H 0.12 -0.52 8.14 -51.93 -0.42 -0.94 16 42 H 0.17 -0.22 6.27 -52.48 -0.33 -0.55 16 43 H 0.11 0.13 7.96 -51.93 -0.41 -0.28 16 44 H 0.37 0.52 8.70 45.56 0.40 0.91 16 45 H -0.26 -0.40 7.01 56.52 0.40 0.00 16 46 H -0.26 -0.81 7.11 56.52 0.40 -0.41 16 47 H 0.12 0.36 8.06 -52.49 -0.42 -0.06 16 48 H 0.12 0.12 8.06 -52.49 -0.42 -0.31 16 49 H 0.12 0.04 8.06 -52.49 -0.42 -0.39 16 50 H 0.11 0.11 8.06 -52.49 -0.42 -0.31 16 51 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 52 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 422.55 15.07 6.37 6.37 Total: 0.00 -10.43 422.55 -12.06 -22.49 By element: Atomic # 1 Polarization: -4.59 SS G_CDS: -8.45 Total: -13.04 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.48 Total: -4.39 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -0.55 Total: 0.21 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.71 Total: -6.32 kcal Atomic # 14 Polarization: -0.08 SS G_CDS: -5.24 Total: -5.31 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -10.43 -12.06 -22.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.837 kcal (2) G-P(sol) polarization free energy of solvation -10.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds