Wall clock time and date at job start Sat Mar 6 2021 16:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99688 * 2 1 4 4 O 1.20825 * 120.00128 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99854 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.84682 * 48.81138 * 5 3 2 7 7 C 1.53782 * 113.61319 * 180.02562 * 5 3 2 8 8 C 1.53775 * 87.07981 * 140.07030 * 7 5 3 9 9 H 1.09002 * 113.61294 * 219.93727 * 8 7 5 10 10 N 1.46501 * 113.61745 * 89.11451 * 8 7 5 11 11 C 1.34778 * 119.99750 * 155.00016 * 10 8 7 12 12 O 1.21281 * 120.00180 * 359.97438 * 11 10 8 13 13 C 1.50697 * 119.99748 * 180.02562 * 11 10 8 14 14 C 1.53007 * 109.47167 * 299.99757 * 13 11 10 15 15 O 1.42904 * 109.47262 * 180.02562 * 13 11 10 16 16 C 1.35900 * 117.00017 * 204.84264 * 15 13 11 17 17 C 1.38732 * 120.05276 * 354.62416 * 16 15 13 18 18 C 1.38152 * 119.93673 * 179.97438 * 17 16 15 19 19 C 1.38262 * 120.05875 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.94118 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47839 * 64.99895 * 20 19 18 22 22 Si 1.86302 * 109.46926 * 185.00170 * 20 19 18 23 23 C 1.38267 * 120.11167 * 0.02562 * 19 18 17 24 24 C 1.38145 * 120.05417 * 359.97438 * 23 19 18 25 25 C 1.53772 * 113.69308 * 277.54128 * 5 3 2 26 26 H 1.09000 * 109.47887 * 59.99697 * 1 2 3 27 27 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47197 * 299.99378 * 1 2 3 29 29 H 1.09001 * 113.61751 * 25.51519 * 7 5 3 30 30 H 1.09000 * 113.68904 * 254.62969 * 7 5 3 31 31 H 0.96997 * 120.00019 * 335.00187 * 10 8 7 32 32 H 1.08996 * 109.47420 * 59.99651 * 13 11 10 33 33 H 1.08991 * 109.47175 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46873 * 300.00671 * 14 13 11 35 35 H 1.09001 * 109.46643 * 60.00069 * 14 13 11 36 36 H 1.07993 * 120.02910 * 359.95158 * 17 16 15 37 37 H 1.08000 * 119.96803 * 179.72490 * 18 17 16 38 38 H 1.09001 * 109.47011 * 304.99279 * 20 19 18 39 39 H 0.96702 * 113.99839 * 59.99549 * 21 20 19 40 40 H 1.48494 * 110.00275 * 58.67765 * 22 20 19 41 41 H 1.48504 * 110.00330 * 179.97438 * 22 20 19 42 42 H 1.07994 * 119.97105 * 180.02562 * 23 19 18 43 43 H 1.07995 * 120.02270 * 180.02562 * 24 23 19 44 44 H 1.08993 * 113.61665 * 105.45533 * 25 5 3 45 45 H 1.09005 * 113.61384 * 334.55420 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6364 -0.7550 7 6 4.1077 2.7143 0.0011 8 6 5.1820 2.2261 0.9871 9 1 5.3989 2.9376 1.7840 10 7 6.3907 1.7177 0.3338 11 6 7.5677 1.7304 0.9904 12 8 7.6263 2.1632 2.1218 13 6 8.8111 1.2080 0.3181 14 6 8.6107 -0.2628 -0.0528 15 8 9.9208 1.3266 1.2107 16 6 11.1567 1.4065 0.6512 17 6 11.3096 1.2597 -0.7198 18 6 12.5670 1.3419 -1.2861 19 6 13.6724 1.5707 -0.4878 20 6 15.0429 1.6593 -1.1082 21 8 15.1053 2.8014 -1.9646 22 14 16.3235 1.8198 0.2353 23 6 13.5227 1.7174 0.8789 24 6 12.2675 1.6361 1.4500 25 6 4.1925 1.1230 1.3968 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.4176 3.4402 0.4312 30 1 4.5098 3.0313 -0.9611 31 1 6.3439 1.3720 -0.5712 32 1 9.0068 1.7869 -0.5844 33 1 9.5101 -0.6408 -0.5386 34 1 8.4149 -0.8417 0.8498 35 1 7.7641 -0.3537 -0.7334 36 1 10.4464 1.0810 -1.3438 37 1 12.6871 1.2232 -2.3528 38 1 15.2374 0.7581 -1.6896 39 1 14.9416 3.6409 -1.5133 40 1 16.2477 0.6535 1.1513 41 1 17.6797 1.9074 -0.3634 42 1 14.3876 1.8965 1.5003 43 1 12.1510 1.7511 2.5175 44 1 4.6630 0.1537 1.5612 45 1 3.5256 1.4140 2.2085 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_10157680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:11 Heat of formation + Delta-G solvation = -125.207524 kcal Electronic energy + Delta-G solvation = -28274.262700 eV Core-core repulsion = 24032.368147 eV Total energy + Delta-G solvation = -4241.894553 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17914 -41.66875 -40.76523 -39.57352 -38.73681 -37.37758 -37.15112 -34.83404 -33.06615 -32.07929 -31.41389 -29.47097 -27.27910 -27.01434 -26.68153 -25.48046 -24.19263 -22.81380 -22.38019 -21.60229 -20.56662 -19.53556 -19.06401 -18.45538 -18.19164 -17.87419 -17.43139 -17.17929 -16.87922 -16.75229 -16.41980 -15.99666 -15.83693 -15.70216 -15.41520 -15.08114 -14.90835 -14.73291 -14.42320 -14.29708 -14.19685 -13.95019 -13.70467 -13.58427 -13.53967 -13.33677 -13.22599 -13.00347 -12.92387 -12.21410 -12.13728 -12.06754 -12.00513 -11.90287 -11.82907 -11.69765 -11.38393 -10.91029 -10.42576 -10.31981 -10.07413 -9.22778 -5.03294 0.21835 0.31832 1.09802 1.29822 1.32675 1.40483 1.63878 1.65538 1.97932 2.35605 2.63218 3.06768 3.15300 3.27915 3.46422 3.48650 3.51621 3.61808 3.65989 3.69511 3.80804 3.83073 3.89009 4.11990 4.15864 4.19921 4.22192 4.31225 4.35533 4.40449 4.46926 4.53327 4.54894 4.57123 4.58387 4.62448 4.70006 4.80658 4.84406 4.95764 5.15517 5.26551 5.29722 5.33860 5.45580 5.62632 6.14026 6.31202 6.57172 6.67837 6.98014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.503 6.503 5 C -0.113 4.113 6 H 0.125 0.875 7 C -0.124 4.124 8 C 0.123 3.877 9 H 0.116 0.884 10 N -0.711 5.711 11 C 0.523 3.477 12 O -0.506 6.506 13 C 0.067 3.933 14 C -0.179 4.179 15 O -0.283 6.283 16 C 0.135 3.865 17 C -0.212 4.212 18 C -0.051 4.051 19 C -0.158 4.158 20 C -0.063 4.063 21 O -0.542 6.542 22 Si 0.684 3.316 23 C -0.074 4.074 24 C -0.141 4.141 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.403 0.597 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.379 0.621 40 H -0.257 1.257 41 H -0.255 1.255 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -1.454 -2.627 3.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.390 6.390 5 C -0.132 4.132 6 H 0.143 0.857 7 C -0.162 4.162 8 C 0.018 3.982 9 H 0.134 0.866 10 N -0.365 5.365 11 C 0.307 3.693 12 O -0.379 6.379 13 C 0.007 3.993 14 C -0.236 4.236 15 O -0.196 6.196 16 C 0.090 3.910 17 C -0.230 4.230 18 C -0.069 4.069 19 C -0.158 4.158 20 C -0.174 4.174 21 O -0.347 6.347 22 Si 0.586 3.414 23 C -0.091 4.091 24 C -0.160 4.160 25 C -0.170 4.170 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.238 0.762 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.226 0.774 40 H -0.182 1.182 41 H -0.180 1.180 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.107 0.893 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.754 -1.652 -1.631 2.441 hybrid contribution -0.846 -0.694 -1.171 1.603 sum -1.600 -2.347 -2.802 3.990 Atomic orbital electron populations 1.23331 0.75884 1.04041 1.02754 1.86516 1.23784 1.33336 1.83787 1.23546 0.91652 0.81454 0.72165 1.90693 1.66955 1.36423 1.44947 1.22656 0.87739 1.01008 1.01806 0.85714 1.23370 0.96909 0.94866 1.01048 1.21807 0.83226 0.96487 0.96714 0.86571 1.45533 1.07110 1.65236 1.18604 1.20094 0.83962 0.78588 0.86609 1.90789 1.85343 1.44074 1.17697 1.22178 0.85239 0.98647 0.93268 1.22378 1.03988 0.93715 1.03527 1.86220 1.11700 1.87638 1.34000 1.19068 0.84707 0.95519 0.91738 1.21322 0.98994 1.08952 0.93766 1.20796 0.90929 0.95201 0.99949 1.20245 0.96340 1.05496 0.93749 1.24960 0.99070 0.91567 1.01766 1.86497 1.94189 1.16234 1.37787 0.94782 0.77922 0.89149 0.79575 1.20818 0.96483 0.97905 0.93937 1.20416 0.89921 1.05021 1.00638 1.23396 0.97782 1.01190 0.94664 0.91722 0.87833 0.91700 0.86770 0.89472 0.76208 0.87971 0.90223 0.90345 0.90182 0.85090 0.85321 0.87073 0.77361 1.18197 1.17983 0.84883 0.84421 0.89327 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.25 10.57 -39.24 -0.41 -0.67 16 3 C 0.47 0.41 7.49 36.01 0.27 0.68 16 4 O -0.50 -1.92 15.65 -18.75 -0.29 -2.21 16 5 C -0.11 0.27 4.13 -90.96 -0.38 -0.10 16 6 H 0.12 -0.58 8.14 -51.93 -0.42 -1.00 16 7 C -0.12 0.32 7.15 -25.92 -0.19 0.14 16 8 C 0.12 -0.24 4.32 -67.14 -0.29 -0.53 16 9 H 0.12 -0.02 7.46 -51.93 -0.39 -0.41 16 10 N -0.71 1.99 5.16 -53.04 -0.27 1.72 16 11 C 0.52 0.27 7.23 -10.99 -0.08 0.19 16 12 O -0.51 -2.73 16.10 -14.35 -0.23 -2.96 16 13 C 0.07 -0.08 2.65 -27.88 -0.07 -0.15 16 14 C -0.18 0.58 9.07 37.16 0.34 0.92 16 15 O -0.28 -0.62 9.33 -39.34 -0.37 -0.98 16 16 C 0.14 0.17 6.60 -39.22 -0.26 -0.09 16 17 C -0.21 0.07 8.24 -39.43 -0.32 -0.25 16 18 C -0.05 0.00 9.68 -39.60 -0.38 -0.38 16 19 C -0.16 0.01 5.35 -104.60 -0.56 -0.55 16 20 C -0.06 0.02 2.80 36.00 0.10 0.12 16 21 O -0.54 -0.05 12.83 -35.23 -0.45 -0.50 16 22 Si 0.68 -0.69 29.80 -169.99 -5.07 -5.76 16 23 C -0.07 0.02 8.66 -39.61 -0.34 -0.32 16 24 C -0.14 -0.12 9.99 -39.44 -0.39 -0.52 16 25 C -0.13 0.29 7.43 -25.94 -0.19 0.10 16 26 H 0.06 -0.06 8.13 -51.93 -0.42 -0.49 16 27 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 28 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 29 H 0.11 -0.14 7.44 -51.93 -0.39 -0.53 16 30 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 31 H 0.40 -2.38 8.12 -40.82 -0.33 -2.71 16 32 H 0.10 -0.34 6.32 -51.93 -0.33 -0.67 16 33 H 0.08 -0.26 6.90 -51.93 -0.36 -0.62 16 34 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 35 H 0.08 -0.47 7.56 -51.93 -0.39 -0.86 16 36 H 0.13 -0.35 5.43 -52.49 -0.28 -0.63 16 37 H 0.13 -0.11 8.06 -52.49 -0.42 -0.54 16 38 H 0.11 0.00 7.96 -51.93 -0.41 -0.42 16 39 H 0.38 -1.38 8.70 45.56 0.40 -0.98 16 40 H -0.26 -0.36 7.11 56.52 0.40 0.05 16 41 H -0.25 -0.58 7.11 56.52 0.40 -0.18 16 42 H 0.13 -0.31 4.90 -52.49 -0.26 -0.57 16 43 H 0.14 0.02 8.06 -52.49 -0.42 -0.40 16 44 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 45 H 0.10 -0.18 8.10 -51.93 -0.42 -0.60 16 LS Contribution 376.96 15.07 5.68 5.68 Total: 0.00 -10.90 376.96 -9.27 -20.17 By element: Atomic # 1 Polarization: -8.61 SS G_CDS: -6.17 Total: -14.77 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.69 Total: 0.28 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: -0.27 Total: 1.72 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -1.76 Total: -7.33 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.07 Total: -5.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -10.90 -9.27 -20.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_10157680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.034 kcal (2) G-P(sol) polarization free energy of solvation -10.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds