Wall clock time and date at job start Sat Mar 6 2021 16:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34227 * 117.00499 * 2 1 4 4 O 1.20833 * 119.99547 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00654 * 179.97438 * 3 2 1 6 6 H 1.09001 * 112.84471 * 48.80314 * 5 3 2 7 7 C 1.53773 * 113.61925 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.08455 * 140.06522 * 7 5 3 9 9 H 1.09000 * 113.61289 * 219.93781 * 8 7 5 10 10 N 1.46502 * 113.61486 * 89.11612 * 8 7 5 11 11 C 1.34774 * 119.99884 * 155.00101 * 10 8 7 12 12 O 1.21513 * 120.00239 * 359.97438 * 11 10 8 13 13 C 1.48172 * 119.99625 * 179.97438 * 11 10 8 14 14 N 1.32718 * 119.72668 * 359.97438 * 13 11 10 15 15 C 1.31515 * 121.64155 * 180.02562 * 14 13 11 16 16 C 1.38556 * 120.90641 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.32394 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.47469 * 120.02068 * 17 16 15 19 19 Si 1.86295 * 109.47249 * 0.02562 * 17 16 15 20 20 C 1.38623 * 119.35381 * 359.97438 * 16 15 14 21 21 C 1.38595 * 118.48634 * 0.02562 * 20 16 15 22 22 C 1.53781 * 113.69133 * 277.54133 * 5 3 2 23 23 H 1.09005 * 109.47314 * 60.00150 * 1 2 3 24 24 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47358 * 300.00197 * 1 2 3 26 26 H 1.09006 * 113.61370 * 25.50859 * 7 5 3 27 27 H 1.08998 * 113.61386 * 254.61686 * 7 5 3 28 28 H 0.97003 * 119.99950 * 335.00086 * 10 8 7 29 29 H 1.08001 * 119.54644 * 179.97438 * 15 14 13 30 30 H 1.09003 * 109.46810 * 240.01705 * 17 16 15 31 31 H 0.96701 * 113.99619 * 299.99750 * 18 17 16 32 32 H 1.48506 * 110.00175 * 180.02562 * 19 17 16 33 33 H 1.48499 * 110.00277 * 301.32192 * 19 17 16 34 34 H 1.07998 * 120.76123 * 179.97438 * 20 16 15 35 35 H 1.08000 * 120.46738 * 179.72634 * 21 20 16 36 36 H 1.08991 * 113.62140 * 105.45510 * 22 5 3 37 37 H 1.09004 * 113.60966 * 334.54809 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0238 0.6361 -0.7550 7 6 4.1078 2.7141 0.0011 8 6 5.1821 2.2260 0.9873 9 1 5.3989 2.9374 1.7840 10 7 6.3908 1.7175 0.3340 11 6 7.5677 1.7302 0.9906 12 8 7.6264 2.1638 2.1242 13 6 8.7900 1.2153 0.3300 14 7 8.7196 0.7425 -0.9081 15 6 9.7804 0.2761 -1.5299 16 6 11.0194 0.2608 -0.9099 17 6 12.2262 -0.2772 -1.6345 18 8 13.2134 0.7502 -1.7441 19 14 11.7269 -0.8427 -3.3379 20 6 11.1381 0.7453 0.3835 21 6 10.0034 1.2307 1.0142 22 6 4.1925 1.1229 1.3969 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 3.4177 3.4401 0.4312 27 1 4.5098 3.0297 -0.9616 28 1 6.3440 1.3717 -0.5711 29 1 9.6843 -0.1010 -2.5374 30 1 12.6384 -1.1192 -1.0783 31 1 12.9150 1.5322 -2.2284 32 1 12.9082 -1.3761 -4.0626 33 1 10.6776 -1.8887 -3.2386 34 1 12.0927 0.7439 0.8885 35 1 10.0584 1.6117 2.0233 36 1 4.6630 0.1536 1.5614 37 1 3.5256 1.4141 2.2085 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_13287726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:03:44 Heat of formation + Delta-G solvation = -80.308439 kcal Electronic energy + Delta-G solvation = -22618.480176 eV Core-core repulsion = 18942.864112 eV Total energy + Delta-G solvation = -3675.616063 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.17125 -41.71249 -40.57830 -39.14206 -37.84720 -37.45517 -34.69454 -33.51467 -32.94004 -29.50493 -28.05292 -26.86400 -26.73257 -25.00705 -24.03605 -22.57764 -22.04325 -20.45443 -19.49247 -18.73551 -18.54870 -17.89636 -17.67463 -17.42596 -16.80646 -16.63359 -16.44746 -16.22981 -15.93498 -15.55321 -15.11368 -14.90065 -14.57142 -14.35183 -14.28153 -14.19840 -13.70038 -13.52937 -13.46903 -13.14827 -12.86576 -12.53128 -12.16041 -11.89729 -11.84694 -11.78317 -11.49173 -11.39930 -11.05401 -10.68972 -10.58552 -10.34417 -10.10917 -4.98590 -0.59764 0.08921 1.05666 1.26481 1.51210 1.65119 1.71762 1.86090 1.99740 2.66282 2.92536 3.21567 3.30892 3.44069 3.52484 3.61315 3.68710 3.75967 3.80843 3.96541 4.05570 4.13729 4.25458 4.28138 4.42697 4.46999 4.58778 4.62146 4.66655 4.68539 4.77226 4.86812 4.90292 4.97697 5.01214 5.33569 5.37919 5.43102 6.24565 6.60364 6.64562 6.73010 7.01497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.537 6.537 5 C -0.107 4.107 6 H 0.149 0.851 7 C -0.116 4.116 8 C 0.119 3.881 9 H 0.103 0.897 10 N -0.682 5.682 11 C 0.574 3.426 12 O -0.563 6.563 13 C 0.064 3.936 14 N -0.457 5.457 15 C 0.101 3.899 16 C -0.142 4.142 17 C -0.070 4.070 18 O -0.551 6.551 19 Si 0.775 3.225 20 C -0.054 4.054 21 C -0.115 4.115 22 C -0.127 4.127 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.422 0.578 29 H 0.187 0.813 30 H 0.119 0.881 31 H 0.398 0.602 32 H -0.298 1.298 33 H -0.276 1.276 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -1.799 -4.620 5.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.427 6.427 5 C -0.125 4.125 6 H 0.167 0.833 7 C -0.154 4.154 8 C 0.014 3.986 9 H 0.121 0.879 10 N -0.333 5.333 11 C 0.360 3.640 12 O -0.441 6.441 13 C -0.073 4.073 14 N -0.168 5.168 15 C -0.058 4.058 16 C -0.144 4.144 17 C -0.180 4.180 18 O -0.359 6.359 19 Si 0.680 3.320 20 C -0.080 4.080 21 C -0.136 4.136 22 C -0.166 4.166 23 H 0.081 0.919 24 H 0.145 0.855 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.261 0.739 29 H 0.204 0.796 30 H 0.136 0.864 31 H 0.248 0.752 32 H -0.226 1.226 33 H -0.203 1.203 34 H 0.177 0.823 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.270 -2.266 -4.427 4.981 hybrid contribution 0.503 -0.292 0.818 1.003 sum 0.774 -2.558 -3.610 4.491 Atomic orbital electron populations 1.23521 0.75113 1.05551 1.02460 1.86521 1.24721 1.33256 1.83483 1.24081 0.92594 0.80986 0.70951 1.90673 1.67891 1.37397 1.46702 1.22775 0.85844 1.01626 1.02296 0.83348 1.23286 0.96079 0.94559 1.01437 1.21802 0.83477 0.96559 0.96775 0.87923 1.45420 1.06231 1.62419 1.19219 1.18061 0.83347 0.77697 0.84868 1.90804 1.86144 1.47954 1.19153 1.21019 0.93786 1.00531 0.91961 1.67496 1.32961 1.08456 1.07862 1.23011 0.87061 0.95457 1.00289 1.21765 0.97175 0.99435 0.96023 1.25170 0.88515 0.94284 1.10061 1.86511 1.38781 1.30614 1.80025 0.93769 0.77905 0.84912 0.75427 1.21716 0.99206 0.93314 0.93727 1.22281 0.91980 0.97416 1.01891 1.23355 0.97447 1.01022 0.94761 0.91940 0.85458 0.92112 0.87820 0.88001 0.73907 0.79623 0.86391 0.75215 1.22604 1.20282 0.82328 0.83354 0.89177 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -1.00 10.56 -51.39 -0.54 -1.55 16 3 C 0.47 1.67 7.49 71.23 0.53 2.20 16 4 O -0.54 -5.21 15.65 21.94 0.34 -4.87 16 5 C -0.11 0.30 4.13 -11.02 -0.05 0.25 16 6 H 0.15 -1.08 8.14 -2.39 -0.02 -1.10 16 7 C -0.12 0.35 7.15 31.12 0.22 0.57 16 8 C 0.12 -0.14 4.32 45.50 0.20 0.05 16 9 H 0.10 0.21 7.46 -2.39 -0.02 0.19 16 10 N -0.68 0.64 5.25 -442.66 -2.32 -1.69 16 11 C 0.57 2.67 7.81 86.88 0.68 3.35 16 12 O -0.56 -6.41 15.92 -3.76 -0.06 -6.47 16 13 C 0.06 0.14 6.75 41.91 0.28 0.42 16 14 N -0.46 0.32 9.54 -184.92 -1.76 -1.45 16 15 C 0.10 -0.44 9.84 84.82 0.83 0.39 16 16 C -0.14 0.63 5.40 -19.70 -0.11 0.52 16 17 C -0.07 0.41 2.83 71.24 0.20 0.61 16 18 O -0.55 2.60 12.78 -148.98 -1.90 0.69 16 19 Si 0.77 -5.53 29.82 68.60 2.05 -3.48 16 20 C -0.05 0.14 9.76 22.45 0.22 0.36 16 21 C -0.11 -0.10 9.63 22.61 0.22 0.12 16 22 C -0.13 0.28 7.43 31.11 0.23 0.51 16 23 H 0.06 -0.04 8.13 -2.38 -0.02 -0.06 16 24 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 25 H 0.06 -0.02 8.13 -2.38 -0.02 -0.04 16 26 H 0.10 -0.03 7.44 -2.38 -0.02 -0.05 16 27 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.42 -2.00 8.03 -92.71 -0.74 -2.75 16 29 H 0.19 -1.81 4.89 -2.91 -0.01 -1.82 16 30 H 0.12 -0.61 7.96 -2.39 -0.02 -0.63 16 31 H 0.40 -4.98 8.70 -74.06 -0.64 -5.63 16 32 H -0.30 -0.38 7.11 99.48 0.71 0.33 16 33 H -0.28 0.83 7.11 99.48 0.71 1.54 16 34 H 0.16 -0.82 8.06 -2.91 -0.02 -0.84 16 35 H 0.15 0.18 7.64 -2.91 -0.02 0.15 16 36 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.10 -0.15 8.10 -2.39 -0.02 -0.17 16 Total: 0.00 -21.03 323.97 0.23 -20.80 By element: Atomic # 1 Polarization: -12.30 SS G_CDS: -0.22 Total: -12.53 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 4.66 Total: 10.54 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -4.09 Total: -3.13 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -2.16 Total: -12.19 kcal Atomic # 14 Polarization: -5.53 SS G_CDS: 2.05 Total: -3.48 kcal Total: -21.03 0.23 -20.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13287726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.510 kcal (2) G-P(sol) polarization free energy of solvation -21.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds