Wall clock time and date at job start Sat Mar 6 2021 16:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00122 * 2 1 4 4 O 1.20828 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00284 * 180.02562 * 3 2 1 6 6 H 1.09003 * 112.84508 * 311.19109 * 5 3 2 7 7 C 1.53772 * 113.69297 * 82.46065 * 5 3 2 8 8 C 1.53784 * 87.08315 * 139.99588 * 7 5 3 9 9 H 1.09004 * 113.68960 * 220.01588 * 8 7 5 10 10 N 1.46498 * 113.61387 * 89.11820 * 8 7 5 11 11 C 1.34774 * 120.00180 * 107.50778 * 10 8 7 12 12 O 1.21579 * 119.99780 * 359.97438 * 11 10 8 13 13 C 1.47651 * 120.00315 * 179.97438 * 11 10 8 14 14 C 1.40172 * 119.96772 * 0.02562 * 13 11 10 15 15 C 1.36359 * 120.66682 * 180.02562 * 14 13 11 16 16 C 1.39334 * 120.23594 * 359.97205 * 15 14 13 17 17 N 1.37396 * 133.25021 * 180.02562 * 16 15 14 18 18 C 1.36872 * 109.97926 * 180.02562 * 17 16 15 19 19 C 1.34186 * 109.96749 * 359.97438 * 18 17 16 20 20 C 1.50702 * 126.54257 * 180.02562 * 19 18 17 21 21 O 1.42905 * 109.47181 * 104.99908 * 20 19 18 22 22 Si 1.86302 * 109.46958 * 345.00303 * 20 19 18 23 23 C 1.40912 * 119.64128 * 0.02562 * 16 15 14 24 24 C 1.39185 * 119.97555 * 179.78025 * 13 11 10 25 25 C 1.53779 * 87.07788 * 334.56583 * 8 7 5 26 26 H 1.09006 * 109.47366 * 300.00161 * 1 2 3 27 27 H 1.09000 * 109.46973 * 60.00046 * 1 2 3 28 28 H 1.08996 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.08997 * 113.61652 * 25.44795 * 7 5 3 30 30 H 1.08996 * 113.61832 * 254.54278 * 7 5 3 31 31 H 0.97001 * 119.99476 * 287.49985 * 10 8 7 32 32 H 1.07996 * 119.67069 * 0.03623 * 14 13 11 33 33 H 1.07998 * 119.88102 * 179.97438 * 15 14 13 34 34 H 0.96993 * 125.01282 * 359.96032 * 17 16 15 35 35 H 1.08002 * 125.01374 * 180.02562 * 18 17 16 36 36 H 1.08991 * 109.47183 * 225.00150 * 20 19 18 37 37 H 0.96698 * 113.99663 * 300.00405 * 21 20 19 38 38 H 1.48495 * 109.99907 * 180.02562 * 22 20 19 39 39 H 1.48497 * 109.99714 * 301.31841 * 22 20 19 40 40 H 1.07991 * 120.30502 * 359.89759 * 24 13 11 41 41 H 1.09004 * 113.61545 * 139.98145 * 25 8 7 42 42 H 1.09002 * 113.61919 * 270.88290 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0239 0.6362 0.7550 7 6 4.1925 1.1230 -1.3968 8 6 5.1821 2.2264 -0.9868 9 1 5.3989 2.9383 -1.7833 10 7 6.3908 1.7177 -0.3338 11 6 7.5677 1.7307 -0.9903 12 8 7.6262 2.1642 -2.1247 13 6 8.7860 1.2185 -0.3320 14 6 8.7177 0.7183 0.9757 15 6 9.8340 0.2423 1.5975 16 6 11.0609 0.2469 0.9371 17 7 12.3244 -0.1567 1.2953 18 6 13.1969 0.0679 0.2649 19 6 12.5470 0.6120 -0.7754 20 6 13.1465 1.0083 -2.1001 21 8 12.7759 0.0524 -3.0957 22 14 15.0028 1.0612 -1.9506 23 6 11.1427 0.7471 -0.3778 24 6 10.0003 1.2279 -1.0121 25 6 4.1077 2.7142 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5257 1.4141 -2.2084 30 1 4.6630 0.1537 -1.5613 31 1 6.3439 1.3716 0.5712 32 1 7.7714 0.7097 1.4960 33 1 9.7669 -0.1398 2.6054 34 1 12.5632 -0.5428 2.1525 35 1 14.2523 -0.1601 0.2858 36 1 12.7768 1.9928 -2.3862 37 1 13.0728 -0.8481 -2.9061 38 1 15.6060 1.4515 -3.2502 39 1 15.3999 2.0284 -0.8960 40 1 10.0565 1.6072 -2.0217 41 1 4.5098 3.0295 0.9623 42 1 3.4177 3.4403 -0.4304 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_13287722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:03:42 Heat of formation + Delta-G solvation = -61.282640 kcal Electronic energy + Delta-G solvation = -27203.050064 eV Core-core repulsion = 23116.269121 eV Total energy + Delta-G solvation = -4086.780943 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45396 -42.03327 -40.95666 -39.29801 -37.91290 -37.48424 -37.35686 -34.48133 -33.23811 -30.90242 -30.47550 -29.33831 -27.05325 -26.85554 -26.45646 -24.84275 -23.45432 -22.55319 -21.77992 -20.78129 -20.43722 -19.36660 -18.93977 -18.36787 -17.87400 -17.48596 -17.42598 -17.26485 -16.86102 -16.25744 -16.04881 -15.94747 -15.54699 -15.20103 -15.12780 -14.90048 -14.80474 -14.73596 -14.29174 -14.07028 -13.77017 -13.75922 -13.58862 -13.47480 -13.14286 -12.86773 -12.59821 -12.35625 -12.18114 -11.91926 -11.88159 -11.83767 -11.76875 -11.39698 -11.13402 -10.78240 -10.31754 -10.22922 -9.31218 -8.78692 -5.00508 -0.15144 0.22502 1.05644 1.36376 1.54701 1.71306 1.71867 1.81993 1.98858 2.04565 2.15375 2.88544 3.21537 3.31319 3.61064 3.63663 3.67757 3.73187 3.76416 3.88224 3.94510 4.05076 4.16527 4.25587 4.27998 4.39061 4.45729 4.48041 4.55068 4.61216 4.62311 4.67883 4.71005 4.78744 4.81757 4.87741 4.98025 5.02073 5.28601 5.33534 5.35592 5.45142 5.52572 5.59851 6.00524 6.46961 6.62564 6.64471 6.88858 7.15567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.469 3.531 4 O -0.538 6.538 5 C -0.103 4.103 6 H 0.156 0.844 7 C -0.129 4.129 8 C 0.120 3.880 9 H 0.092 0.908 10 N -0.692 5.692 11 C 0.565 3.435 12 O -0.586 6.586 13 C -0.178 4.178 14 C -0.066 4.066 15 C -0.125 4.125 16 C 0.111 3.889 17 N -0.572 5.572 18 C 0.087 3.913 19 C -0.227 4.227 20 C -0.053 4.053 21 O -0.565 6.565 22 Si 0.811 3.189 23 C -0.131 4.131 24 C -0.024 4.024 25 C -0.116 4.116 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.418 0.582 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.439 0.561 35 H 0.220 0.780 36 H 0.083 0.917 37 H 0.393 0.607 38 H -0.309 1.309 39 H -0.280 1.280 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -7.760 9.488 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.313 3.687 4 O -0.428 6.428 5 C -0.122 4.122 6 H 0.173 0.827 7 C -0.168 4.168 8 C 0.014 3.986 9 H 0.110 0.890 10 N -0.345 5.345 11 C 0.355 3.645 12 O -0.467 6.467 13 C -0.183 4.183 14 C -0.086 4.086 15 C -0.145 4.145 16 C 0.001 3.999 17 N -0.175 5.175 18 C -0.041 4.041 19 C -0.234 4.234 20 C -0.162 4.162 21 O -0.373 6.373 22 Si 0.716 3.284 23 C -0.135 4.135 24 C -0.044 4.044 25 C -0.154 4.154 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.146 0.854 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.257 0.743 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.281 0.719 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.243 0.757 38 H -0.237 1.237 39 H -0.206 1.206 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.395 -6.233 8.506 11.425 hybrid contribution -1.145 0.490 0.075 1.247 sum 3.250 -5.744 8.581 10.825 Atomic orbital electron populations 1.23523 0.75134 1.05592 1.02411 1.86521 1.24698 1.33207 1.83477 1.24115 0.92664 0.80982 0.70931 1.90675 1.67936 1.37468 1.46727 1.22776 0.85742 1.01466 1.02178 0.82659 1.23360 0.97455 1.01132 0.94845 1.21717 0.83728 0.96426 0.96696 0.89003 1.45363 1.06233 1.63928 1.18970 1.18485 0.84000 0.77063 0.84973 1.90779 1.86699 1.48820 1.20419 1.19529 0.92476 1.09171 0.97080 1.20902 0.99788 0.95854 0.92047 1.20089 0.88683 1.04103 1.01650 1.18649 0.87754 0.99337 0.94125 1.41785 1.05106 1.53884 1.16742 1.22232 0.97024 0.98740 0.86088 1.20847 0.92253 1.12037 0.98275 1.24740 1.12494 0.93499 0.85441 1.86489 1.82395 1.22262 1.46125 0.94063 0.70376 0.86909 0.77068 1.19225 0.93977 1.05372 0.94958 1.20595 0.90883 0.94469 0.98419 1.23288 0.96016 0.94659 1.01442 0.91906 0.92260 0.85359 0.88949 0.89002 0.74287 0.81895 0.81968 0.71911 0.76379 0.89936 0.75684 1.23715 1.20648 0.87779 0.87666 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.96 10.57 -51.38 -0.54 -1.50 16 3 C 0.47 1.68 7.49 71.24 0.53 2.21 16 4 O -0.54 -5.43 15.65 21.96 0.34 -5.09 16 5 C -0.10 0.32 4.13 -11.02 -0.05 0.28 16 6 H 0.16 -1.44 8.14 -2.39 -0.02 -1.46 16 7 C -0.13 0.14 7.43 31.12 0.23 0.37 16 8 C 0.12 0.04 4.32 45.52 0.20 0.24 16 9 H 0.09 0.51 7.46 -2.39 -0.02 0.49 16 10 N -0.69 0.60 5.21 -443.09 -2.31 -1.71 16 11 C 0.56 4.42 7.76 86.73 0.67 5.09 16 12 O -0.59 -10.39 15.93 -3.96 -0.06 -10.46 16 13 C -0.18 -0.93 5.87 -20.09 -0.12 -1.05 16 14 C -0.07 0.21 9.46 22.30 0.21 0.42 16 15 C -0.13 0.56 10.00 22.10 0.22 0.78 16 16 C 0.11 -0.09 7.27 39.19 0.28 0.19 16 17 N -0.57 4.14 6.05 -187.47 -1.13 3.00 16 18 C 0.09 -0.57 10.43 82.98 0.87 0.29 16 19 C -0.23 -0.28 5.58 -18.61 -0.10 -0.38 16 20 C -0.05 -0.13 3.06 71.24 0.22 0.09 16 21 O -0.56 -2.40 12.88 -148.98 -1.92 -4.32 16 22 Si 0.81 -2.73 30.76 68.60 2.11 -0.62 16 23 C -0.13 -0.73 6.34 -20.21 -0.13 -0.85 16 24 C -0.02 -0.23 9.64 22.74 0.22 -0.01 16 25 C -0.12 0.30 7.15 31.12 0.22 0.52 16 26 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 27 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H 0.09 0.03 8.10 -2.39 -0.02 0.01 16 30 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.42 -3.54 6.70 -92.71 -0.62 -4.16 16 32 H 0.16 -1.83 6.36 -2.91 -0.02 -1.85 16 33 H 0.16 -1.85 8.06 -2.91 -0.02 -1.88 16 34 H 0.44 -6.35 8.96 -92.71 -0.83 -7.18 16 35 H 0.22 -3.43 6.35 -2.91 -0.02 -3.45 16 36 H 0.08 0.58 7.96 -2.39 -0.02 0.56 16 37 H 0.39 -2.12 8.70 -74.06 -0.64 -2.77 16 38 H -0.31 -1.74 7.11 99.48 0.71 -1.03 16 39 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 40 H 0.10 1.56 7.64 -2.91 -0.02 1.54 16 41 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.10 0.09 7.44 -2.39 -0.02 0.07 16 Total: 0.00 -33.84 360.33 0.21 -33.63 By element: Atomic # 1 Polarization: -21.33 SS G_CDS: -0.96 Total: -22.29 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 4.68 Total: 9.35 kcal Atomic # 7 Polarization: 4.74 SS G_CDS: -3.44 Total: 1.30 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -2.18 Total: -21.37 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.11 Total: -0.62 kcal Total: -33.84 0.21 -33.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13287722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.649 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds