Wall clock time and date at job start Sat Mar 6 2021 16:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99819 * 2 1 4 4 O 1.20829 * 120.00310 * 359.97438 * 3 2 1 5 5 C 1.50710 * 119.99902 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.84604 * 311.19714 * 5 3 2 7 7 C 1.53775 * 113.68852 * 82.46512 * 5 3 2 8 8 C 1.53775 * 87.08097 * 139.99181 * 7 5 3 9 9 H 1.08996 * 113.69638 * 220.00692 * 8 7 5 10 10 N 1.46506 * 113.61531 * 89.11408 * 8 7 5 11 11 C 1.34775 * 119.99693 * 107.50126 * 10 8 7 12 12 O 1.21693 * 120.00197 * 0.02562 * 11 10 8 13 13 C 1.46676 * 119.99760 * 180.02562 * 11 10 8 14 14 C 1.37872 * 126.23378 * 179.71381 * 13 11 10 15 15 C 1.39839 * 107.08609 * 179.85013 * 14 13 11 16 16 C 1.50698 * 126.06805 * 180.16085 * 15 14 13 17 17 O 1.42896 * 109.47317 * 300.32746 * 16 15 14 18 18 Si 1.86302 * 109.47174 * 180.32847 * 16 15 14 19 19 C 1.35455 * 107.86555 * 0.41732 * 15 14 13 20 20 N 1.35539 * 108.87035 * 359.74447 * 19 15 14 21 21 C 1.53777 * 113.61300 * 180.02562 * 5 3 2 22 22 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47325 * 300.00299 * 1 2 3 24 24 H 1.09008 * 109.47168 * 60.00265 * 1 2 3 25 25 H 1.09003 * 113.61490 * 25.44628 * 7 5 3 26 26 H 1.09002 * 113.61432 * 254.54438 * 7 5 3 27 27 H 0.97000 * 120.00117 * 287.50478 * 10 8 7 28 28 H 1.08002 * 126.46094 * 0.02562 * 14 13 11 29 29 H 1.09007 * 109.47357 * 60.33230 * 16 15 14 30 30 H 0.96703 * 114.00220 * 179.97438 * 17 16 15 31 31 H 1.48507 * 109.99677 * 60.00100 * 18 16 15 32 32 H 1.48493 * 110.00285 * 181.31777 * 18 16 15 33 33 H 1.07996 * 125.56833 * 179.72034 * 19 15 14 34 34 H 0.96998 * 125.67762 * 179.97438 * 20 19 15 35 35 H 1.09003 * 113.61538 * 105.38916 * 21 5 3 36 36 H 1.09005 * 113.61509 * 334.48527 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 4.0233 0.6365 0.7567 7 6 4.1935 1.1226 -1.3952 8 6 5.1827 2.2262 -0.9848 9 1 5.4003 2.9377 -1.7813 10 7 6.3910 1.7177 -0.3306 11 6 7.5684 1.7305 -0.9864 12 8 7.6280 2.1647 -2.1216 13 6 8.7779 1.2209 -0.3316 14 6 10.0413 1.1679 -0.8812 15 6 10.8875 0.6173 0.0865 16 6 12.3662 0.3695 -0.0654 17 8 12.5897 -0.5235 -1.1584 18 14 13.0332 -0.3871 1.5009 19 6 10.1410 0.3409 1.1825 20 7 8.8574 0.7029 0.9413 21 6 4.1077 2.7143 0.0011 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 3.5273 1.4134 -2.2074 26 1 4.6642 0.1531 -1.5589 27 1 6.3435 1.3719 0.5744 28 1 10.3247 1.4932 -1.8713 29 1 12.8750 1.3140 -0.2580 30 1 13.5218 -0.7279 -1.3151 31 1 12.3474 -1.6757 1.7746 32 1 14.4964 -0.6071 1.3757 33 1 10.5086 -0.0969 2.0988 34 1 8.1177 0.6118 1.5622 35 1 4.5091 3.0294 0.9643 36 1 3.4179 3.4404 -0.4292 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_10543058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:13 Heat of formation + Delta-G solvation = -75.523192 kcal Electronic energy + Delta-G solvation = -21354.917849 eV Core-core repulsion = 17807.735430 eV Total energy + Delta-G solvation = -3547.182419 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50896 -41.95883 -40.63078 -39.05794 -37.75273 -37.47422 -34.60997 -32.60333 -30.79187 -29.41603 -27.27835 -26.88123 -26.27064 -24.29627 -22.52050 -21.32963 -20.70783 -20.55117 -19.63400 -18.84151 -18.42816 -17.95714 -17.47199 -17.08627 -16.94203 -16.36480 -15.91563 -15.48584 -15.12439 -15.05051 -14.77298 -14.74373 -14.39657 -14.26831 -13.95378 -13.73184 -13.49333 -13.33882 -13.16872 -12.88770 -12.53978 -11.95540 -11.90397 -11.86399 -11.79916 -11.42221 -11.35466 -10.42387 -10.33158 -9.87783 -9.26580 -4.84010 0.35850 1.04087 1.37076 1.58356 1.69831 1.71403 1.86498 2.07307 2.13708 2.23910 3.18769 3.28367 3.54444 3.62143 3.72711 3.80878 4.02281 4.10191 4.19247 4.23895 4.26606 4.30620 4.44903 4.59516 4.62889 4.66780 4.70982 4.75339 4.84792 4.90581 4.95479 5.04574 5.32294 5.38964 5.59977 5.74723 6.33655 6.54241 6.62763 6.70679 7.03581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.468 3.532 4 O -0.538 6.538 5 C -0.104 4.104 6 H 0.155 0.845 7 C -0.130 4.130 8 C 0.122 3.878 9 H 0.097 0.903 10 N -0.696 5.696 11 C 0.595 3.405 12 O -0.572 6.572 13 C -0.069 4.069 14 C -0.105 4.105 15 C -0.192 4.192 16 C -0.064 4.064 17 O -0.565 6.565 18 Si 0.788 3.212 19 C 0.060 3.940 20 N -0.513 5.513 21 C -0.115 4.115 22 H 0.127 0.873 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.415 0.585 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.391 0.609 31 H -0.287 1.287 32 H -0.298 1.298 33 H 0.215 0.785 34 H 0.439 0.561 35 H 0.106 0.894 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -2.124 8.627 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.312 3.688 4 O -0.427 6.427 5 C -0.123 4.123 6 H 0.172 0.828 7 C -0.169 4.169 8 C 0.017 3.983 9 H 0.115 0.885 10 N -0.347 5.347 11 C 0.384 3.616 12 O -0.451 6.451 13 C -0.182 4.182 14 C -0.132 4.132 15 C -0.198 4.198 16 C -0.172 4.172 17 O -0.374 6.374 18 Si 0.692 3.308 19 C -0.078 4.078 20 N -0.111 5.111 21 C -0.153 4.153 22 H 0.146 0.854 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.252 0.748 28 H 0.142 0.858 29 H 0.096 0.904 30 H 0.240 0.760 31 H -0.214 1.214 32 H -0.226 1.226 33 H 0.231 0.769 34 H 0.281 0.719 35 H 0.124 0.876 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.227 -2.155 8.221 8.501 hybrid contribution -0.079 -0.456 -0.973 1.078 sum -0.306 -2.611 7.247 7.709 Atomic orbital electron populations 1.23519 0.75136 1.05555 1.02435 1.86521 1.24696 1.33259 1.83484 1.24135 0.92710 0.80974 0.70969 1.90679 1.67944 1.37444 1.46675 1.22791 0.85724 1.01581 1.02162 0.82782 1.23372 0.97518 1.01105 0.94898 1.21738 0.83447 0.96395 0.96747 0.88507 1.45314 1.06440 1.64270 1.18702 1.17179 0.82358 0.77223 0.84859 1.90859 1.85992 1.48609 1.19616 1.20036 0.95074 1.14435 0.88620 1.21231 0.91421 1.01083 0.99461 1.18979 0.95158 1.09851 0.95788 1.24539 0.95332 0.97106 1.00184 1.86570 1.32144 1.67367 1.51355 0.94363 0.75855 0.81176 0.79454 1.22281 0.82830 1.01842 1.00831 1.41795 1.10249 1.46984 1.12064 1.23296 0.95972 0.94555 1.01470 0.85449 0.91877 0.92238 0.88844 0.89121 0.74805 0.85792 0.90362 0.75968 1.21359 1.22579 0.76913 0.71896 0.87551 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.58 10.57 -51.44 -0.54 -1.13 16 3 C 0.47 1.05 7.49 71.24 0.53 1.58 16 4 O -0.54 -4.73 15.65 21.95 0.34 -4.39 16 5 C -0.10 0.52 4.13 -11.01 -0.05 0.47 16 6 H 0.15 -1.73 8.14 -2.39 -0.02 -1.75 16 7 C -0.13 0.40 7.43 31.12 0.23 0.63 16 8 C 0.12 -0.29 4.33 45.53 0.20 -0.09 16 9 H 0.10 0.24 7.46 -2.39 -0.02 0.23 16 10 N -0.70 2.89 5.26 -443.94 -2.33 0.56 16 11 C 0.59 2.77 7.79 86.45 0.67 3.44 16 12 O -0.57 -8.38 16.48 -4.32 -0.07 -8.45 16 13 C -0.07 -0.16 7.06 40.35 0.28 0.12 16 14 C -0.10 -0.74 10.59 22.57 0.24 -0.50 16 15 C -0.19 -0.35 5.47 -20.12 -0.11 -0.46 16 16 C -0.06 0.00 3.01 71.24 0.21 0.21 16 17 O -0.56 -2.50 12.86 -148.98 -1.92 -4.41 16 18 Si 0.79 -3.80 30.59 68.60 2.10 -1.70 16 19 C 0.06 -0.33 10.45 83.48 0.87 0.54 16 20 N -0.51 3.50 5.99 -183.61 -1.10 2.40 16 21 C -0.11 0.56 7.15 31.13 0.22 0.79 16 22 H 0.13 -0.90 8.14 -2.39 -0.02 -0.92 16 23 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 24 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 25 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 26 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.41 -5.03 7.83 -92.71 -0.73 -5.76 16 28 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.08 -0.15 7.96 -2.38 -0.02 -0.17 16 30 H 0.39 -1.45 8.74 -74.06 -0.65 -2.09 16 31 H -0.29 -0.16 7.11 99.48 0.71 0.55 16 32 H -0.30 -0.31 7.11 99.48 0.71 0.40 16 33 H 0.21 -2.85 6.19 -2.91 -0.02 -2.87 16 34 H 0.44 -6.82 8.19 -92.71 -0.76 -7.58 16 35 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H 0.10 -0.12 7.44 -2.38 -0.02 -0.14 16 Total: 0.00 -29.61 315.85 0.04 -29.57 By element: Atomic # 1 Polarization: -19.39 SS G_CDS: -0.95 Total: -20.34 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 4.51 Total: 7.88 kcal Atomic # 7 Polarization: 6.39 SS G_CDS: -3.43 Total: 2.96 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -2.19 Total: -18.37 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.10 Total: -1.70 kcal Total: -29.61 0.04 -29.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_10543058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.949 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds