Wall clock time and date at job start Sat Mar 6 2021 16:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 116.99924 * 2 1 4 4 O 1.20823 * 120.00491 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99749 * 179.97438 * 3 2 1 6 6 H 1.09003 * 112.85387 * 311.19488 * 5 3 2 7 7 C 1.53781 * 113.69375 * 82.46386 * 5 3 2 8 8 C 1.53781 * 87.08213 * 139.99104 * 7 5 3 9 9 H 1.09001 * 113.68881 * 220.01056 * 8 7 5 10 10 N 1.46502 * 113.61379 * 89.12046 * 8 7 5 11 11 C 1.34767 * 120.00016 * 107.50251 * 10 8 7 12 12 O 1.21693 * 120.00232 * 359.97438 * 11 10 8 13 13 C 1.46678 * 119.99909 * 179.97438 * 11 10 8 14 14 C 1.37875 * 126.23483 * 179.97438 * 13 11 10 15 15 C 1.50698 * 126.45543 * 0.02562 * 14 13 11 16 16 C 1.39836 * 107.08319 * 179.72463 * 14 13 11 17 17 C 1.50704 * 126.06425 * 180.28006 * 16 14 13 18 18 O 1.42898 * 109.47275 * 65.18261 * 17 16 14 19 19 Si 1.86301 * 109.47056 * 305.18231 * 17 16 14 20 20 C 1.35442 * 107.86527 * 0.41446 * 16 14 13 21 21 C 1.50713 * 125.56213 * 179.83983 * 20 16 14 22 22 N 1.35528 * 108.87673 * 359.57956 * 20 16 14 23 23 C 1.53777 * 87.08254 * 334.56909 * 8 7 5 24 24 H 1.09006 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47424 * 300.00161 * 1 2 3 26 26 H 1.09003 * 109.46981 * 60.00564 * 1 2 3 27 27 H 1.08998 * 113.61329 * 25.44109 * 7 5 3 28 28 H 1.09003 * 113.61723 * 254.54517 * 7 5 3 29 29 H 0.97001 * 119.99733 * 287.49701 * 10 8 7 30 30 H 1.09000 * 109.47293 * 89.97314 * 15 14 13 31 31 H 1.09003 * 109.47210 * 209.97395 * 15 14 13 32 32 H 1.08995 * 109.47171 * 329.97118 * 15 14 13 33 33 H 1.09005 * 109.46755 * 185.18251 * 17 16 14 34 34 H 0.96697 * 114.00047 * 299.99645 * 18 17 16 35 35 H 1.48503 * 110.00118 * 184.18401 * 19 17 16 36 36 H 1.48507 * 109.99918 * 305.49848 * 19 17 16 37 37 H 1.09001 * 109.47103 * 275.02739 * 21 20 16 38 38 H 1.09005 * 109.46707 * 155.03052 * 21 20 16 39 39 H 1.08996 * 109.46732 * 35.02898 * 21 20 16 40 40 H 0.97001 * 125.68398 * 180.23737 * 22 20 16 41 41 H 1.08993 * 113.61650 * 139.98259 * 23 8 7 42 42 H 1.08998 * 113.61757 * 270.88552 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0234 0.6364 0.7567 7 6 4.1936 1.1224 -1.3952 8 6 5.1828 2.2260 -0.9848 9 1 5.4004 2.9375 -1.7814 10 7 6.3911 1.7175 -0.3306 11 6 7.5684 1.7302 -0.9862 12 8 7.6279 2.1637 -2.1218 13 6 8.7782 1.2216 -0.3311 14 6 10.0426 1.1734 -0.8787 15 6 10.4391 1.6324 -2.2582 16 6 10.8890 0.6246 0.0897 17 6 12.3693 0.3841 -0.0593 18 8 13.0441 1.6365 -0.1945 19 14 12.6802 -0.6555 -1.5736 20 6 10.1418 0.3447 1.1842 21 6 10.6554 -0.2634 2.4640 22 7 8.8581 0.7061 0.9428 23 6 4.1078 2.7141 0.0005 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.5274 1.4131 -2.2074 28 1 4.6643 0.1529 -1.5589 29 1 6.3436 1.3718 0.5744 30 1 10.7298 2.6823 -2.2222 31 1 11.2790 1.0348 -2.6127 32 1 9.5953 1.5121 -2.9376 33 1 12.7432 -0.1368 0.8222 34 1 12.7609 2.1552 -0.9598 35 1 14.1248 -0.9843 -1.6762 36 1 11.8788 -1.9039 -1.5060 37 1 10.6726 -1.3492 2.3690 38 1 10.0007 0.0188 3.2886 39 1 11.6640 0.1003 2.6599 40 1 8.1186 0.6161 1.5640 41 1 4.5091 3.0297 0.9635 42 1 3.4181 3.4400 -0.4301 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_12297754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:24 Heat of formation + Delta-G solvation = -85.184137 kcal Electronic energy + Delta-G solvation = -25627.671336 eV Core-core repulsion = 21768.994749 eV Total energy + Delta-G solvation = -3858.676587 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.74543 -41.99568 -40.62793 -39.03522 -37.68496 -37.38308 -34.68847 -33.76615 -32.85470 -29.58283 -29.32080 -27.89478 -27.02677 -26.89573 -26.10937 -23.04461 -22.38569 -21.03024 -20.63706 -20.07086 -19.55941 -18.74696 -17.90220 -17.62174 -17.43620 -17.10792 -16.70402 -16.48246 -15.95133 -15.66642 -15.22702 -15.19753 -15.04113 -14.70954 -14.36047 -14.29828 -14.09977 -13.96256 -13.77896 -13.74443 -13.56156 -13.31750 -13.23990 -13.20116 -12.91999 -12.66231 -12.31074 -12.01513 -11.91073 -11.86146 -11.84043 -11.38979 -11.01441 -10.48361 -10.31755 -9.58047 -9.03269 -4.83743 0.34779 1.08881 1.25611 1.59922 1.63703 1.81528 1.84572 1.93970 2.12414 2.28440 3.06582 3.15786 3.49749 3.59835 3.62894 3.69471 3.71430 3.87290 3.95942 4.00746 4.10762 4.18722 4.28970 4.31585 4.36493 4.43313 4.46400 4.49451 4.53036 4.56838 4.63307 4.70113 4.76503 4.81154 4.87613 4.95647 5.09927 5.27988 5.32546 5.36539 5.65353 5.86333 6.19827 6.36033 6.66606 6.69605 7.06148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.503 6.503 5 C -0.113 4.113 6 H 0.122 0.878 7 C -0.131 4.131 8 C 0.125 3.875 9 H 0.118 0.882 10 N -0.718 5.718 11 C 0.596 3.404 12 O -0.517 6.517 13 C -0.061 4.061 14 C -0.057 4.057 15 C -0.095 4.095 16 C -0.207 4.207 17 C -0.028 4.028 18 O -0.542 6.542 19 Si 0.669 3.331 20 C 0.080 3.920 21 C -0.098 4.098 22 N -0.537 5.537 23 C -0.125 4.125 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.394 0.606 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.376 0.624 35 H -0.253 1.253 36 H -0.257 1.257 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.415 0.585 41 H 0.085 0.915 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -2.238 2.312 3.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.390 6.390 5 C -0.133 4.133 6 H 0.140 0.860 7 C -0.170 4.170 8 C 0.020 3.980 9 H 0.136 0.864 10 N -0.369 5.369 11 C 0.385 3.615 12 O -0.392 6.392 13 C -0.173 4.173 14 C -0.066 4.066 15 C -0.151 4.151 16 C -0.214 4.214 17 C -0.140 4.140 18 O -0.347 6.347 19 Si 0.570 3.430 20 C -0.038 4.038 21 C -0.155 4.155 22 N -0.134 5.134 23 C -0.163 4.163 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.228 0.772 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.223 0.777 35 H -0.178 1.178 36 H -0.182 1.182 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.252 0.748 41 H 0.103 0.897 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.300 -2.596 1.759 3.395 hybrid contribution -1.097 -0.337 1.703 2.054 sum -2.397 -2.934 3.462 5.132 Atomic orbital electron populations 1.23331 0.75877 1.04036 1.02760 1.86517 1.23790 1.33334 1.83790 1.23537 0.91632 0.81459 0.72173 1.90692 1.66951 1.36407 1.44941 1.22652 0.87747 1.01008 1.01853 0.85980 1.23407 0.97811 1.01231 0.94575 1.21791 0.83252 0.96385 0.96621 0.86367 1.45557 1.07729 1.65501 1.18152 1.16972 0.81255 0.77852 0.85437 1.90846 1.85087 1.46155 1.17140 1.19959 0.95603 1.14629 0.87075 1.19734 0.90283 1.00084 0.96480 1.20525 1.02004 1.00776 0.91801 1.19526 0.96282 1.10941 0.94636 1.24270 0.88008 0.92301 1.09417 1.86485 1.64226 1.31575 1.52412 0.94584 0.80573 0.81443 0.86369 1.20305 0.83408 1.02531 0.97534 1.20522 1.02485 1.00888 0.91616 1.41818 1.09281 1.49119 1.13188 1.23376 0.97033 0.94816 1.01035 0.87841 0.91736 0.91673 0.88106 0.89399 0.77193 0.90218 0.91427 0.89026 0.87412 0.77687 1.17817 1.18171 0.90174 0.91093 0.89309 0.74765 0.89674 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.31 10.57 -39.25 -0.41 -0.72 16 3 C 0.47 0.49 7.49 36.01 0.27 0.76 16 4 O -0.50 -1.98 15.65 -18.75 -0.29 -2.28 16 5 C -0.11 0.24 4.13 -90.96 -0.38 -0.13 16 6 H 0.12 -0.51 8.14 -51.93 -0.42 -0.93 16 7 C -0.13 0.27 7.43 -25.92 -0.19 0.07 16 8 C 0.12 -0.22 4.32 -67.12 -0.29 -0.51 16 9 H 0.12 -0.04 7.46 -51.93 -0.39 -0.43 16 10 N -0.72 1.53 5.26 -54.33 -0.29 1.24 16 11 C 0.60 0.57 7.79 -12.86 -0.10 0.47 16 12 O -0.52 -2.07 14.40 5.19 0.07 -2.00 16 13 C -0.06 -0.03 7.06 -81.98 -0.58 -0.61 16 14 C -0.06 -0.05 5.82 -104.16 -0.61 -0.66 16 15 C -0.10 0.05 8.64 36.00 0.31 0.36 16 16 C -0.21 -0.15 4.66 -105.02 -0.49 -0.64 16 17 C -0.03 -0.01 2.86 36.01 0.10 0.09 16 18 O -0.54 -0.65 12.88 -35.23 -0.45 -1.10 16 19 Si 0.67 0.24 29.31 -169.99 -4.98 -4.74 16 20 C 0.08 -0.04 7.13 -81.95 -0.58 -0.63 16 21 C -0.10 0.27 9.90 36.01 0.36 0.63 16 22 N -0.54 0.97 5.99 -5.69 -0.03 0.93 16 23 C -0.12 0.29 7.15 -25.92 -0.19 0.10 16 24 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 25 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 26 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16 27 H 0.10 -0.18 8.10 -51.93 -0.42 -0.60 16 28 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 29 H 0.39 -1.90 7.83 -40.82 -0.32 -2.22 16 30 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.07 -0.17 4.34 -51.93 -0.23 -0.39 16 32 H 0.09 0.09 6.48 -51.93 -0.34 -0.25 16 33 H 0.11 0.01 6.76 -51.93 -0.35 -0.34 16 34 H 0.38 -0.73 7.84 45.56 0.36 -0.38 16 35 H -0.25 -0.78 7.11 56.52 0.40 -0.38 16 36 H -0.26 -0.79 7.11 56.52 0.40 -0.39 16 37 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 38 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 39 H 0.09 -0.22 7.42 -51.93 -0.39 -0.61 16 40 H 0.41 -2.08 8.19 -40.82 -0.33 -2.42 16 41 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 42 H 0.11 -0.12 7.44 -51.93 -0.39 -0.51 16 LS Contribution 348.31 15.07 5.25 5.25 Total: 0.00 -9.63 348.31 -8.23 -17.86 By element: Atomic # 1 Polarization: -8.99 SS G_CDS: -5.79 Total: -14.78 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.30 Total: 0.34 kcal Atomic # 7 Polarization: 2.49 SS G_CDS: -0.32 Total: 2.17 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -1.09 Total: -6.11 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: -4.98 Total: -4.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -9.63 -8.23 -17.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_12297754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.327 kcal (2) G-P(sol) polarization free energy of solvation -9.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds