Wall clock time and date at job start Sat Mar 6 2021 16:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99688 * 2 1 4 4 O 1.20825 * 120.00128 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99854 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.84682 * 48.81138 * 5 3 2 7 7 C 1.53782 * 113.61319 * 180.02562 * 5 3 2 8 8 C 1.53775 * 87.07981 * 140.07030 * 7 5 3 9 9 H 1.09002 * 113.61294 * 219.93727 * 8 7 5 10 10 N 1.46501 * 113.61745 * 89.11451 * 8 7 5 11 11 C 1.34778 * 119.99750 * 155.00016 * 10 8 7 12 12 O 1.21281 * 120.00180 * 359.97438 * 11 10 8 13 13 C 1.50697 * 119.99748 * 180.02562 * 11 10 8 14 14 C 1.53007 * 109.47167 * 299.99757 * 13 11 10 15 15 O 1.42904 * 109.47262 * 180.02562 * 13 11 10 16 16 C 1.35900 * 117.00017 * 204.84264 * 15 13 11 17 17 C 1.38732 * 120.05276 * 354.62416 * 16 15 13 18 18 C 1.38152 * 119.93673 * 179.97438 * 17 16 15 19 19 C 1.38262 * 120.05875 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.94118 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47839 * 64.99895 * 20 19 18 22 22 Si 1.86302 * 109.46926 * 185.00170 * 20 19 18 23 23 C 1.38267 * 120.11167 * 0.02562 * 19 18 17 24 24 C 1.38145 * 120.05417 * 359.97438 * 23 19 18 25 25 C 1.53772 * 113.69308 * 277.54128 * 5 3 2 26 26 H 1.09000 * 109.47887 * 59.99697 * 1 2 3 27 27 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47197 * 299.99378 * 1 2 3 29 29 H 1.09001 * 113.61751 * 25.51519 * 7 5 3 30 30 H 1.09000 * 113.68904 * 254.62969 * 7 5 3 31 31 H 0.96997 * 120.00019 * 335.00187 * 10 8 7 32 32 H 1.08996 * 109.47420 * 59.99651 * 13 11 10 33 33 H 1.08991 * 109.47175 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46873 * 300.00671 * 14 13 11 35 35 H 1.09001 * 109.46643 * 60.00069 * 14 13 11 36 36 H 1.07993 * 120.02910 * 359.95158 * 17 16 15 37 37 H 1.08000 * 119.96803 * 179.72490 * 18 17 16 38 38 H 1.09001 * 109.47011 * 304.99279 * 20 19 18 39 39 H 0.96702 * 113.99839 * 59.99549 * 21 20 19 40 40 H 1.48494 * 110.00275 * 58.67765 * 22 20 19 41 41 H 1.48504 * 110.00330 * 179.97438 * 22 20 19 42 42 H 1.07994 * 119.97105 * 180.02562 * 23 19 18 43 43 H 1.07995 * 120.02270 * 180.02562 * 24 23 19 44 44 H 1.08993 * 113.61665 * 105.45533 * 25 5 3 45 45 H 1.09005 * 113.61384 * 334.55420 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6364 -0.7550 7 6 4.1077 2.7143 0.0011 8 6 5.1820 2.2261 0.9871 9 1 5.3989 2.9376 1.7840 10 7 6.3907 1.7177 0.3338 11 6 7.5677 1.7304 0.9904 12 8 7.6263 2.1632 2.1218 13 6 8.8111 1.2080 0.3181 14 6 8.6107 -0.2628 -0.0528 15 8 9.9208 1.3266 1.2107 16 6 11.1567 1.4065 0.6512 17 6 11.3096 1.2597 -0.7198 18 6 12.5670 1.3419 -1.2861 19 6 13.6724 1.5707 -0.4878 20 6 15.0429 1.6593 -1.1082 21 8 15.1053 2.8014 -1.9646 22 14 16.3235 1.8198 0.2353 23 6 13.5227 1.7174 0.8789 24 6 12.2675 1.6361 1.4500 25 6 4.1925 1.1230 1.3968 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 3.4176 3.4402 0.4312 30 1 4.5098 3.0313 -0.9611 31 1 6.3439 1.3720 -0.5712 32 1 9.0068 1.7869 -0.5844 33 1 9.5101 -0.6408 -0.5386 34 1 8.4149 -0.8417 0.8498 35 1 7.7641 -0.3537 -0.7334 36 1 10.4464 1.0810 -1.3438 37 1 12.6871 1.2232 -2.3528 38 1 15.2374 0.7581 -1.6896 39 1 14.9416 3.6409 -1.5133 40 1 16.2477 0.6535 1.1513 41 1 17.6797 1.9074 -0.3634 42 1 14.3876 1.8965 1.5003 43 1 12.1510 1.7511 2.5175 44 1 4.6630 0.1537 1.5612 45 1 3.5256 1.4140 2.2085 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_10157680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:10 Heat of formation + Delta-G solvation = -126.022263 kcal Electronic energy + Delta-G solvation = -28274.298030 eV Core-core repulsion = 24032.368147 eV Total energy + Delta-G solvation = -4241.929883 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.14850 -41.65829 -40.76401 -39.52089 -38.74771 -37.46000 -37.12401 -34.81911 -32.93842 -32.02688 -31.35369 -29.40528 -27.16727 -26.85188 -26.61885 -25.36801 -24.14318 -22.78505 -22.35745 -21.53931 -20.48468 -19.47375 -19.03646 -18.43441 -18.14598 -17.87661 -17.45240 -17.14891 -16.81900 -16.65908 -16.38809 -15.95020 -15.76745 -15.66960 -15.35178 -15.06047 -14.82891 -14.71490 -14.32220 -14.27765 -14.22784 -13.86115 -13.61333 -13.46653 -13.34529 -13.27774 -13.14649 -12.88826 -12.87145 -12.16720 -12.13528 -12.04393 -11.88527 -11.83950 -11.77002 -11.67884 -11.40030 -10.95833 -10.39653 -10.24980 -10.02880 -9.21222 -4.98738 0.26103 0.33816 1.05934 1.34179 1.36572 1.46236 1.64574 1.72611 1.97385 2.46054 2.66633 3.21206 3.30798 3.41430 3.58386 3.64712 3.68004 3.74891 3.75912 3.84569 3.88303 3.94858 4.05773 4.25375 4.27784 4.28388 4.36754 4.47144 4.53464 4.58367 4.62254 4.64537 4.67864 4.69927 4.70813 4.78855 4.88062 4.97462 5.00764 5.12132 5.20353 5.30111 5.34308 5.41930 5.49923 5.69003 6.25695 6.43085 6.64689 6.79844 7.07085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.104 4.104 6 H 0.157 0.843 7 C -0.117 4.117 8 C 0.123 3.877 9 H 0.094 0.906 10 N -0.689 5.689 11 C 0.522 3.478 12 O -0.565 6.565 13 C 0.064 3.936 14 C -0.174 4.174 15 O -0.312 6.312 16 C 0.121 3.879 17 C -0.207 4.207 18 C -0.058 4.058 19 C -0.162 4.162 20 C -0.063 4.063 21 O -0.556 6.556 22 Si 0.764 3.236 23 C -0.076 4.076 24 C -0.160 4.160 25 C -0.129 4.129 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.422 0.578 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.395 0.605 40 H -0.288 1.288 41 H -0.300 1.300 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.094 0.906 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -2.157 -4.447 5.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.122 4.122 6 H 0.175 0.825 7 C -0.155 4.155 8 C 0.017 3.983 9 H 0.112 0.888 10 N -0.344 5.344 11 C 0.308 3.692 12 O -0.442 6.442 13 C 0.005 3.995 14 C -0.231 4.231 15 O -0.225 6.225 16 C 0.076 3.924 17 C -0.226 4.226 18 C -0.076 4.076 19 C -0.163 4.163 20 C -0.174 4.174 21 O -0.364 6.364 22 Si 0.671 3.329 23 C -0.093 4.093 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.261 0.739 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.125 0.875 39 H 0.245 0.755 40 H -0.215 1.215 41 H -0.228 1.228 42 H 0.166 0.834 43 H 0.153 0.847 44 H 0.113 0.887 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.944 -2.363 -3.497 4.325 hybrid contribution -0.826 -0.493 -0.608 1.138 sum -1.770 -2.856 -4.105 5.305 Atomic orbital electron populations 1.23516 0.75184 1.05565 1.02391 1.86519 1.24651 1.33276 1.83486 1.24182 0.92803 0.80951 0.70934 1.90679 1.67986 1.37494 1.46721 1.22806 0.85600 1.01549 1.02291 0.82518 1.23288 0.96037 0.94616 1.01524 1.21699 0.83549 0.96400 0.96656 0.88824 1.45344 1.05913 1.63980 1.19136 1.20515 0.85106 0.77649 0.85968 1.90767 1.86250 1.46922 1.20294 1.22421 0.83533 1.00331 0.93239 1.22399 1.05563 0.91690 1.03478 1.86186 1.12606 1.87938 1.35777 1.19251 0.84512 0.96160 0.92526 1.21529 0.99776 1.07998 0.93266 1.20997 0.91028 0.95071 1.00485 1.20332 0.96565 1.05539 0.93848 1.24992 0.99115 0.91538 1.01747 1.86459 1.94217 1.17161 1.38555 0.93826 0.74629 0.87132 0.77284 1.20967 0.96617 0.97555 0.94156 1.20596 0.90603 1.05766 1.00866 1.23357 0.97447 1.01232 0.94745 0.91957 0.85410 0.92258 0.88401 0.87539 0.73894 0.85450 0.89835 0.91982 0.86859 0.82688 0.84379 0.87464 0.75538 1.21550 1.22819 0.83373 0.84653 0.88725 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.38 10.57 -51.36 -0.54 -0.92 16 3 C 0.47 0.78 7.49 71.24 0.53 1.31 16 4 O -0.54 -4.55 15.65 21.97 0.34 -4.21 16 5 C -0.10 0.62 4.13 -11.01 -0.05 0.57 16 6 H 0.16 -1.94 8.14 -2.39 -0.02 -1.96 16 7 C -0.12 0.66 7.15 31.12 0.22 0.89 16 8 C 0.12 -0.47 4.32 45.50 0.20 -0.28 16 9 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 10 N -0.69 4.59 5.16 -440.09 -2.27 2.32 16 11 C 0.52 0.60 7.23 87.66 0.63 1.23 16 12 O -0.57 -7.11 16.10 16.00 0.26 -6.86 16 13 C 0.06 -0.20 2.65 29.85 0.08 -0.12 16 14 C -0.17 1.42 9.07 71.98 0.65 2.07 16 15 O -0.31 -1.56 9.33 -73.39 -0.68 -2.24 16 16 C 0.12 0.32 6.60 22.50 0.15 0.47 16 17 C -0.21 0.37 8.24 22.37 0.18 0.55 16 18 C -0.06 0.06 9.68 22.25 0.22 0.28 16 19 C -0.16 0.08 5.35 -19.85 -0.11 -0.03 16 20 C -0.06 0.07 2.80 71.23 0.20 0.27 16 21 O -0.56 0.29 12.83 -148.98 -1.91 -1.62 16 22 Si 0.76 -1.39 29.80 68.60 2.04 0.66 16 23 C -0.08 0.04 8.66 22.25 0.19 0.23 16 24 C -0.16 -0.40 9.99 22.36 0.22 -0.18 16 25 C -0.13 0.58 7.43 31.11 0.23 0.81 16 26 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 27 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 29 H 0.10 -0.16 7.44 -2.39 -0.02 -0.18 16 30 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.42 -6.15 8.12 -92.71 -0.75 -6.90 16 32 H 0.13 -1.11 6.32 -2.39 -0.02 -1.12 16 33 H 0.08 -0.70 6.90 -2.39 -0.02 -0.71 16 34 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.11 -1.72 7.56 -2.39 -0.02 -1.73 16 36 H 0.16 -1.19 5.43 -2.91 -0.02 -1.20 16 37 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 38 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 39 H 0.39 -3.23 8.70 -74.06 -0.64 -3.87 16 40 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 41 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 42 H 0.15 -0.70 4.90 -2.91 -0.01 -0.71 16 43 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.09 -0.22 8.10 -2.38 -0.02 -0.24 16 Total: 0.00 -28.42 376.96 1.68 -26.74 By element: Atomic # 1 Polarization: -22.79 SS G_CDS: -0.32 Total: -23.11 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 4.76 Total: 9.22 kcal Atomic # 7 Polarization: 4.59 SS G_CDS: -2.27 Total: 2.32 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -2.54 Total: -15.85 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.04 Total: 0.66 kcal Total: -28.42 1.68 -26.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_10157680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.277 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds