Wall clock time and date at job start Sat Mar 6 2021 16:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.85007 * 311.20117 * 5 3 2 7 7 C 1.53781 * 113.60776 * 82.50380 * 5 3 2 8 8 C 1.53783 * 87.08007 * 139.98476 * 7 5 3 9 9 H 1.08997 * 113.61269 * 220.01553 * 8 7 5 10 10 N 1.46498 * 113.69126 * 89.12540 * 8 7 5 11 11 C 1.34777 * 119.99952 * 107.46730 * 10 8 7 12 12 O 1.21280 * 120.00155 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.99820 * 179.97438 * 11 10 8 14 14 C 1.50700 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.38241 * 120.00003 * 269.73033 * 14 13 11 16 16 C 1.38237 * 119.99807 * 179.78565 * 15 14 13 17 17 C 1.38227 * 119.99906 * 0.46014 * 16 15 14 18 18 C 1.50703 * 120.00077 * 179.79094 * 17 16 15 19 19 O 1.42893 * 109.47517 * 119.97852 * 18 17 16 20 20 Si 1.86305 * 109.46975 * 359.97438 * 18 17 16 21 21 C 1.38235 * 120.00429 * 359.77053 * 17 16 15 22 22 C 1.38229 * 120.00227 * 90.00007 * 14 13 11 23 23 C 1.53780 * 87.08117 * 334.56585 * 8 7 5 24 24 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 27 27 H 1.09004 * 113.61426 * 254.52663 * 7 5 3 28 28 H 1.09001 * 113.62021 * 25.43661 * 7 5 3 29 29 H 0.97002 * 120.00257 * 287.46272 * 10 8 7 30 30 H 1.08997 * 109.47246 * 299.99918 * 13 11 10 31 31 H 1.09007 * 109.47196 * 59.99872 * 13 11 10 32 32 H 1.07999 * 119.99697 * 0.02562 * 15 14 13 33 33 H 1.07999 * 119.99676 * 180.25162 * 16 15 14 34 34 H 1.08998 * 109.47098 * 239.98228 * 18 17 16 35 35 H 0.96703 * 114.00393 * 300.00820 * 19 18 17 36 36 H 1.48500 * 110.00005 * 58.67969 * 20 18 17 37 37 H 1.48502 * 109.99893 * 180.02562 * 20 18 17 38 38 H 1.08003 * 120.00303 * 179.97438 * 21 17 16 39 39 H 1.08009 * 119.99830 * 359.97438 * 22 14 13 40 40 H 1.08998 * 113.61743 * 270.88807 * 23 8 7 41 41 H 1.08993 * 113.69443 * 139.98862 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0234 0.6366 0.7567 7 6 4.1915 1.1234 -1.3962 8 6 5.1814 2.2268 -0.9867 9 1 5.3967 2.9380 -1.7840 10 7 6.3913 1.7198 -0.3346 11 6 7.5675 1.7333 -0.9925 12 8 7.6242 2.1648 -2.1245 13 6 8.8122 1.2123 -0.3214 14 6 9.9813 1.3381 -1.2640 15 6 10.2935 0.2990 -2.1206 16 6 11.3632 0.4162 -2.9883 17 6 12.1264 1.5687 -2.9928 18 6 13.2954 1.6946 -3.9355 19 8 13.0902 2.8120 -4.8022 20 14 13.4444 0.1399 -4.9511 21 6 11.8171 2.6059 -2.1329 22 6 10.7448 2.4904 -1.2682 23 6 4.1078 2.7143 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 4.6621 0.1541 -1.5611 28 1 3.5242 1.4146 -2.2073 29 1 6.3459 1.3744 0.5707 30 1 9.0083 1.7918 0.5807 31 1 8.6707 0.1644 -0.0565 32 1 9.6993 -0.6028 -2.1145 33 1 11.6046 -0.3940 -3.6603 34 1 14.2103 1.8429 -3.3619 35 1 12.2921 2.7480 -5.3444 36 1 12.1911 -0.0908 -5.7135 37 1 14.5941 0.2512 -5.8845 38 1 12.4137 3.5062 -2.1362 39 1 10.5033 3.3007 -0.5962 40 1 3.4174 3.4404 -0.4287 41 1 4.5091 3.0298 0.9635 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_12335836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:33 Heat of formation + Delta-G solvation = -97.987513 kcal Electronic energy + Delta-G solvation = -24128.405367 eV Core-core repulsion = 20361.910973 eV Total energy + Delta-G solvation = -3766.494394 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05749 -41.14889 -40.35278 -39.12742 -37.67597 -37.33872 -34.47862 -33.91340 -31.91604 -30.06368 -29.25785 -27.07155 -26.97384 -25.65358 -23.79369 -22.84439 -22.25316 -21.44044 -20.47389 -19.00444 -18.48427 -18.16667 -17.69568 -17.37488 -17.35105 -16.96484 -16.56121 -16.21070 -16.13560 -15.65867 -15.53656 -15.05177 -14.78422 -14.71303 -14.48018 -14.27619 -13.89372 -13.84419 -13.57346 -13.33738 -13.21331 -13.11305 -12.88039 -12.79187 -12.21724 -11.98187 -11.95759 -11.86294 -11.81451 -11.55974 -11.35249 -10.97221 -10.54666 -10.20631 -9.83675 -9.60412 -4.92891 0.25776 0.49352 1.12073 1.32985 1.56179 1.64948 1.67330 1.97404 2.00673 2.78200 3.11477 3.20411 3.41356 3.52599 3.55152 3.65121 3.76972 3.82977 3.89493 3.92754 4.04146 4.13073 4.20879 4.22388 4.35110 4.36066 4.48264 4.50085 4.56217 4.59062 4.61098 4.68626 4.70723 4.73073 4.87670 5.01399 5.09432 5.35460 5.39052 5.41598 5.57064 5.59886 6.02235 6.35166 6.45461 6.69773 7.14677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.504 6.504 5 C -0.112 4.112 6 H 0.125 0.875 7 C -0.132 4.132 8 C 0.122 3.878 9 H 0.113 0.887 10 N -0.717 5.717 11 C 0.518 3.482 12 O -0.523 6.523 13 C -0.103 4.103 14 C -0.064 4.064 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.075 4.075 19 O -0.530 6.530 20 Si 0.683 3.317 21 C -0.091 4.091 22 C -0.104 4.104 23 C -0.125 4.125 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.403 0.597 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.377 0.623 36 H -0.260 1.260 37 H -0.258 1.258 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -4.830 5.232 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.391 6.391 5 C -0.131 4.131 6 H 0.143 0.857 7 C -0.171 4.171 8 C 0.017 3.983 9 H 0.131 0.869 10 N -0.370 5.370 11 C 0.304 3.696 12 O -0.398 6.398 13 C -0.143 4.143 14 C -0.065 4.065 15 C -0.118 4.118 16 C -0.132 4.132 17 C -0.117 4.117 18 C -0.185 4.185 19 O -0.337 6.337 20 Si 0.585 3.415 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.163 4.163 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.237 0.763 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.225 0.775 36 H -0.185 1.185 37 H -0.183 1.183 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.091 -4.367 3.865 5.833 hybrid contribution -1.187 0.681 0.108 1.372 sum -1.277 -3.686 3.973 5.568 Atomic orbital electron populations 1.23327 0.75930 1.04019 1.02734 1.86517 1.23749 1.33359 1.83800 1.23581 0.91697 0.81434 0.72124 1.90691 1.66983 1.36428 1.44986 1.22655 0.87618 1.01057 1.01801 0.85687 1.23395 0.97885 1.01222 0.94565 1.21769 0.83647 0.96323 0.96605 0.86893 1.45712 1.07444 1.65261 1.18573 1.20629 0.84245 0.78204 0.86528 1.90769 1.85748 1.45043 1.18193 1.20694 0.90723 1.04107 0.98750 1.19255 0.95368 0.94709 0.97123 1.20908 0.96956 0.98656 0.95261 1.20939 0.95753 0.97092 0.99412 1.20275 0.97872 0.95051 0.98514 1.25028 0.98636 0.99646 0.95146 1.86585 1.48737 1.41982 1.56351 0.95103 0.80752 0.82125 0.83560 1.20964 0.97050 0.98352 0.94537 1.21018 0.95147 0.96854 0.99145 1.23363 0.97058 0.94790 1.01064 0.91732 0.87842 0.91733 0.89447 0.88375 0.76277 0.87545 0.87501 0.85769 0.85587 0.86432 0.77545 1.18527 1.18308 0.85616 0.85977 0.86995 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.35 10.57 -39.25 -0.41 -0.76 16 3 C 0.47 0.57 7.48 36.01 0.27 0.84 16 4 O -0.50 -2.10 15.65 -18.75 -0.29 -2.39 16 5 C -0.11 0.23 4.14 -90.96 -0.38 -0.15 16 6 H 0.13 -0.53 8.14 -51.93 -0.42 -0.95 16 7 C -0.13 0.24 7.43 -25.92 -0.19 0.05 16 8 C 0.12 -0.20 4.32 -67.12 -0.29 -0.49 16 9 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 10 N -0.72 1.97 5.27 -53.02 -0.28 1.69 16 11 C 0.52 -0.07 7.82 -10.98 -0.09 -0.16 16 12 O -0.52 -2.43 15.63 5.56 0.09 -2.34 16 13 C -0.10 0.27 5.83 -29.03 -0.17 0.11 16 14 C -0.06 -0.01 4.37 -104.62 -0.46 -0.47 16 15 C -0.10 -0.03 9.70 -39.58 -0.38 -0.42 16 16 C -0.11 -0.06 8.67 -39.59 -0.34 -0.40 16 17 C -0.12 -0.13 5.39 -104.63 -0.56 -0.69 16 18 C -0.07 -0.05 2.82 36.01 0.10 0.06 16 19 O -0.53 -1.24 12.77 -35.23 -0.45 -1.69 16 20 Si 0.68 -0.15 29.79 -169.99 -5.06 -5.22 16 21 C -0.09 -0.13 9.61 -39.58 -0.38 -0.51 16 22 C -0.10 -0.09 9.70 -39.59 -0.38 -0.47 16 23 C -0.12 0.27 7.15 -25.92 -0.19 0.08 16 24 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 25 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 26 H 0.06 -0.04 8.13 -51.93 -0.42 -0.47 16 27 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 28 H 0.10 -0.13 8.09 -51.93 -0.42 -0.55 16 29 H 0.40 -2.31 8.70 -40.82 -0.36 -2.66 16 30 H 0.11 -0.50 8.09 -51.93 -0.42 -0.92 16 31 H 0.11 -0.53 8.08 -51.93 -0.42 -0.95 16 32 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 33 H 0.13 -0.15 4.88 -52.49 -0.26 -0.41 16 34 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 35 H 0.38 -0.03 8.70 45.56 0.40 0.36 16 36 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 37 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 38 H 0.13 0.12 8.06 -52.48 -0.42 -0.30 16 39 H 0.12 -0.08 8.06 -52.48 -0.42 -0.50 16 40 H 0.11 -0.08 7.43 -51.93 -0.39 -0.46 16 41 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 351.31 15.07 5.29 5.29 Total: 0.00 -10.09 351.31 -9.16 -19.24 By element: Atomic # 1 Polarization: -6.57 SS G_CDS: -5.66 Total: -12.23 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.38 Total: -1.60 kcal Atomic # 7 Polarization: 1.97 SS G_CDS: -0.28 Total: 1.69 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -1.07 Total: -7.18 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: -5.06 Total: -5.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -10.09 -9.16 -19.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_12335836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.743 kcal (2) G-P(sol) polarization free energy of solvation -10.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds