Wall clock time and date at job start Sat Mar 6 2021 16:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00147 * 2 1 4 4 O 1.20825 * 119.99794 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00052 * 179.97438 * 3 2 1 6 6 H 1.08993 * 112.84846 * 311.20469 * 5 3 2 7 7 C 1.53779 * 113.60810 * 82.50995 * 5 3 2 8 8 C 1.53780 * 87.08158 * 139.98098 * 7 5 3 9 9 H 1.08994 * 113.69358 * 220.00751 * 8 7 5 10 10 N 1.46500 * 113.61678 * 89.11013 * 8 7 5 11 11 C 1.34774 * 119.99770 * 107.50307 * 10 8 7 12 12 O 1.21586 * 120.00478 * 0.02562 * 11 10 8 13 13 C 1.47539 * 120.00210 * 180.02562 * 11 10 8 14 14 C 1.40135 * 120.19657 * 180.02562 * 13 11 10 15 15 O 1.35651 * 120.14634 * 359.95468 * 14 13 11 16 16 C 1.42905 * 117.00043 * 180.02562 * 15 14 13 17 17 C 1.38702 * 119.70248 * 180.23240 * 14 13 11 18 18 C 1.38057 * 120.08154 * 359.50995 * 17 14 13 19 19 C 1.38541 * 120.39424 * 0.47063 * 18 17 14 20 20 C 1.50700 * 119.85312 * 179.76402 * 19 18 17 21 21 O 1.42899 * 109.47157 * 245.02102 * 20 19 18 22 22 Si 1.86293 * 109.47000 * 5.02256 * 20 19 18 23 23 C 1.37797 * 120.29629 * 359.78785 * 19 18 17 24 24 C 1.53780 * 113.61194 * 180.02562 * 5 3 2 25 25 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47282 * 300.00223 * 1 2 3 27 27 H 1.08999 * 109.46785 * 59.99882 * 1 2 3 28 28 H 1.08999 * 113.62139 * 25.43143 * 7 5 3 29 29 H 1.09001 * 113.60891 * 254.52666 * 7 5 3 30 30 H 0.96994 * 120.00258 * 287.50823 * 10 8 7 31 31 H 1.09001 * 109.47103 * 300.00345 * 16 15 14 32 32 H 1.09004 * 109.47054 * 59.99849 * 16 15 14 33 33 H 1.09000 * 109.47187 * 179.97438 * 16 15 14 34 34 H 1.07997 * 119.95821 * 179.72842 * 17 14 13 35 35 H 1.08007 * 119.80255 * 180.21741 * 18 17 14 36 36 H 1.09005 * 109.46806 * 125.02165 * 20 19 18 37 37 H 0.96697 * 114.00348 * 180.02562 * 21 20 19 38 38 H 1.48494 * 110.00047 * 299.99785 * 22 20 19 39 39 H 1.48500 * 109.99995 * 61.31969 * 22 20 19 40 40 H 1.08000 * 120.04230 * 179.97438 * 23 19 18 41 41 H 1.09000 * 113.61183 * 105.47567 * 24 5 3 42 42 H 1.08996 * 113.69208 * 334.58278 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0234 0.6364 0.7566 7 6 4.1916 1.1233 -1.3962 8 6 5.1814 2.2266 -0.9866 9 1 5.3978 2.9386 -1.7830 10 7 6.3906 1.7178 -0.3344 11 6 7.5671 1.7309 -0.9918 12 8 7.6251 2.1654 -2.1259 13 6 8.7847 1.2179 -0.3353 14 6 10.0102 1.2301 -1.0148 15 8 10.0827 1.7129 -2.2804 16 6 11.3654 1.6929 -2.9099 17 6 11.1476 0.7408 -0.3896 18 6 11.0731 0.2538 0.9001 19 6 9.8635 0.2405 1.5755 20 6 9.7951 -0.2989 2.9810 21 8 8.9826 -1.4742 3.0012 22 14 11.5119 -0.7206 3.5686 23 6 8.7226 0.7177 0.9677 24 6 4.1078 2.7142 0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.5243 1.4146 -2.2073 29 1 4.6620 0.1540 -1.5611 30 1 6.3444 1.3714 0.5704 31 1 12.0655 2.2918 -2.3274 32 1 11.7261 0.6658 -2.9672 33 1 11.2831 2.1052 -3.9156 34 1 12.0933 0.7442 -0.9110 35 1 11.9622 -0.1228 1.3839 36 1 9.3608 0.4544 3.6385 37 1 8.8936 -1.8759 3.8763 38 1 12.1149 -1.7466 2.6805 39 1 12.3580 0.4997 3.5825 40 1 7.7818 0.7049 1.4979 41 1 4.5106 3.0288 0.9639 42 1 3.4184 3.4416 -0.4273 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_12496546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:03:06 Heat of formation + Delta-G solvation = -121.638589 kcal Electronic energy + Delta-G solvation = -27155.612615 eV Core-core repulsion = 23069.410442 eV Total energy + Delta-G solvation = -4086.202173 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16537 -41.69984 -40.51992 -39.18503 -38.99050 -37.44722 -37.15662 -34.59826 -32.62541 -31.99774 -29.43446 -28.62681 -27.10464 -26.85809 -26.12906 -25.28449 -23.05944 -22.30108 -21.60811 -20.45820 -19.54365 -18.98234 -18.41883 -18.19043 -17.77591 -17.73476 -17.40953 -16.93881 -16.84031 -16.23317 -16.08970 -15.94338 -15.54113 -15.35792 -15.05226 -14.74227 -14.50896 -14.27960 -14.15980 -13.91684 -13.79876 -13.57367 -13.43741 -13.14379 -12.98761 -12.85665 -12.51791 -12.36549 -12.15659 -11.91265 -11.87898 -11.83495 -11.76683 -11.39187 -11.05601 -10.40757 -10.24777 -10.13115 -9.39209 -4.90798 -0.41726 0.09985 1.05941 1.34197 1.62959 1.69246 1.72296 1.93456 1.99906 2.15788 2.54872 3.21380 3.30858 3.33384 3.41604 3.55289 3.66520 3.75158 3.77128 3.93923 4.04290 4.07433 4.19631 4.25515 4.25914 4.26991 4.28665 4.47015 4.47860 4.57867 4.61567 4.62889 4.68233 4.70832 4.78248 4.81421 4.87316 4.93259 4.99084 5.15619 5.33897 5.41785 5.46472 6.17657 6.43765 6.64835 6.97776 7.13965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.469 3.531 4 O -0.538 6.538 5 C -0.104 4.104 6 H 0.153 0.847 7 C -0.129 4.129 8 C 0.123 3.877 9 H 0.095 0.905 10 N -0.696 5.696 11 C 0.564 3.436 12 O -0.558 6.558 13 C -0.191 4.191 14 C 0.172 3.828 15 O -0.308 6.308 16 C 0.011 3.989 17 C -0.214 4.214 18 C -0.065 4.065 19 C -0.134 4.134 20 C -0.067 4.067 21 O -0.562 6.562 22 Si 0.762 3.238 23 C -0.010 4.010 24 C -0.115 4.115 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.415 0.585 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.405 0.595 38 H -0.297 1.297 39 H -0.289 1.289 40 H 0.166 0.834 41 H 0.104 0.896 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -3.862 7.676 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.314 3.686 4 O -0.427 6.427 5 C -0.123 4.123 6 H 0.170 0.830 7 C -0.168 4.168 8 C 0.017 3.983 9 H 0.113 0.887 10 N -0.350 5.350 11 C 0.353 3.647 12 O -0.437 6.437 13 C -0.195 4.195 14 C 0.124 3.876 15 O -0.219 6.219 16 C -0.083 4.083 17 C -0.233 4.233 18 C -0.083 4.083 19 C -0.135 4.135 20 C -0.177 4.177 21 O -0.372 6.372 22 Si 0.669 3.331 23 C -0.028 4.028 24 C -0.153 4.153 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.175 0.825 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.256 0.744 38 H -0.225 1.225 39 H -0.217 1.217 40 H 0.183 0.817 41 H 0.123 0.877 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.443 -3.062 5.916 7.095 hybrid contribution -0.210 0.175 -0.363 0.454 sum 2.232 -2.886 5.553 6.645 Atomic orbital electron populations 1.23520 0.75115 1.05566 1.02437 1.86525 1.24715 1.33212 1.83471 1.24089 0.92611 0.80993 0.70944 1.90672 1.67902 1.37428 1.46718 1.22771 0.85828 1.01526 1.02134 0.82956 1.23364 0.97521 1.01077 0.94859 1.21716 0.83508 0.96365 0.96701 0.88690 1.45396 1.06372 1.64263 1.18923 1.18128 0.83519 0.77796 0.85276 1.90824 1.86192 1.47237 1.19416 1.19448 0.91915 1.11428 0.96675 1.19341 0.93330 0.90521 0.84457 1.86338 1.34457 1.76617 1.24526 1.23456 0.82669 1.03095 0.99104 1.21359 0.98690 1.06260 0.96968 1.21112 0.97593 0.95636 0.93920 1.19522 0.93246 1.03516 0.97196 1.24617 1.07732 0.90896 0.94498 1.86441 1.71654 1.41280 1.37822 0.94338 0.73240 0.78341 0.87176 1.21213 0.99453 0.91191 0.90937 1.23292 0.96023 0.94584 1.01430 0.85420 0.91864 0.92232 0.88771 0.89254 0.74626 0.91056 0.91207 0.86899 0.82547 0.85365 0.87851 0.74400 1.22515 1.21677 0.81681 0.87723 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.06 10.57 -51.40 -0.54 -1.61 16 3 C 0.47 1.79 7.48 71.24 0.53 2.32 16 4 O -0.54 -5.41 15.65 21.97 0.34 -5.06 16 5 C -0.10 0.27 4.14 -11.01 -0.05 0.23 16 6 H 0.15 -1.24 8.14 -2.39 -0.02 -1.26 16 7 C -0.13 0.10 7.43 31.12 0.23 0.33 16 8 C 0.12 0.05 4.33 45.53 0.20 0.25 16 9 H 0.09 0.48 7.46 -2.39 -0.02 0.46 16 10 N -0.70 0.06 5.21 -443.15 -2.31 -2.25 16 11 C 0.56 4.63 7.76 86.70 0.67 5.30 16 12 O -0.56 -9.48 14.76 16.93 0.25 -9.23 16 13 C -0.19 -1.17 5.89 -20.01 -0.12 -1.29 16 14 C 0.17 1.35 6.70 22.84 0.15 1.51 16 15 O -0.31 -3.13 8.57 -68.74 -0.59 -3.72 16 16 C 0.01 0.01 9.81 113.37 1.11 1.12 16 17 C -0.21 -0.77 9.03 22.34 0.20 -0.57 16 18 C -0.06 -0.18 8.65 22.30 0.19 0.01 16 19 C -0.13 -0.12 5.38 -19.90 -0.11 -0.23 16 20 C -0.07 0.35 2.78 71.24 0.20 0.55 16 21 O -0.56 3.00 12.81 -148.98 -1.91 1.09 16 22 Si 0.76 -3.89 29.84 68.60 2.05 -1.85 16 23 C -0.01 0.00 9.16 22.52 0.21 0.20 16 24 C -0.12 0.28 7.15 31.13 0.22 0.51 16 25 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.09 0.03 8.09 -2.39 -0.02 0.01 16 29 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.42 -2.82 6.73 -92.71 -0.62 -3.44 16 31 H 0.07 -0.17 7.67 -2.39 -0.02 -0.19 16 32 H 0.07 -0.14 7.65 -2.38 -0.02 -0.16 16 33 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.16 -0.16 6.30 -2.91 -0.02 -0.18 16 35 H 0.13 0.17 4.84 -2.91 -0.01 0.15 16 36 H 0.10 -1.07 7.96 -2.38 -0.02 -1.09 16 37 H 0.40 -6.21 8.74 -74.06 -0.65 -6.86 16 38 H -0.30 -0.78 7.04 99.48 0.70 -0.08 16 39 H -0.29 -0.19 7.11 99.48 0.71 0.51 16 40 H 0.17 -1.10 6.40 -2.91 -0.02 -1.12 16 41 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.10 0.07 7.44 -2.39 -0.02 0.05 16 Total: 0.00 -28.17 354.06 1.98 -26.19 By element: Atomic # 1 Polarization: -14.81 SS G_CDS: -0.16 Total: -14.98 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.85 Total: 11.40 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -2.31 Total: -2.25 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -2.45 Total: -18.52 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.05 Total: -1.85 kcal Total: -28.17 1.98 -26.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_12496546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.450 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds