Wall clock time and date at job start Sat Mar 6 2021 16:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00054 * 2 1 4 4 O 1.20829 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00150 * 179.97438 * 3 2 1 6 6 H 1.08995 * 112.84989 * 311.19236 * 5 3 2 7 7 C 1.53780 * 113.61284 * 82.50301 * 5 3 2 8 8 C 1.53779 * 87.08150 * 139.98221 * 7 5 3 9 9 H 1.09007 * 113.69151 * 220.00480 * 8 7 5 10 10 N 1.46496 * 113.61687 * 89.11353 * 8 7 5 11 11 C 1.34781 * 120.00145 * 107.50349 * 10 8 7 12 12 O 1.21693 * 119.99800 * 5.08198 * 11 10 8 13 13 C 1.46672 * 120.00121 * 185.08666 * 11 10 8 14 14 C 1.37875 * 126.23534 * 5.50976 * 13 11 10 15 15 C 1.39837 * 107.08775 * 179.73043 * 14 13 11 16 16 C 1.35460 * 107.86195 * 0.41173 * 15 14 13 17 17 C 1.50699 * 125.55940 * 179.84670 * 16 15 14 18 18 O 1.42898 * 109.46741 * 149.69434 * 17 16 15 19 19 Si 1.86296 * 109.47325 * 29.69559 * 17 16 15 20 20 N 1.35533 * 108.86962 * 359.58229 * 16 15 14 21 21 C 1.46501 * 125.67372 * 180.24128 * 20 16 15 22 22 C 1.53777 * 87.08068 * 334.56318 * 8 7 5 23 23 H 1.09000 * 109.46697 * 60.00527 * 1 2 3 24 24 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47122 * 300.00342 * 1 2 3 26 26 H 1.09000 * 113.62115 * 25.42794 * 7 5 3 27 27 H 1.09004 * 113.61297 * 254.52764 * 7 5 3 28 28 H 0.97003 * 120.00438 * 287.50062 * 10 8 7 29 29 H 1.08001 * 126.45624 * 0.02562 * 14 13 11 30 30 H 1.07998 * 126.07071 * 180.28353 * 15 14 13 31 31 H 1.08999 * 109.46929 * 269.68931 * 17 16 15 32 32 H 0.96705 * 114.00508 * 299.99595 * 18 17 16 33 33 H 1.48499 * 110.00267 * 58.68111 * 19 17 16 34 34 H 1.48504 * 109.99964 * 179.97438 * 19 17 16 35 35 H 1.08996 * 109.47022 * 85.42195 * 21 20 16 36 36 H 1.08998 * 109.47012 * 205.41916 * 21 20 16 37 37 H 1.08994 * 109.47096 * 325.42384 * 21 20 16 38 38 H 1.09003 * 113.61390 * 139.98046 * 22 8 7 39 39 H 1.08997 * 113.61924 * 270.80216 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1916 1.1232 -1.3961 8 6 5.1814 2.2266 -0.9866 9 1 5.3979 2.9386 -1.7832 10 7 6.3905 1.7179 -0.3343 11 6 7.5671 1.7309 -0.9916 12 8 7.6447 2.2489 -2.0900 13 6 8.7539 1.1207 -0.3830 14 6 8.7901 0.4101 0.7980 15 6 10.1150 0.0084 0.9954 16 6 10.8503 0.4783 -0.0407 17 6 12.3325 0.2781 -0.2253 18 8 12.6389 0.2482 -1.6208 19 14 12.8438 -1.3333 0.5573 20 7 10.0344 1.1529 -0.8870 21 6 10.4469 1.8076 -2.1309 22 6 4.1077 2.7143 0.0004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.5243 1.4143 -2.2073 27 1 4.6621 0.1539 -1.5610 28 1 6.3443 1.3716 0.5706 29 1 7.9522 0.1989 1.4458 30 1 10.4864 -0.5715 1.8273 31 1 12.8717 1.0990 0.2475 32 1 12.1927 -0.4591 -2.1064 33 1 12.0923 -2.4573 -0.0568 34 1 14.3034 -1.5428 0.3815 35 1 10.4456 1.0799 -2.9423 36 1 9.7517 2.6139 -2.3649 37 1 11.4502 2.2163 -2.0111 38 1 4.5104 3.0294 0.9631 39 1 3.4183 3.4414 -0.4285 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_10803936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:18 Heat of formation + Delta-G solvation = -69.791480 kcal Electronic energy + Delta-G solvation = -23624.160363 eV Core-core repulsion = 19921.688871 eV Total energy + Delta-G solvation = -3702.471492 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61316 -41.96502 -40.62959 -39.03733 -37.86440 -37.44459 -34.76374 -33.59818 -31.36885 -29.42521 -27.58921 -27.39249 -26.85383 -26.24800 -23.45661 -22.50320 -21.57068 -20.63852 -20.26589 -19.07259 -18.72288 -18.18939 -17.83019 -17.42926 -17.08502 -16.94077 -16.36567 -16.06241 -15.65219 -15.40711 -15.04550 -14.91212 -14.73892 -14.44376 -14.26168 -14.21897 -13.76660 -13.73466 -13.47664 -13.26925 -13.13002 -12.94775 -12.85649 -12.40802 -11.95417 -11.88071 -11.83399 -11.76565 -11.39227 -11.24298 -10.86501 -10.24357 -9.72509 -9.08562 -4.85948 0.36370 1.06855 1.19546 1.53526 1.72718 1.74480 1.77463 2.02473 2.29855 2.32259 3.20600 3.22317 3.31570 3.58686 3.62035 3.74645 3.77378 3.96668 4.06877 4.26157 4.27731 4.28754 4.38190 4.47790 4.51138 4.56772 4.62530 4.66218 4.68074 4.70763 4.80448 4.88452 4.98828 5.12990 5.21120 5.34814 5.44615 5.74928 6.01501 6.14331 6.32734 6.46286 6.65534 7.10471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.468 3.532 4 O -0.539 6.539 5 C -0.103 4.103 6 H 0.156 0.844 7 C -0.128 4.128 8 C 0.125 3.875 9 H 0.095 0.905 10 N -0.686 5.686 11 C 0.591 3.409 12 O -0.586 6.586 13 C -0.085 4.085 14 C -0.121 4.121 15 C -0.202 4.202 16 C 0.007 3.993 17 C -0.068 4.068 18 O -0.549 6.549 19 Si 0.817 3.183 20 N -0.408 5.408 21 C 0.073 3.927 22 C -0.117 4.117 23 H 0.059 0.941 24 H 0.128 0.872 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.420 0.580 29 H 0.179 0.821 30 H 0.185 0.815 31 H 0.132 0.868 32 H 0.385 0.615 33 H -0.291 1.291 34 H -0.300 1.300 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -4.213 5.948 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.313 3.687 4 O -0.429 6.429 5 C -0.122 4.122 6 H 0.173 0.827 7 C -0.167 4.167 8 C 0.019 3.981 9 H 0.114 0.886 10 N -0.338 5.338 11 C 0.380 3.620 12 O -0.468 6.468 13 C -0.198 4.198 14 C -0.148 4.148 15 C -0.225 4.225 16 C -0.111 4.111 17 C -0.175 4.175 18 O -0.356 6.356 19 Si 0.719 3.281 20 N -0.082 5.082 21 C -0.068 4.068 22 C -0.155 4.155 23 H 0.077 0.923 24 H 0.146 0.854 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.259 0.741 29 H 0.197 0.803 30 H 0.202 0.798 31 H 0.149 0.851 32 H 0.234 0.766 33 H -0.218 1.218 34 H -0.228 1.228 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.772 -3.638 4.848 6.110 hybrid contribution -0.759 0.134 -1.274 1.489 sum 0.013 -3.504 3.574 5.005 Atomic orbital electron populations 1.23516 0.75176 1.05555 1.02396 1.86522 1.24654 1.33226 1.83475 1.24143 0.92716 0.80965 0.70919 1.90676 1.67958 1.37486 1.46747 1.22788 0.85683 1.01477 1.02259 0.82675 1.23365 0.97421 1.01113 0.94784 1.21699 0.83334 0.96395 0.96673 0.88645 1.45107 1.05855 1.63872 1.18917 1.17212 0.82892 0.77833 0.84024 1.90789 1.85763 1.47756 1.22449 1.20153 0.85583 1.13792 1.00249 1.21760 0.98967 0.99257 0.94788 1.21031 0.93010 1.07622 1.00849 1.21491 0.94154 1.01210 0.94232 1.25254 0.90182 1.15602 0.86511 1.86572 1.72710 1.56761 1.19595 0.93352 0.75590 0.70383 0.88734 1.43903 1.06231 1.39225 1.18823 1.22205 1.02241 0.98638 0.83688 1.23287 0.96065 0.94674 1.01473 0.92257 0.85415 0.91937 0.88867 0.88918 0.74124 0.80340 0.79843 0.85066 0.76633 1.21796 1.22753 0.90555 0.89957 0.88755 0.87785 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.66 10.57 -51.40 -0.54 -1.20 16 3 C 0.47 1.23 7.48 71.24 0.53 1.76 16 4 O -0.54 -4.98 15.65 21.96 0.34 -4.64 16 5 C -0.10 0.45 4.14 -11.01 -0.05 0.41 16 6 H 0.16 -1.59 8.14 -2.39 -0.02 -1.61 16 7 C -0.13 0.40 7.43 31.12 0.23 0.63 16 8 C 0.12 -0.25 4.36 45.52 0.20 -0.05 16 9 H 0.10 0.26 7.42 -2.38 -0.02 0.24 16 10 N -0.69 2.05 5.24 -444.01 -2.32 -0.28 16 11 C 0.59 2.71 7.77 86.44 0.67 3.38 16 12 O -0.59 -7.24 14.22 -4.32 -0.06 -7.31 16 13 C -0.08 -0.23 6.88 40.35 0.28 0.04 16 14 C -0.12 0.40 10.35 22.57 0.23 0.64 16 15 C -0.20 0.77 9.37 22.01 0.21 0.97 16 16 C 0.01 0.00 6.15 41.34 0.25 0.25 16 17 C -0.07 0.18 2.90 71.24 0.21 0.38 16 18 O -0.55 -0.17 10.49 -148.98 -1.56 -1.74 16 19 Si 0.82 -3.96 31.09 68.60 2.13 -1.82 16 20 N -0.41 -1.48 3.16 -519.72 -1.64 -3.12 16 21 C 0.07 0.27 9.27 127.77 1.18 1.45 16 22 C -0.12 0.46 7.15 31.12 0.22 0.68 16 23 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 24 H 0.13 -0.90 8.14 -2.39 -0.02 -0.91 16 25 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 26 H 0.09 -0.16 8.09 -2.39 -0.02 -0.18 16 27 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.42 -4.02 7.65 -92.71 -0.71 -4.73 16 29 H 0.18 -1.93 7.49 -2.91 -0.02 -1.95 16 30 H 0.18 -1.97 6.84 -2.91 -0.02 -1.99 16 31 H 0.13 -0.58 7.96 -2.39 -0.02 -0.60 16 32 H 0.38 -1.44 8.70 -74.05 -0.64 -2.09 16 33 H -0.29 -0.25 7.11 99.48 0.71 0.46 16 34 H -0.30 -0.78 7.11 99.48 0.71 -0.07 16 35 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.08 0.61 6.19 -2.39 -0.01 0.60 16 37 H 0.09 0.22 7.10 -2.39 -0.02 0.20 16 38 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.10 -0.04 7.44 -2.39 -0.02 -0.06 16 Total: 0.00 -23.64 330.29 1.49 -22.15 By element: Atomic # 1 Polarization: -13.55 SS G_CDS: -0.22 Total: -13.77 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.37 Total: 11.73 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -3.97 Total: -3.40 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.82 Total: -14.88 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.13 Total: -1.82 kcal Total: -23.64 1.49 -22.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_10803936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.643 kcal (2) G-P(sol) polarization free energy of solvation -23.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds