Wall clock time and date at job start Sat Mar 6 2021 16:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.85007 * 311.20117 * 5 3 2 7 7 C 1.53781 * 113.60776 * 82.50380 * 5 3 2 8 8 C 1.53783 * 87.08007 * 139.98476 * 7 5 3 9 9 H 1.08997 * 113.61269 * 220.01553 * 8 7 5 10 10 N 1.46498 * 113.69126 * 89.12540 * 8 7 5 11 11 C 1.34777 * 119.99952 * 107.46730 * 10 8 7 12 12 O 1.21280 * 120.00155 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.99820 * 179.97438 * 11 10 8 14 14 C 1.50700 * 109.47241 * 179.97438 * 13 11 10 15 15 C 1.38241 * 120.00003 * 269.73033 * 14 13 11 16 16 C 1.38237 * 119.99807 * 179.78565 * 15 14 13 17 17 C 1.38227 * 119.99906 * 0.46014 * 16 15 14 18 18 C 1.50703 * 120.00077 * 179.79094 * 17 16 15 19 19 O 1.42893 * 109.47517 * 119.97852 * 18 17 16 20 20 Si 1.86305 * 109.46975 * 359.97438 * 18 17 16 21 21 C 1.38235 * 120.00429 * 359.77053 * 17 16 15 22 22 C 1.38229 * 120.00227 * 90.00007 * 14 13 11 23 23 C 1.53780 * 87.08117 * 334.56585 * 8 7 5 24 24 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 27 27 H 1.09004 * 113.61426 * 254.52663 * 7 5 3 28 28 H 1.09001 * 113.62021 * 25.43661 * 7 5 3 29 29 H 0.97002 * 120.00257 * 287.46272 * 10 8 7 30 30 H 1.08997 * 109.47246 * 299.99918 * 13 11 10 31 31 H 1.09007 * 109.47196 * 59.99872 * 13 11 10 32 32 H 1.07999 * 119.99697 * 0.02562 * 15 14 13 33 33 H 1.07999 * 119.99676 * 180.25162 * 16 15 14 34 34 H 1.08998 * 109.47098 * 239.98228 * 18 17 16 35 35 H 0.96703 * 114.00393 * 300.00820 * 19 18 17 36 36 H 1.48500 * 110.00005 * 58.67969 * 20 18 17 37 37 H 1.48502 * 109.99893 * 180.02562 * 20 18 17 38 38 H 1.08003 * 120.00303 * 179.97438 * 21 17 16 39 39 H 1.08009 * 119.99830 * 359.97438 * 22 14 13 40 40 H 1.08998 * 113.61743 * 270.88807 * 23 8 7 41 41 H 1.08993 * 113.69443 * 139.98862 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0234 0.6366 0.7567 7 6 4.1915 1.1234 -1.3962 8 6 5.1814 2.2268 -0.9867 9 1 5.3967 2.9380 -1.7840 10 7 6.3913 1.7198 -0.3346 11 6 7.5675 1.7333 -0.9925 12 8 7.6242 2.1648 -2.1245 13 6 8.8122 1.2123 -0.3214 14 6 9.9813 1.3381 -1.2640 15 6 10.2935 0.2990 -2.1206 16 6 11.3632 0.4162 -2.9883 17 6 12.1264 1.5687 -2.9928 18 6 13.2954 1.6946 -3.9355 19 8 13.0902 2.8120 -4.8022 20 14 13.4444 0.1399 -4.9511 21 6 11.8171 2.6059 -2.1329 22 6 10.7448 2.4904 -1.2682 23 6 4.1078 2.7143 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 4.6621 0.1541 -1.5611 28 1 3.5242 1.4146 -2.2073 29 1 6.3459 1.3744 0.5707 30 1 9.0083 1.7918 0.5807 31 1 8.6707 0.1644 -0.0565 32 1 9.6993 -0.6028 -2.1145 33 1 11.6046 -0.3940 -3.6603 34 1 14.2103 1.8429 -3.3619 35 1 12.2921 2.7480 -5.3444 36 1 12.1911 -0.0908 -5.7135 37 1 14.5941 0.2512 -5.8845 38 1 12.4137 3.5062 -2.1362 39 1 10.5033 3.3007 -0.5962 40 1 3.4174 3.4404 -0.4287 41 1 4.5091 3.0298 0.9635 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_12335836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:32 Heat of formation + Delta-G solvation = -98.469869 kcal Electronic energy + Delta-G solvation = -24128.426283 eV Core-core repulsion = 20361.910973 eV Total energy + Delta-G solvation = -3766.515310 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05079 -41.14278 -40.33937 -39.11069 -37.76230 -37.44756 -34.44777 -33.85262 -31.90396 -30.00689 -29.20405 -27.00271 -26.84170 -25.63546 -23.78660 -22.82739 -22.23657 -21.38019 -20.39645 -18.99992 -18.55684 -18.16702 -17.67087 -17.40420 -17.29761 -16.92858 -16.51178 -16.21102 -16.17296 -15.63030 -15.47280 -15.03663 -14.79227 -14.67706 -14.46119 -14.27882 -13.97670 -13.76761 -13.48482 -13.33311 -13.13741 -13.04825 -12.83651 -12.76234 -12.26003 -11.99770 -11.88467 -11.82344 -11.75786 -11.61160 -11.38998 -11.00480 -10.62178 -10.11590 -9.84505 -9.59274 -4.95166 0.26352 0.48491 1.05481 1.30132 1.59503 1.63425 1.72238 1.93594 2.10627 2.80011 3.23418 3.33200 3.39044 3.63526 3.66812 3.76394 3.82337 3.93931 4.03211 4.08304 4.08666 4.24828 4.27040 4.40557 4.49469 4.50604 4.56185 4.62576 4.67223 4.67897 4.72564 4.75900 4.82646 4.88895 5.00336 5.07994 5.11990 5.33499 5.40996 5.53376 5.55979 5.62226 6.04968 6.42948 6.56249 6.64108 7.28702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.103 4.103 6 H 0.157 0.843 7 C -0.129 4.129 8 C 0.124 3.876 9 H 0.088 0.912 10 N -0.700 5.700 11 C 0.517 3.483 12 O -0.579 6.579 13 C -0.097 4.097 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.086 4.086 19 O -0.551 6.551 20 Si 0.772 3.228 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.119 4.119 24 H 0.061 0.939 25 H 0.128 0.872 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.421 0.579 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.384 0.616 36 H -0.289 1.289 37 H -0.303 1.303 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -6.340 6.968 9.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.430 6.430 5 C -0.121 4.121 6 H 0.175 0.825 7 C -0.168 4.168 8 C 0.018 3.982 9 H 0.106 0.894 10 N -0.353 5.353 11 C 0.305 3.695 12 O -0.458 6.458 13 C -0.136 4.136 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.142 4.142 17 C -0.127 4.127 18 C -0.194 4.194 19 O -0.359 6.359 20 Si 0.678 3.322 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.157 4.157 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.259 0.741 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.233 0.767 36 H -0.216 1.216 37 H -0.231 1.231 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.227 -5.897 5.669 8.183 hybrid contribution -1.202 1.167 -0.457 1.737 sum -1.429 -4.730 5.212 7.182 Atomic orbital electron populations 1.23517 0.75194 1.05584 1.02362 1.86520 1.24647 1.33240 1.83481 1.24218 0.92849 0.80948 0.70889 1.90676 1.68020 1.37525 1.46787 1.22797 0.85493 1.01517 1.02330 0.82549 1.23349 0.97555 1.01348 0.94517 1.21615 0.84135 0.96119 0.96381 0.89357 1.45547 1.06362 1.64225 1.19156 1.21090 0.85323 0.77246 0.85870 1.90758 1.86571 1.47710 1.20721 1.20775 0.88058 1.06330 0.98453 1.19598 0.95938 0.94200 0.97426 1.21252 0.96951 0.99550 0.94991 1.21166 0.95899 0.97246 0.99844 1.20328 0.98239 0.95411 0.98683 1.25287 0.99000 0.99760 0.95384 1.86549 1.49366 1.43112 1.56834 0.94114 0.76613 0.80458 0.80991 1.21086 0.97741 0.98551 0.95340 1.21253 0.95188 0.97660 0.99339 1.23280 0.96321 0.94556 1.01543 0.91976 0.85346 0.92301 0.88717 0.89491 0.74060 0.85007 0.84415 0.83858 0.84270 0.85745 0.76696 1.21584 1.23137 0.86040 0.85010 0.88824 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.57 10.57 -51.40 -0.54 -1.11 16 3 C 0.47 1.14 7.48 71.24 0.53 1.67 16 4 O -0.54 -5.02 15.65 21.96 0.34 -4.68 16 5 C -0.10 0.52 4.14 -11.01 -0.05 0.48 16 6 H 0.16 -1.78 8.14 -2.39 -0.02 -1.80 16 7 C -0.13 0.50 7.43 31.12 0.23 0.73 16 8 C 0.12 -0.41 4.32 45.52 0.20 -0.21 16 9 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 10 N -0.70 4.93 5.27 -440.04 -2.32 2.62 16 11 C 0.52 -0.66 7.82 87.66 0.69 0.03 16 12 O -0.58 -5.74 15.63 -3.03 -0.05 -5.78 16 13 C -0.10 0.73 5.83 29.10 0.17 0.90 16 14 C -0.07 0.03 4.37 -19.87 -0.09 -0.06 16 15 C -0.11 0.01 9.70 22.27 0.22 0.23 16 16 C -0.12 -0.12 8.67 22.27 0.19 0.07 16 17 C -0.13 -0.36 5.39 -19.87 -0.11 -0.47 16 18 C -0.09 -0.17 2.82 71.24 0.20 0.03 16 19 O -0.55 -3.28 12.77 -148.98 -1.90 -5.18 16 20 Si 0.77 0.04 29.79 68.60 2.04 2.08 16 21 C -0.11 -0.43 9.61 22.27 0.21 -0.21 16 22 C -0.12 -0.22 9.70 22.27 0.22 -0.01 16 23 C -0.12 0.55 7.15 31.12 0.22 0.77 16 24 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 25 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 27 H 0.09 -0.48 8.14 -2.38 -0.02 -0.50 16 28 H 0.09 -0.13 8.09 -2.39 -0.02 -0.15 16 29 H 0.42 -6.07 8.70 -92.71 -0.81 -6.88 16 30 H 0.13 -1.64 8.09 -2.39 -0.02 -1.66 16 31 H 0.14 -1.86 8.08 -2.38 -0.02 -1.88 16 32 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 33 H 0.14 -0.39 4.88 -2.91 -0.01 -0.40 16 34 H 0.12 0.01 7.96 -2.39 -0.02 -0.01 16 35 H 0.38 0.52 8.70 -74.05 -0.64 -0.13 16 36 H -0.29 -1.34 7.11 99.48 0.71 -0.64 16 37 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 38 H 0.12 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 40 H 0.09 -0.03 7.43 -2.39 -0.02 -0.05 16 41 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 Total: 0.00 -26.12 351.31 1.26 -24.86 By element: Atomic # 1 Polarization: -17.55 SS G_CDS: -0.35 Total: -17.90 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.04 Total: 5.09 kcal Atomic # 7 Polarization: 4.93 SS G_CDS: -2.32 Total: 2.62 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -2.15 Total: -16.75 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: 2.04 Total: 2.08 kcal Total: -26.12 1.26 -24.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_12335836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.614 kcal (2) G-P(sol) polarization free energy of solvation -26.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds