Wall clock time and date at job start Sun Mar 7 2021 00:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 C 1.53005 * 109.47249 * 240.00115 * 2 1 3 5 5 O 1.42897 * 109.47047 * 119.99775 * 2 1 3 6 6 C 1.42906 * 113.99981 * 60.00340 * 5 2 1 7 7 H 1.09002 * 112.84540 * 18.80002 * 6 5 2 8 8 C 1.53784 * 113.61503 * 149.99841 * 6 5 2 9 9 C 1.53779 * 87.07938 * 89.19939 * 8 6 5 10 10 H 1.09003 * 113.61343 * 270.79999 * 9 8 6 11 11 N 1.46499 * 113.61443 * 139.97950 * 9 8 6 12 12 C 1.34781 * 119.99780 * 154.99339 * 11 9 8 13 13 O 1.21278 * 120.00132 * 0.02562 * 12 11 9 14 14 C 1.50698 * 119.99589 * 179.97438 * 12 11 9 15 15 N 1.46499 * 109.47326 * 180.02562 * 14 12 11 16 16 C 1.36836 * 125.06368 * 265.03421 * 15 14 12 17 17 C 1.34239 * 109.93876 * 179.46858 * 16 15 14 18 18 C 1.50702 * 126.50423 * 179.90309 * 17 16 15 19 19 O 1.42900 * 109.47187 * 105.79026 * 18 17 16 20 20 Si 1.86304 * 109.46653 * 345.79817 * 18 17 16 21 21 C 1.46496 * 106.99515 * 0.57586 * 17 16 15 22 22 C 1.39595 * 134.03201 * 179.33740 * 21 17 16 23 23 C 1.36663 * 119.75973 * 179.97438 * 22 21 17 24 24 C 1.38793 * 120.53069 * 0.02562 * 23 22 21 25 25 C 1.37796 * 120.66319 * 359.97438 * 24 23 22 26 26 C 1.37686 * 125.06279 * 84.99866 * 15 14 12 27 27 C 1.53778 * 113.68739 * 247.53534 * 6 5 2 28 28 H 1.08995 * 109.47028 * 300.00405 * 1 2 3 29 29 H 1.09006 * 109.47006 * 60.00153 * 1 2 3 30 30 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47004 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47098 * 299.99790 * 3 2 1 33 33 H 1.08994 * 109.47043 * 60.00070 * 3 2 1 34 34 H 1.08998 * 109.46738 * 299.99903 * 4 2 1 35 35 H 1.08992 * 109.47184 * 59.99740 * 4 2 1 36 36 H 1.08998 * 109.46895 * 180.02562 * 4 2 1 37 37 H 1.09000 * 113.61478 * 334.65116 * 8 6 5 38 38 H 1.08994 * 113.60898 * 203.74760 * 8 6 5 39 39 H 0.96993 * 119.99894 * 335.00251 * 11 9 8 40 40 H 1.09007 * 109.46764 * 60.01275 * 14 12 11 41 41 H 1.08994 * 109.47932 * 300.00596 * 14 12 11 42 42 H 1.08007 * 125.03309 * 359.97380 * 16 15 14 43 43 H 1.08995 * 109.47792 * 225.79710 * 18 17 16 44 44 H 0.96703 * 113.99813 * 300.01125 * 19 18 17 45 45 H 1.48499 * 110.00227 * 58.67697 * 20 18 17 46 46 H 1.48503 * 109.99805 * 179.97438 * 20 18 17 47 47 H 1.07992 * 120.11854 * 359.97295 * 22 21 17 48 48 H 1.08001 * 119.73757 * 180.02562 * 23 22 21 49 49 H 1.07992 * 119.66635 * 179.97438 * 24 23 22 50 50 H 1.08002 * 120.10599 * 179.97438 * 25 24 23 51 51 H 1.08998 * 113.61437 * 156.32476 * 27 6 5 52 52 H 1.08997 * 113.62014 * 25.41813 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 1.2523 -2.4451 0.3106 8 6 2.5838 -2.9379 2.0079 9 6 1.8410 -2.5616 3.3008 10 1 2.2329 -1.6671 3.7849 11 7 1.6723 -3.6830 4.2282 12 6 1.5203 -3.4498 5.5470 13 8 1.5227 -2.3116 5.9657 14 6 1.3462 -4.6033 6.5009 15 7 1.2014 -4.0909 7.8657 16 6 2.2213 -3.9599 8.7685 17 6 1.7521 -3.4507 9.9186 18 6 2.5524 -3.1560 11.1610 19 8 2.7360 -1.7443 11.2856 20 14 4.2140 -3.9900 11.0417 21 6 0.3115 -3.2511 9.7422 22 6 -0.7097 -2.7734 10.5653 23 6 -1.9895 -2.7085 10.0902 24 6 -2.2824 -3.1143 8.7957 25 6 -1.2896 -3.5890 7.9664 26 6 0.0190 -3.6686 8.4308 27 6 0.6068 -2.2980 2.4219 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 3.6107 -2.5741 1.9726 38 1 2.4979 -3.9924 1.7462 39 1 1.6701 -4.5932 3.8933 40 1 2.2193 -5.2538 6.4475 41 1 0.4548 -5.1685 6.2290 42 1 3.2528 -4.2196 8.5807 43 1 2.0192 -3.5315 12.0344 44 1 3.2047 -1.3415 10.5419 45 1 4.9380 -3.5100 9.8372 46 1 5.0133 -3.7065 12.2608 47 1 -0.4893 -2.4563 11.5738 48 1 -2.7792 -2.3384 10.7272 49 1 -3.2986 -3.0573 8.4347 50 1 -1.5277 -3.9028 6.9608 51 1 -0.0193 -3.1777 2.2735 52 1 0.0378 -1.4178 2.7210 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12113340_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:55:17 Heat of formation + Delta-G solvation = -15.137963 kcal Electronic energy + Delta-G solvation = -32349.296556 eV Core-core repulsion = 28089.274453 eV Total energy + Delta-G solvation = -4260.022103 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -42.54880 -41.36514 -40.24201 -38.30790 -38.13618 -37.64719 -34.85145 -34.09249 -33.30056 -31.42416 -30.25288 -29.08267 -28.46036 -28.38887 -26.68099 -26.17764 -24.96304 -23.71403 -22.69836 -21.86436 -21.63301 -20.70514 -20.19115 -18.67748 -18.44553 -18.09030 -17.65625 -17.29660 -16.79437 -16.65097 -16.41658 -16.18352 -16.13358 -15.92773 -15.55594 -15.37423 -14.95166 -14.82599 -14.72693 -14.52100 -14.30929 -14.22690 -14.10656 -13.66789 -13.52049 -13.48501 -13.20539 -13.06535 -12.91639 -12.77168 -12.73887 -12.70537 -12.59013 -12.56513 -12.39454 -12.02455 -11.97200 -11.76097 -11.75126 -11.21542 -11.06596 -10.56361 -10.48142 -10.46780 -10.12115 -9.16923 -8.64291 -4.90530 0.13165 0.62991 1.33934 1.41466 1.43100 1.61200 1.70607 1.99104 2.22282 2.54442 2.93983 3.43798 3.49041 3.54623 3.60889 3.67394 3.72396 3.78488 3.84618 3.86605 3.93719 3.99997 4.03896 4.08360 4.15149 4.21184 4.24366 4.29491 4.49082 4.58019 4.60502 4.61531 4.65859 4.70985 4.71423 4.74225 4.78035 4.79330 4.86877 4.88267 4.88783 4.94204 5.00466 5.05971 5.12784 5.16477 5.29064 5.31412 5.45538 5.49891 5.65466 5.72943 5.74386 6.18189 6.22638 6.35578 6.47838 6.52467 7.14647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 C -0.142 4.142 4 C -0.175 4.175 5 O -0.380 6.380 6 C 0.061 3.939 7 H 0.102 0.898 8 C -0.132 4.132 9 C 0.125 3.875 10 H 0.076 0.924 11 N -0.699 5.699 12 C 0.488 3.512 13 O -0.578 6.578 14 C 0.089 3.911 15 N -0.466 5.466 16 C 0.074 3.926 17 C -0.216 4.216 18 C -0.057 4.057 19 O -0.556 6.556 20 Si 0.788 3.212 21 C -0.116 4.116 22 C -0.088 4.088 23 C -0.154 4.154 24 C -0.108 4.108 25 C -0.134 4.134 26 C 0.091 3.909 27 C -0.165 4.165 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.423 0.577 40 H 0.167 0.833 41 H 0.147 0.853 42 H 0.197 0.803 43 H 0.111 0.889 44 H 0.381 0.619 45 H -0.275 1.275 46 H -0.303 1.303 47 H 0.119 0.881 48 H 0.137 0.863 49 H 0.145 0.855 50 H 0.133 0.867 51 H 0.115 0.885 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -9.347 -8.633 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.062 3.938 3 C -0.199 4.199 4 C -0.232 4.232 5 O -0.300 6.300 6 C 0.003 3.997 7 H 0.119 0.881 8 C -0.170 4.170 9 C 0.020 3.980 10 H 0.094 0.906 11 N -0.352 5.352 12 C 0.274 3.726 13 O -0.457 6.457 14 C -0.036 4.036 15 N -0.148 5.148 16 C -0.052 4.052 17 C -0.223 4.223 18 C -0.165 4.165 19 O -0.363 6.363 20 Si 0.692 3.308 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.173 4.173 24 C -0.127 4.127 25 C -0.154 4.154 26 C -0.014 4.014 27 C -0.204 4.204 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.149 0.851 39 H 0.262 0.738 40 H 0.184 0.816 41 H 0.165 0.835 42 H 0.214 0.786 43 H 0.128 0.872 44 H 0.229 0.771 45 H -0.202 1.202 46 H -0.231 1.231 47 H 0.137 0.863 48 H 0.154 0.846 49 H 0.163 0.837 50 H 0.150 0.850 51 H 0.133 0.867 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.582 -8.574 -7.986 11.732 hybrid contribution -0.340 1.455 -0.401 1.547 sum 0.243 -7.119 -8.387 11.004 Atomic orbital electron populations 1.22445 0.94993 1.02926 1.02753 1.21697 0.93644 0.93188 0.85299 1.21813 1.01739 0.93517 1.02811 1.22430 1.01964 1.01353 0.97455 1.87974 1.73910 1.23934 1.44151 1.22896 0.95699 0.82892 0.98211 0.88078 1.23618 0.99218 1.01412 0.92718 1.22326 0.97414 0.90053 0.88228 0.90575 1.45807 1.72882 1.10959 1.05597 1.21620 0.75739 0.91081 0.84161 1.90805 1.51016 1.25577 1.78253 1.22021 1.09782 0.94058 0.77723 1.43435 1.05450 1.54828 1.11111 1.22020 0.93944 1.00872 0.88348 1.20717 0.92694 1.11261 0.97654 1.24740 1.09760 0.84983 0.97000 1.86550 1.79819 1.21289 1.48690 0.94198 0.71322 0.88546 0.76734 1.19353 0.94036 1.04378 0.94278 1.20456 0.92264 0.98598 0.99350 1.20922 0.96572 1.02892 0.96896 1.21134 0.99564 0.98318 0.93657 1.20248 0.89514 1.04896 1.00782 1.18408 0.88304 1.01543 0.93184 1.24002 0.97312 1.02616 0.96483 0.93161 0.90418 0.91537 0.92229 0.89491 0.92984 0.91199 0.90397 0.92125 0.90761 0.85092 0.73834 0.81596 0.83526 0.78647 0.87156 0.77079 1.20154 1.23123 0.86290 0.84553 0.83682 0.84963 0.86716 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.22 8.38 71.98 0.60 0.82 16 2 C 0.10 0.02 1.11 -10.79 -0.01 0.00 16 3 C -0.14 -0.08 8.84 71.98 0.64 0.56 16 4 C -0.17 0.57 8.38 71.98 0.60 1.17 16 5 O -0.38 -1.42 9.92 -148.98 -1.48 -2.90 16 6 C 0.06 -0.15 2.88 31.12 0.09 -0.06 16 7 H 0.10 -0.61 5.54 -2.39 -0.01 -0.62 16 8 C -0.13 0.70 7.66 31.12 0.24 0.94 16 9 C 0.13 -0.04 4.18 45.52 0.19 0.15 16 10 H 0.08 0.68 7.46 -2.39 -0.02 0.66 16 11 N -0.70 3.84 5.35 -440.04 -2.36 1.49 16 12 C 0.49 0.40 7.90 87.66 0.69 1.09 16 13 O -0.58 -8.06 16.02 -3.02 -0.05 -8.11 16 14 C 0.09 -0.58 6.48 85.63 0.55 -0.02 16 15 N -0.47 -1.22 2.27 -519.99 -1.18 -2.40 16 16 C 0.07 0.17 9.89 83.00 0.82 0.99 16 17 C -0.22 -1.45 5.58 -18.62 -0.10 -1.55 16 18 C -0.06 -0.28 3.06 71.24 0.22 -0.07 16 19 O -0.56 -5.37 12.88 -148.98 -1.92 -7.29 16 20 Si 0.79 -0.27 30.80 68.60 2.11 1.84 16 21 C -0.12 -1.26 6.35 -20.20 -0.13 -1.39 16 22 C -0.09 -0.92 10.05 22.23 0.22 -0.69 16 23 C -0.15 -1.14 9.97 22.03 0.22 -0.92 16 24 C -0.11 -0.61 10.01 22.30 0.22 -0.39 16 25 C -0.13 -0.82 10.00 22.37 0.22 -0.60 16 26 C 0.09 0.74 6.80 39.03 0.27 1.01 16 27 C -0.17 0.28 7.71 31.12 0.24 0.52 16 28 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 30 H 0.07 -0.19 7.02 -2.39 -0.02 -0.21 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 33 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.07 -0.37 6.24 -2.39 -0.01 -0.38 16 35 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.13 -1.59 8.12 -2.39 -0.02 -1.61 16 39 H 0.42 -6.05 8.73 -92.71 -0.81 -6.86 16 40 H 0.17 -2.52 8.12 -2.38 -0.02 -2.54 16 41 H 0.15 -1.78 8.14 -2.39 -0.02 -1.80 16 42 H 0.20 -0.87 6.27 -2.91 -0.02 -0.89 16 43 H 0.11 0.49 7.96 -2.39 -0.02 0.47 16 44 H 0.38 1.89 8.70 -74.06 -0.64 1.25 16 45 H -0.28 -0.54 7.01 99.48 0.70 0.15 16 46 H -0.30 -2.23 7.11 99.48 0.71 -1.53 16 47 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 0.44 8.06 -2.91 -0.02 0.41 16 49 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 50 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 51 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 52 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 Total: 0.00 -30.03 422.55 0.43 -29.60 By element: Atomic # 1 Polarization: -13.31 SS G_CDS: -0.50 Total: -13.81 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.80 Total: 1.57 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -3.54 Total: -0.91 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -3.45 Total: -18.29 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: 2.11 Total: 1.84 kcal Total: -30.03 0.43 -29.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12113340_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds