Wall clock time and date at job start Sat Mar 6 2021 16:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00122 * 2 1 4 4 O 1.20828 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00284 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84508 * 311.19109 * 5 3 2 7 7 C 1.53772 * 113.69297 * 82.46065 * 5 3 2 8 8 C 1.53784 * 87.08315 * 139.99588 * 7 5 3 9 9 H 1.09004 * 113.68960 * 220.01588 * 8 7 5 10 10 N 1.46498 * 113.61387 * 89.11820 * 8 7 5 11 11 C 1.34774 * 120.00180 * 107.50778 * 10 8 7 12 12 O 1.21579 * 119.99780 * 359.97438 * 11 10 8 13 13 C 1.47651 * 120.00315 * 179.97438 * 11 10 8 14 14 C 1.40172 * 119.96772 * 0.02562 * 13 11 10 15 15 C 1.36359 * 120.66682 * 180.02562 * 14 13 11 16 16 C 1.39334 * 120.23594 * 359.97205 * 15 14 13 17 17 N 1.37396 * 133.25021 * 180.02562 * 16 15 14 18 18 C 1.36872 * 109.97926 * 180.02562 * 17 16 15 19 19 C 1.34186 * 109.96749 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.54257 * 180.02562 * 19 18 17 21 21 O 1.42905 * 109.47181 * 104.99908 * 20 19 18 22 22 Si 1.86302 * 109.46958 * 345.00303 * 20 19 18 23 23 C 1.40912 * 119.64128 * 0.02562 * 16 15 14 24 24 C 1.39185 * 119.97555 * 179.78025 * 13 11 10 25 25 C 1.53779 * 87.07788 * 334.56583 * 8 7 5 26 26 H 1.09006 * 109.47366 * 300.00161 * 1 2 3 27 27 H 1.09000 * 109.46973 * 60.00046 * 1 2 3 28 28 H 1.08996 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08997 * 113.61652 * 25.44795 * 7 5 3 30 30 H 1.08996 * 113.61832 * 254.54278 * 7 5 3 31 31 H 0.97001 * 119.99476 * 287.49985 * 10 8 7 32 32 H 1.07996 * 119.67069 * 0.03623 * 14 13 11 33 33 H 1.07998 * 119.88102 * 179.97438 * 15 14 13 34 34 H 0.96993 * 125.01282 * 359.96032 * 17 16 15 35 35 H 1.08002 * 125.01374 * 180.02562 * 18 17 16 36 36 H 1.08991 * 109.47183 * 225.00150 * 20 19 18 37 37 H 0.96698 * 113.99663 * 300.00405 * 21 20 19 38 38 H 1.48495 * 109.99907 * 180.02562 * 22 20 19 39 39 H 1.48497 * 109.99714 * 301.31841 * 22 20 19 40 40 H 1.07991 * 120.30502 * 359.89759 * 24 13 11 41 41 H 1.09004 * 113.61545 * 139.98145 * 25 8 7 42 42 H 1.09002 * 113.61919 * 270.88290 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1925 1.1230 -1.3968 8 6 5.1821 2.2264 -0.9868 9 1 5.3989 2.9383 -1.7833 10 7 6.3908 1.7177 -0.3338 11 6 7.5677 1.7307 -0.9903 12 8 7.6262 2.1642 -2.1247 13 6 8.7860 1.2185 -0.3320 14 6 8.7177 0.7183 0.9757 15 6 9.8340 0.2423 1.5975 16 6 11.0609 0.2469 0.9371 17 7 12.3244 -0.1567 1.2953 18 6 13.1969 0.0679 0.2649 19 6 12.5470 0.6120 -0.7754 20 6 13.1465 1.0083 -2.1001 21 8 12.7759 0.0524 -3.0957 22 14 15.0028 1.0612 -1.9506 23 6 11.1427 0.7471 -0.3778 24 6 10.0003 1.2279 -1.0121 25 6 4.1077 2.7142 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5257 1.4141 -2.2084 30 1 4.6630 0.1537 -1.5613 31 1 6.3439 1.3716 0.5712 32 1 7.7714 0.7097 1.4960 33 1 9.7669 -0.1398 2.6054 34 1 12.5632 -0.5428 2.1525 35 1 14.2523 -0.1601 0.2858 36 1 12.7768 1.9928 -2.3862 37 1 13.0728 -0.8481 -2.9061 38 1 15.6060 1.4515 -3.2502 39 1 15.3999 2.0284 -0.8960 40 1 10.0565 1.6072 -2.0217 41 1 4.5098 3.0295 0.9623 42 1 3.4177 3.4403 -0.4304 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_13287722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:03:43 Heat of formation + Delta-G solvation = -57.899652 kcal Electronic energy + Delta-G solvation = -27202.903367 eV Core-core repulsion = 23116.269121 eV Total energy + Delta-G solvation = -4086.634245 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52267 -41.95917 -40.81223 -39.23047 -37.88483 -37.41029 -37.25248 -34.35520 -33.28332 -30.91370 -30.51617 -29.33222 -27.05164 -26.89398 -26.49134 -24.79929 -23.52070 -22.48315 -21.72056 -20.82006 -20.40196 -19.39024 -18.90869 -18.32313 -17.78659 -17.48404 -17.35185 -17.27490 -16.84731 -16.24793 -15.97130 -15.87940 -15.56812 -15.20631 -15.14535 -14.90322 -14.76941 -14.71495 -14.21678 -14.05510 -13.84431 -13.74170 -13.60533 -13.46462 -13.12864 -12.83245 -12.59962 -12.29574 -12.20574 -11.89737 -11.87220 -11.78130 -11.76301 -11.28768 -10.88251 -10.81236 -10.33188 -10.11625 -9.35716 -8.85740 -5.09245 -0.08011 0.15587 1.17749 1.29746 1.45160 1.64188 1.72507 1.94601 1.95273 1.99384 2.06639 2.92614 3.19166 3.28613 3.54120 3.56322 3.63906 3.69869 3.73303 3.78130 3.82377 3.98068 4.04847 4.17290 4.25029 4.33289 4.39631 4.43796 4.47025 4.54589 4.57833 4.61653 4.69037 4.74541 4.79340 4.82663 4.95713 4.99345 5.21982 5.34070 5.40546 5.45351 5.54033 5.57661 5.95087 6.33241 6.48826 6.68556 6.75227 7.27468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.504 6.504 5 C -0.113 4.113 6 H 0.125 0.875 7 C -0.132 4.132 8 C 0.123 3.877 9 H 0.115 0.885 10 N -0.713 5.713 11 C 0.569 3.431 12 O -0.533 6.533 13 C -0.169 4.169 14 C -0.066 4.066 15 C -0.134 4.134 16 C 0.119 3.881 17 N -0.585 5.585 18 C 0.061 3.939 19 C -0.192 4.192 20 C -0.034 4.034 21 O -0.539 6.539 22 Si 0.687 3.313 23 C -0.103 4.103 24 C 0.009 3.991 25 C -0.125 4.125 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.400 0.600 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.421 0.579 35 H 0.179 0.821 36 H 0.113 0.887 37 H 0.377 0.623 38 H -0.254 1.254 39 H -0.256 1.256 40 H 0.139 0.861 41 H 0.086 0.914 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -5.758 6.184 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.391 6.391 5 C -0.132 4.132 6 H 0.142 0.858 7 C -0.171 4.171 8 C 0.018 3.982 9 H 0.133 0.867 10 N -0.366 5.366 11 C 0.358 3.642 12 O -0.410 6.410 13 C -0.174 4.174 14 C -0.086 4.086 15 C -0.154 4.154 16 C 0.010 3.990 17 N -0.187 5.187 18 C -0.065 4.065 19 C -0.199 4.199 20 C -0.146 4.146 21 O -0.344 6.344 22 Si 0.588 3.412 23 C -0.108 4.108 24 C -0.011 4.011 25 C -0.163 4.163 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.236 0.764 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.259 0.741 35 H 0.196 0.804 36 H 0.130 0.870 37 H 0.224 0.776 38 H -0.178 1.178 39 H -0.181 1.181 40 H 0.157 0.843 41 H 0.104 0.896 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.567 -4.170 5.126 7.509 hybrid contribution -0.835 -0.136 1.148 1.426 sum 2.732 -4.306 6.273 8.084 Atomic orbital electron populations 1.23321 0.75988 1.03986 1.02714 1.86520 1.23703 1.33389 1.83809 1.23580 0.91685 0.81411 0.72085 1.90688 1.66977 1.36428 1.45024 1.22659 0.87575 1.01073 1.01909 0.85760 1.23404 0.97842 1.01344 0.94496 1.21774 0.83510 0.96340 0.96606 0.86684 1.45565 1.07361 1.65094 1.18532 1.18181 0.82868 0.77689 0.85505 1.90809 1.85886 1.46250 1.18026 1.19496 0.93652 1.08491 0.95739 1.20576 0.97905 0.96714 0.93444 1.19669 0.89603 1.05637 1.00516 1.18439 0.86293 0.99396 0.94828 1.41739 1.06112 1.54844 1.16039 1.21688 0.95634 1.01710 0.87458 1.20765 0.92418 1.09387 0.97320 1.24410 1.10026 0.94787 0.85351 1.86541 1.81684 1.20895 1.45301 0.95342 0.75044 0.89312 0.81456 1.18930 0.93499 1.04824 0.93541 1.20704 0.89078 0.92117 0.99169 1.23374 0.97046 0.94763 1.01096 0.91765 0.91732 0.87872 0.88290 0.89342 0.76376 0.85424 0.85411 0.74090 0.80435 0.86995 0.77648 1.17841 1.18097 0.84345 0.89577 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.54 10.57 -39.25 -0.41 -0.95 16 3 C 0.47 0.84 7.49 36.00 0.27 1.11 16 4 O -0.50 -2.34 15.65 -18.75 -0.29 -2.63 16 5 C -0.11 0.13 4.13 -90.96 -0.38 -0.24 16 6 H 0.12 -0.41 8.14 -51.93 -0.42 -0.83 16 7 C -0.13 0.11 7.43 -25.92 -0.19 -0.08 16 8 C 0.12 -0.04 4.32 -67.12 -0.29 -0.33 16 9 H 0.12 0.15 7.46 -51.93 -0.39 -0.23 16 10 N -0.71 0.40 5.21 -54.02 -0.28 0.12 16 11 C 0.57 1.61 7.76 -12.42 -0.10 1.51 16 12 O -0.53 -3.63 15.93 5.30 0.08 -3.54 16 13 C -0.17 -0.30 5.87 -104.98 -0.62 -0.92 16 14 C -0.07 0.06 9.46 -39.53 -0.37 -0.31 16 15 C -0.13 0.15 10.00 -39.85 -0.40 -0.25 16 16 C 0.12 0.01 7.27 -83.95 -0.61 -0.60 16 17 N -0.59 1.43 6.05 -10.61 -0.06 1.37 16 18 C 0.06 -0.15 10.43 -16.73 -0.17 -0.32 16 19 C -0.19 -0.04 5.58 -102.69 -0.57 -0.61 16 20 C -0.03 0.00 3.06 36.01 0.11 0.11 16 21 O -0.54 -0.50 12.88 -35.23 -0.45 -0.95 16 22 Si 0.69 -1.18 30.76 -169.99 -5.23 -6.40 16 23 C -0.10 -0.20 6.34 -105.15 -0.67 -0.87 16 24 C 0.01 0.03 9.64 -38.86 -0.37 -0.35 16 25 C -0.12 0.16 7.15 -25.92 -0.19 -0.03 16 26 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 27 H 0.06 -0.02 8.13 -51.93 -0.42 -0.44 16 28 H 0.10 -0.28 8.14 -51.93 -0.42 -0.71 16 29 H 0.10 -0.06 8.10 -51.93 -0.42 -0.48 16 30 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.40 -1.36 6.70 -40.82 -0.27 -1.63 16 32 H 0.13 -0.52 6.36 -52.49 -0.33 -0.85 16 33 H 0.13 -0.46 8.06 -52.49 -0.42 -0.88 16 34 H 0.42 -2.32 8.96 -40.82 -0.37 -2.68 16 35 H 0.18 -1.07 6.35 -52.49 -0.33 -1.41 16 36 H 0.11 0.15 7.96 -51.93 -0.41 -0.27 16 37 H 0.38 -1.24 8.70 45.56 0.40 -0.85 16 38 H -0.25 -0.51 7.11 56.52 0.40 -0.10 16 39 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 40 H 0.14 0.59 7.64 -52.49 -0.40 0.19 16 41 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 42 H 0.11 -0.01 7.44 -51.93 -0.39 -0.40 16 LS Contribution 360.33 15.07 5.43 5.43 Total: 0.00 -11.84 360.33 -9.78 -21.62 By element: Atomic # 1 Polarization: -7.84 SS G_CDS: -5.07 Total: -12.91 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.48 Total: -1.14 kcal Atomic # 7 Polarization: 1.83 SS G_CDS: -0.35 Total: 1.49 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.08 Total: -8.08 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: -5.23 Total: -6.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -11.84 -9.78 -21.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13287722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.281 kcal (2) G-P(sol) polarization free energy of solvation -11.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds