Wall clock time and date at job start Sat Mar 6 2021 16:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 116.99667 * 2 1 4 4 O 1.20823 * 120.00373 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99474 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.85477 * 48.80455 * 5 3 2 7 7 C 1.53784 * 113.61377 * 180.02562 * 5 3 2 8 8 C 1.53778 * 87.08104 * 139.98151 * 7 5 3 9 9 H 1.09004 * 113.61104 * 219.93798 * 8 7 5 10 10 N 1.46499 * 113.61783 * 89.11917 * 8 7 5 11 11 C 1.34777 * 120.00199 * 156.52956 * 10 8 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 8 14 14 C 1.50700 * 109.46869 * 179.72354 * 13 11 10 15 15 C 1.38281 * 119.93048 * 269.72069 * 14 13 11 16 16 C 1.38122 * 120.06066 * 179.77241 * 15 14 13 17 17 C 1.38822 * 119.93484 * 0.52501 * 16 15 14 18 18 N 1.40201 * 120.06601 * 179.70461 * 17 16 15 19 19 C 1.36572 * 125.67084 * 114.71770 * 18 17 16 20 20 C 1.50705 * 125.89626 * 359.97438 * 19 18 17 21 21 C 1.34849 * 108.20030 * 179.83149 * 19 18 17 22 22 C 1.40940 * 107.46777 * 0.42717 * 21 19 18 23 23 C 1.50700 * 126.26351 * 179.75965 * 22 21 19 24 24 O 1.42902 * 109.46806 * 254.97183 * 23 22 21 25 25 Si 1.86303 * 109.47221 * 14.96826 * 23 22 21 26 26 C 1.34844 * 107.46875 * 359.73057 * 22 21 19 27 27 C 1.50696 * 125.90110 * 179.97438 * 26 22 21 28 28 C 1.38827 * 119.87233 * 359.73075 * 17 16 15 29 29 C 1.38129 * 119.92878 * 359.97438 * 28 17 16 30 30 C 1.53778 * 87.17243 * 334.52237 * 8 7 5 31 31 H 1.09005 * 109.46807 * 299.99864 * 1 2 3 32 32 H 1.08995 * 109.47379 * 59.99551 * 1 2 3 33 33 H 1.08997 * 109.47038 * 180.02562 * 1 2 3 34 34 H 1.09004 * 113.61394 * 25.42875 * 7 5 3 35 35 H 1.09003 * 113.68865 * 254.54276 * 7 5 3 36 36 H 0.97000 * 119.99484 * 336.52053 * 10 8 7 37 37 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 38 38 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 39 39 H 1.08001 * 119.96890 * 0.02562 * 15 14 13 40 40 H 1.08000 * 120.03352 * 180.25822 * 16 15 14 41 41 H 1.09003 * 109.46922 * 89.99981 * 20 19 18 42 42 H 1.08998 * 109.47134 * 210.00130 * 20 19 18 43 43 H 1.09004 * 109.47152 * 330.00390 * 20 19 18 44 44 H 1.08002 * 126.26447 * 180.15882 * 21 19 18 45 45 H 1.09002 * 109.47414 * 134.97338 * 23 22 21 46 46 H 0.96696 * 113.99997 * 180.02562 * 24 23 22 47 47 H 1.48491 * 110.00295 * 300.00339 * 25 23 22 48 48 H 1.48502 * 109.99735 * 61.32336 * 25 23 22 49 49 H 1.09001 * 109.47481 * 270.00833 * 27 26 22 50 50 H 1.08999 * 109.47356 * 30.00139 * 27 26 22 51 51 H 1.08996 * 109.47351 * 150.00636 * 27 26 22 52 52 H 1.08001 * 120.03489 * 180.02562 * 28 17 16 53 53 H 1.08001 * 119.96123 * 180.02562 * 29 28 17 54 54 H 1.09004 * 113.61035 * 140.02239 * 30 8 7 55 55 H 1.08997 * 113.61997 * 270.92327 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0234 0.6365 -0.7567 7 6 4.1078 2.7142 0.0001 8 6 5.1815 2.2261 0.9869 9 1 5.3978 2.9377 1.7838 10 7 6.3906 1.7177 0.3345 11 6 7.5610 1.7018 1.0026 12 8 7.6133 2.1090 2.1438 13 6 8.8060 1.1845 0.3293 14 6 9.9694 1.2807 1.2824 15 6 10.7452 2.4251 1.3108 16 6 11.8093 2.5180 2.1865 17 6 12.1061 1.4569 3.0310 18 7 13.1893 1.5459 3.9167 19 6 13.1045 1.5597 5.2797 20 6 11.8341 1.4827 6.0868 21 6 14.3540 1.6510 5.7785 22 6 15.2428 1.7052 4.6860 23 6 16.7437 1.8162 4.7627 24 8 17.1408 3.1467 4.4250 25 14 17.3082 1.4200 6.4934 26 6 14.5043 1.6391 3.5598 27 6 15.0376 1.6644 2.1506 28 6 11.3286 0.3073 2.9965 29 6 10.2621 0.2226 2.1229 30 6 4.1929 1.1225 1.3985 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.4174 3.4402 0.4297 35 1 4.5106 3.0310 -0.9619 36 1 6.3487 1.3922 -0.5783 37 1 8.6575 0.1438 0.0411 38 1 9.0135 1.7814 -0.5588 39 1 10.5165 3.2485 0.6504 40 1 12.4124 3.4136 2.2113 41 1 11.5995 0.4390 6.2962 42 1 11.9668 2.0207 7.0254 43 1 11.0173 1.9325 5.5225 44 1 14.6239 1.6817 6.8238 45 1 17.1962 1.1133 4.0630 46 1 18.0966 3.2910 4.4531 47 1 16.6983 2.3712 7.4568 48 1 16.9292 0.0279 6.8450 49 1 15.0904 2.6953 1.8005 50 1 16.0340 1.2228 2.1312 51 1 14.3744 1.0935 1.5007 52 1 11.5570 -0.5196 3.6527 53 1 9.6567 -0.6713 2.0959 54 1 4.6643 0.1537 1.5641 55 1 3.5259 1.4140 2.2098 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_12335864.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:02:50 Heat of formation + Delta-G solvation = -46.112093 kcal Electronic energy + Delta-G solvation = -36414.214780 eV Core-core repulsion = 31577.715065 eV Total energy + Delta-G solvation = -4836.499715 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.192 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.96137 -42.05556 -41.10449 -40.09237 -39.00846 -37.64422 -37.46694 -34.99365 -34.35722 -33.83798 -32.16891 -32.10227 -30.25838 -29.54547 -28.61281 -27.17126 -26.86051 -26.51184 -24.65763 -23.99855 -23.35883 -22.48986 -21.72828 -21.09068 -20.41612 -20.05947 -19.01251 -18.31228 -18.19856 -18.07829 -17.69841 -17.41168 -17.27211 -17.16625 -16.43128 -16.14476 -15.97666 -15.63058 -15.53025 -15.35391 -15.10660 -15.02519 -14.72347 -14.70511 -14.58697 -14.31132 -14.28733 -14.20692 -13.85188 -13.77751 -13.68522 -13.51249 -13.47186 -13.26050 -13.23437 -13.12571 -12.93891 -12.80315 -12.76960 -12.54618 -12.40376 -12.11296 -11.94583 -11.89773 -11.84450 -11.76494 -11.40063 -11.05232 -10.22824 -10.16572 -10.14064 -10.10544 -9.49455 -8.97595 -4.94744 -0.11159 0.23876 1.00711 1.04386 1.39174 1.54652 1.60576 1.71288 1.72134 1.74076 2.04086 2.10073 2.59270 3.22587 3.31148 3.55874 3.62437 3.64355 3.70146 3.74809 3.75240 3.80458 3.90088 3.96170 4.05899 4.09762 4.11976 4.23536 4.23760 4.24992 4.26129 4.31490 4.45007 4.48309 4.50494 4.52005 4.54592 4.56229 4.61552 4.66420 4.66719 4.70104 4.72132 4.81479 4.85874 4.87591 4.89438 4.95377 4.98243 5.01186 5.12623 5.18163 5.25372 5.32586 5.41600 5.51350 5.70671 5.81046 6.02031 6.40796 6.53525 6.63038 7.02882 7.25897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.103 4.103 6 H 0.157 0.843 7 C -0.118 4.118 8 C 0.124 3.876 9 H 0.089 0.911 10 N -0.699 5.699 11 C 0.517 3.483 12 O -0.578 6.578 13 C -0.098 4.098 14 C -0.059 4.059 15 C -0.094 4.094 16 C -0.117 4.117 17 C 0.096 3.904 18 N -0.402 5.402 19 C 0.018 3.982 20 C -0.081 4.081 21 C -0.221 4.221 22 C -0.182 4.182 23 C -0.038 4.038 24 O -0.566 6.566 25 Si 0.786 3.214 26 C 0.043 3.957 27 C -0.075 4.075 28 C -0.116 4.116 29 C -0.093 4.093 30 C -0.129 4.129 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.422 0.578 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.129 0.871 45 H 0.085 0.915 46 H 0.398 0.602 47 H -0.306 1.306 48 H -0.300 1.300 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.067 0.933 52 H 0.127 0.873 53 H 0.151 0.849 54 H 0.093 0.907 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.829 -4.969 -8.309 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.430 6.430 5 C -0.122 4.122 6 H 0.174 0.826 7 C -0.156 4.156 8 C 0.018 3.982 9 H 0.107 0.893 10 N -0.352 5.352 11 C 0.305 3.695 12 O -0.457 6.457 13 C -0.137 4.137 14 C -0.059 4.059 15 C -0.113 4.113 16 C -0.136 4.136 17 C 0.007 3.993 18 N -0.076 5.076 19 C -0.091 4.091 20 C -0.138 4.138 21 C -0.245 4.245 22 C -0.188 4.188 23 C -0.148 4.148 24 O -0.376 6.376 25 Si 0.694 3.306 26 C -0.067 4.067 27 C -0.132 4.132 28 C -0.135 4.135 29 C -0.112 4.112 30 C -0.168 4.168 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.260 0.740 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.147 0.853 45 H 0.102 0.898 46 H 0.249 0.751 47 H -0.235 1.235 48 H -0.228 1.228 49 H 0.095 0.905 50 H 0.111 0.889 51 H 0.086 0.914 52 H 0.145 0.855 53 H 0.169 0.831 54 H 0.112 0.888 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.494 -4.581 -6.989 8.371 hybrid contribution -1.056 0.104 0.007 1.061 sum -1.550 -4.477 -6.983 8.438 Atomic orbital electron populations 1.23516 0.75188 1.05576 1.02375 1.86521 1.24656 1.33271 1.83488 1.24226 0.92874 0.80946 0.70910 1.90676 1.68017 1.37512 1.46763 1.22848 0.85464 1.01551 1.02299 0.82564 1.23271 0.96281 0.94505 1.01566 1.21617 0.84139 0.96048 0.96385 0.89304 1.45540 1.06773 1.64710 1.18213 1.21022 0.85254 0.77182 0.86018 1.90775 1.86406 1.48313 1.20203 1.20804 0.87805 1.06834 0.98251 1.19681 0.95753 0.93623 0.96848 1.21168 0.93675 0.98199 0.98235 1.21204 0.98705 0.97179 0.96491 1.17861 0.90529 0.96145 0.94771 1.41560 1.04716 1.56625 1.04670 1.20698 0.97343 1.08861 0.82240 1.20349 0.91354 1.03441 0.98665 1.20639 0.92423 1.13085 0.98319 1.18970 0.94601 1.12998 0.92202 1.24069 0.91301 0.87602 1.11859 1.86479 1.30158 1.28218 1.92711 0.95018 0.87400 0.75154 0.73024 1.20724 0.81598 1.06804 0.97588 1.20327 1.01712 1.03105 0.88083 1.21217 0.96156 0.96152 0.99955 1.21174 0.95969 0.99826 0.94210 1.23399 0.97599 1.01337 0.94489 0.92306 0.91946 0.85372 0.88808 0.87643 0.74018 0.84170 0.84339 0.83296 0.85908 0.89901 0.89474 0.91950 0.85318 0.89751 0.75125 1.23452 1.22776 0.90502 0.88867 0.91390 0.85544 0.83107 0.88800 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.51 10.57 -51.40 -0.54 -1.05 16 3 C 0.47 1.00 7.49 71.24 0.53 1.53 16 4 O -0.54 -4.85 15.65 21.97 0.34 -4.50 16 5 C -0.10 0.57 4.15 -10.92 -0.05 0.53 16 6 H 0.16 -1.85 8.14 -2.39 -0.02 -1.87 16 7 C -0.12 0.63 7.15 31.12 0.22 0.85 16 8 C 0.12 -0.52 4.29 45.52 0.20 -0.33 16 9 H 0.09 0.12 7.50 -2.39 -0.02 0.10 16 10 N -0.70 5.80 5.26 -440.04 -2.32 3.49 16 11 C 0.52 -1.52 7.82 87.66 0.69 -0.83 16 12 O -0.58 -4.81 15.65 -3.04 -0.05 -4.86 16 13 C -0.10 0.93 5.83 29.10 0.17 1.10 16 14 C -0.06 0.12 4.37 -19.85 -0.09 0.03 16 15 C -0.09 -0.02 9.69 22.25 0.22 0.20 16 16 C -0.12 -0.55 9.72 22.38 0.22 -0.33 16 17 C 0.10 0.66 4.65 38.08 0.18 0.83 16 18 N -0.40 -4.16 2.79 -320.26 -0.89 -5.05 16 19 C 0.02 0.21 6.81 41.04 0.28 0.49 16 20 C -0.08 -0.55 9.95 71.24 0.71 0.16 16 21 C -0.22 -2.99 9.27 22.15 0.21 -2.79 16 22 C -0.18 -2.12 5.39 -19.98 -0.11 -2.22 16 23 C -0.04 -0.19 2.59 71.24 0.18 0.00 16 24 O -0.57 -2.48 12.86 -148.98 -1.92 -4.39 16 25 Si 0.79 2.70 30.84 68.60 2.12 4.81 16 26 C 0.04 0.43 6.81 41.04 0.28 0.71 16 27 C -0.08 -0.27 9.72 71.23 0.69 0.42 16 28 C -0.12 -0.45 9.75 22.38 0.22 -0.23 16 29 C -0.09 0.04 9.69 22.25 0.22 0.25 16 30 C -0.13 0.56 7.45 31.21 0.23 0.79 16 31 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 32 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 33 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 34 H 0.09 -0.09 7.44 -2.38 -0.02 -0.10 16 35 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.42 -6.59 8.70 -92.71 -0.81 -7.40 16 37 H 0.14 -2.16 8.08 -2.38 -0.02 -2.18 16 38 H 0.14 -2.07 8.08 -2.39 -0.02 -2.09 16 39 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 40 H 0.12 0.63 8.06 -2.91 -0.02 0.61 16 41 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.06 0.48 7.83 -2.39 -0.02 0.46 16 44 H 0.13 1.72 6.55 -2.91 -0.02 1.70 16 45 H 0.08 0.02 7.50 -2.39 -0.02 0.01 16 46 H 0.40 -2.74 8.74 -74.06 -0.65 -3.39 16 47 H -0.31 -3.57 7.06 99.48 0.70 -2.87 16 48 H -0.30 -2.93 7.11 99.48 0.71 -2.22 16 49 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.09 0.08 7.50 -2.39 -0.02 0.06 16 51 H 0.07 0.16 7.83 -2.39 -0.02 0.14 16 52 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 53 H 0.15 -0.78 8.06 -2.91 -0.02 -0.80 16 54 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 55 H 0.09 -0.16 8.10 -2.39 -0.02 -0.18 16 Total: 0.00 -33.81 460.30 2.63 -31.18 By element: Atomic # 1 Polarization: -21.44 SS G_CDS: -0.50 Total: -21.94 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.39 Total: 2.32 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -3.21 Total: -1.57 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -2.16 Total: -14.81 kcal Atomic # 14 Polarization: 2.70 SS G_CDS: 2.12 Total: 4.81 kcal Total: -33.81 2.63 -31.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_12335864.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.934 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds