Wall clock time and date at job start Sat Mar 6 2021 16:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99969 * 2 1 4 4 O 1.20829 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99733 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.85106 * 311.19384 * 5 3 2 7 7 C 1.53781 * 113.61511 * 82.50138 * 5 3 2 8 8 C 1.53781 * 87.08282 * 139.97892 * 7 5 3 9 9 H 1.09006 * 113.69317 * 220.01121 * 8 7 5 10 10 N 1.46500 * 113.61556 * 89.11799 * 8 7 5 11 11 C 1.34771 * 120.00435 * 107.50399 * 10 8 7 12 12 O 1.21283 * 119.99788 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00260 * 180.02562 * 11 10 8 14 14 C 1.50703 * 109.47129 * 180.02562 * 13 11 10 15 15 C 1.38272 * 119.93513 * 89.99936 * 14 13 11 16 16 C 1.38124 * 120.06543 * 180.02562 * 15 14 13 17 17 C 1.38827 * 119.93573 * 359.97438 * 16 15 14 18 18 N 1.40199 * 120.06594 * 179.97438 * 17 16 15 19 19 C 1.36568 * 125.66889 * 310.02632 * 18 17 16 20 20 C 1.34849 * 108.19442 * 179.97438 * 19 18 17 21 21 C 1.40937 * 107.47475 * 359.78711 * 20 19 18 22 22 C 1.34854 * 107.46474 * 0.35393 * 21 20 19 23 23 C 1.50696 * 125.90002 * 179.90660 * 22 21 20 24 24 O 1.42903 * 109.47131 * 149.68726 * 23 22 21 25 25 Si 1.86305 * 109.47185 * 29.69267 * 23 22 21 26 26 C 1.38830 * 119.86594 * 0.25926 * 17 16 15 27 27 C 1.38128 * 119.93127 * 359.46556 * 26 17 16 28 28 C 1.53783 * 87.08246 * 334.56622 * 8 7 5 29 29 H 1.08999 * 109.47365 * 300.00349 * 1 2 3 30 30 H 1.09000 * 109.47241 * 60.00600 * 1 2 3 31 31 H 1.09004 * 109.47452 * 180.02562 * 1 2 3 32 32 H 1.09006 * 113.61641 * 25.43282 * 7 5 3 33 33 H 1.08999 * 113.61348 * 254.52689 * 7 5 3 34 34 H 0.97006 * 119.99498 * 287.50200 * 10 8 7 35 35 H 1.08996 * 109.47356 * 59.99965 * 13 11 10 36 36 H 1.09005 * 109.46856 * 299.99956 * 13 11 10 37 37 H 1.07999 * 119.96976 * 359.97438 * 15 14 13 38 38 H 1.08001 * 120.02962 * 179.97438 * 16 15 14 39 39 H 1.07997 * 125.89821 * 359.95853 * 19 18 17 40 40 H 1.08007 * 126.26310 * 180.02562 * 20 19 18 41 41 H 1.07992 * 126.26994 * 180.22420 * 21 20 19 42 42 H 1.08999 * 109.47358 * 269.69086 * 23 22 21 43 43 H 0.96700 * 114.00311 * 300.00591 * 24 23 22 44 44 H 1.48499 * 109.99670 * 58.67633 * 25 23 22 45 45 H 1.48497 * 110.00233 * 179.97438 * 25 23 22 46 46 H 1.07993 * 120.03272 * 179.74467 * 26 17 16 47 47 H 1.07999 * 119.96167 * 180.27941 * 27 26 17 48 48 H 1.08997 * 113.61565 * 139.97921 * 28 8 7 49 49 H 1.08998 * 113.61671 * 270.88830 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0232 0.6365 0.7567 7 6 4.1916 1.1231 -1.3961 8 6 5.1814 2.2265 -0.9866 9 1 5.3978 2.9385 -1.7832 10 7 6.3905 1.7177 -0.3344 11 6 7.5671 1.7308 -0.9916 12 8 7.6250 2.1641 -2.1228 13 6 8.8107 1.2069 -0.3208 14 6 9.9807 1.3339 -1.2622 15 6 10.7447 2.4864 -1.2618 16 6 11.8172 2.6059 -2.1239 17 6 12.1283 1.5672 -2.9909 18 7 13.2160 1.6858 -3.8674 19 6 13.4586 2.7431 -4.6970 20 6 14.5938 2.4908 -5.3797 21 6 15.0734 1.2357 -4.9544 22 6 14.2094 0.7633 -4.0330 23 6 14.3237 -0.5522 -3.3070 24 8 13.7350 -0.4334 -2.0103 25 14 16.1209 -1.0116 -3.1332 26 6 11.3564 0.4132 -2.9923 27 6 10.2885 0.2973 -2.1240 28 6 4.1077 2.7142 0.0004 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5243 1.4143 -2.2073 33 1 4.6621 0.1538 -1.5609 34 1 6.3443 1.3715 0.5706 35 1 8.6677 0.1589 -0.0578 36 1 9.0072 1.7846 0.5824 37 1 10.5020 3.2943 -0.5874 38 1 12.4133 3.5065 -2.1234 39 1 12.8468 3.6281 -4.7904 40 1 15.0537 3.1348 -6.1148 41 1 15.9678 0.7416 -5.3039 42 1 13.8040 -1.3257 -3.8724 43 1 14.1483 0.2383 -1.4507 44 1 16.8470 0.0504 -2.3915 45 1 16.2472 -2.3069 -2.4182 46 1 11.5934 -0.3947 -3.6685 47 1 9.6905 -0.6020 -2.1215 48 1 4.5104 3.0293 0.9630 49 1 3.4174 3.4403 -0.4289 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_13287746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:03:53 Heat of formation + Delta-G solvation = -35.234194 kcal Electronic energy + Delta-G solvation = -32494.242529 eV Core-core repulsion = 27969.289753 eV Total energy + Delta-G solvation = -4524.952776 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.62670 -42.05965 -41.05472 -39.96877 -38.95811 -37.78548 -37.35558 -34.83306 -34.38122 -32.10543 -31.78706 -30.96218 -29.51184 -28.05560 -26.99038 -26.73347 -26.00519 -23.93653 -23.58373 -22.49598 -21.77549 -21.27230 -20.58748 -20.47561 -19.24854 -19.00783 -18.18441 -17.72427 -17.54646 -17.36990 -17.23356 -16.97303 -16.46354 -16.27029 -15.84980 -15.78524 -15.54508 -15.22311 -15.07665 -14.86720 -14.64562 -14.46905 -14.33766 -14.24940 -14.10183 -13.88308 -13.79317 -13.57010 -13.28188 -13.23353 -13.10613 -13.05761 -12.89489 -12.59930 -12.30317 -12.07566 -11.97248 -11.87055 -11.84092 -11.81806 -11.35906 -11.00897 -10.85500 -10.24620 -10.21885 -9.91286 -9.07955 -8.93973 -4.90821 0.04165 0.41773 1.10384 1.11536 1.47339 1.54101 1.66914 1.68659 1.88503 1.95878 2.08530 2.19606 2.74780 3.10605 3.19576 3.26150 3.51479 3.53765 3.64405 3.70872 3.74847 3.83060 3.91657 3.93232 4.09910 4.12849 4.20687 4.20782 4.27925 4.35057 4.39627 4.49318 4.49657 4.53129 4.55808 4.60273 4.63212 4.67600 4.68723 4.72493 4.84613 4.89189 4.99371 5.24496 5.26695 5.33667 5.35050 5.39146 5.45623 5.52406 5.81288 6.01028 6.25567 6.33072 6.39529 6.59131 6.69266 7.12584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.504 6.504 5 C -0.112 4.112 6 H 0.125 0.875 7 C -0.132 4.132 8 C 0.122 3.878 9 H 0.114 0.886 10 N -0.717 5.717 11 C 0.518 3.482 12 O -0.523 6.523 13 C -0.103 4.103 14 C -0.065 4.065 15 C -0.092 4.092 16 C -0.120 4.120 17 C 0.126 3.874 18 N -0.391 5.391 19 C -0.006 4.006 20 C -0.190 4.190 21 C -0.184 4.184 22 C -0.016 4.016 23 C -0.050 4.050 24 O -0.526 6.526 25 Si 0.710 3.290 26 C -0.083 4.083 27 C -0.089 4.089 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.403 0.597 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.374 0.626 44 H -0.259 1.259 45 H -0.256 1.256 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.086 0.914 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -2.443 2.723 3.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.391 6.391 5 C -0.132 4.132 6 H 0.143 0.857 7 C -0.171 4.171 8 C 0.016 3.984 9 H 0.132 0.868 10 N -0.370 5.370 11 C 0.304 3.696 12 O -0.397 6.397 13 C -0.142 4.142 14 C -0.066 4.066 15 C -0.110 4.110 16 C -0.139 4.139 17 C 0.036 3.964 18 N -0.064 5.064 19 C -0.133 4.133 20 C -0.214 4.214 21 C -0.209 4.209 22 C -0.125 4.125 23 C -0.160 4.160 24 O -0.332 6.332 25 Si 0.609 3.391 26 C -0.102 4.102 27 C -0.107 4.107 28 C -0.163 4.163 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.237 0.763 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.181 0.819 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.135 0.865 43 H 0.221 0.779 44 H -0.183 1.183 45 H -0.181 1.181 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.104 0.896 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.079 -2.503 2.414 3.479 hybrid contribution -0.970 0.568 1.322 1.736 sum -0.892 -1.935 3.737 4.301 Atomic orbital electron populations 1.23328 0.75916 1.04030 1.02739 1.86518 1.23764 1.33358 1.83795 1.23573 0.91689 0.81437 0.72127 1.90691 1.66970 1.36431 1.44989 1.22653 0.87643 1.01053 1.01809 0.85708 1.23395 0.97883 1.01219 0.94569 1.21780 0.83638 0.96325 0.96608 0.86843 1.45713 1.07476 1.65169 1.18625 1.20605 0.84221 0.78246 0.86514 1.90773 1.85723 1.45033 1.18182 1.20683 0.90672 1.04172 0.98709 1.19254 0.95515 0.94536 0.97246 1.20782 0.94475 0.97032 0.98756 1.20969 0.98908 0.98587 0.95461 1.17671 0.89252 0.96450 0.93067 1.41435 1.17886 1.16240 1.30869 1.22021 1.00859 0.93684 0.96764 1.20942 0.97596 0.98431 1.04394 1.20681 1.01367 0.97494 1.01320 1.20985 0.92226 0.94621 1.04664 1.24774 1.12259 0.94831 0.84117 1.86612 1.59562 1.62095 1.24905 0.94546 0.74040 0.80060 0.90408 1.20852 0.93725 0.96658 0.98943 1.20804 0.96591 0.98601 0.94723 1.23367 0.97048 0.94798 1.01051 0.91730 0.91720 0.87834 0.88346 0.89447 0.76279 0.87472 0.87506 0.85465 0.85487 0.81910 0.83968 0.83416 0.86513 0.77883 1.18334 1.18122 0.85701 0.85538 0.89561 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.38 10.57 -39.26 -0.41 -0.80 16 3 C 0.47 0.60 7.48 36.00 0.27 0.87 16 4 O -0.50 -2.12 15.65 -18.75 -0.29 -2.41 16 5 C -0.11 0.22 4.14 -90.96 -0.38 -0.16 16 6 H 0.13 -0.51 8.14 -51.93 -0.42 -0.93 16 7 C -0.13 0.23 7.43 -25.92 -0.19 0.04 16 8 C 0.12 -0.20 4.32 -67.12 -0.29 -0.49 16 9 H 0.11 0.03 7.46 -51.93 -0.39 -0.35 16 10 N -0.72 1.95 5.26 -53.01 -0.28 1.67 16 11 C 0.52 -0.08 7.82 -10.99 -0.09 -0.17 16 12 O -0.52 -2.37 15.63 5.55 0.09 -2.28 16 13 C -0.10 0.26 5.83 -29.03 -0.17 0.09 16 14 C -0.06 -0.02 4.37 -104.60 -0.46 -0.48 16 15 C -0.09 -0.06 9.69 -39.61 -0.38 -0.44 16 16 C -0.12 -0.17 9.66 -39.41 -0.38 -0.55 16 17 C 0.13 0.30 4.89 -83.59 -0.41 -0.11 16 18 N -0.39 -1.02 2.87 -56.74 -0.16 -1.18 16 19 C -0.01 -0.01 11.12 -16.64 -0.19 -0.20 16 20 C -0.19 -0.34 10.86 -39.76 -0.43 -0.77 16 21 C -0.18 -0.25 9.42 -39.76 -0.37 -0.63 16 22 C -0.02 -0.03 6.02 -81.68 -0.49 -0.52 16 23 C -0.05 -0.02 2.28 36.00 0.08 0.06 16 24 O -0.53 -0.69 9.86 -35.23 -0.35 -1.04 16 25 Si 0.71 -0.39 31.13 -169.99 -5.29 -5.68 16 26 C -0.08 -0.18 7.67 -39.40 -0.30 -0.48 16 27 C -0.09 -0.10 9.69 -39.61 -0.38 -0.48 16 28 C -0.12 0.26 7.15 -25.91 -0.19 0.08 16 29 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 30 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 31 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 32 H 0.10 -0.12 8.09 -51.93 -0.42 -0.54 16 33 H 0.09 -0.16 8.14 -51.93 -0.42 -0.59 16 34 H 0.40 -2.27 8.70 -40.82 -0.36 -2.62 16 35 H 0.11 -0.49 8.08 -51.93 -0.42 -0.91 16 36 H 0.11 -0.50 8.08 -51.93 -0.42 -0.92 16 37 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 38 H 0.13 0.06 8.06 -52.49 -0.42 -0.36 16 39 H 0.16 0.10 8.06 -52.49 -0.42 -0.33 16 40 H 0.14 0.02 8.06 -52.48 -0.42 -0.41 16 41 H 0.15 -0.18 6.88 -52.49 -0.36 -0.54 16 42 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 43 H 0.37 -0.06 8.70 45.56 0.40 0.34 16 44 H -0.26 -0.57 7.11 56.52 0.40 -0.17 16 45 H -0.26 -0.57 7.11 56.52 0.40 -0.17 16 46 H 0.13 0.27 7.67 -52.49 -0.40 -0.14 16 47 H 0.13 -0.05 8.06 -52.49 -0.42 -0.48 16 48 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 49 H 0.11 -0.08 7.43 -51.93 -0.39 -0.47 16 LS Contribution 413.81 15.07 6.24 6.24 Total: 0.00 -10.62 413.81 -11.17 -21.78 By element: Atomic # 1 Polarization: -5.98 SS G_CDS: -7.02 Total: -12.99 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -3.68 Total: -3.30 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -0.44 Total: 0.49 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.97 Total: -6.53 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.29 Total: -5.68 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -10.62 -11.17 -21.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13287746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.452 kcal (2) G-P(sol) polarization free energy of solvation -10.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds