Wall clock time and date at job start Sat Mar 6 2021 16:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99969 * 2 1 4 4 O 1.20829 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99733 * 179.97438 * 3 2 1 6 6 H 1.08994 * 112.85106 * 311.19384 * 5 3 2 7 7 C 1.53781 * 113.61511 * 82.50138 * 5 3 2 8 8 C 1.53781 * 87.08282 * 139.97892 * 7 5 3 9 9 H 1.09006 * 113.69317 * 220.01121 * 8 7 5 10 10 N 1.46500 * 113.61556 * 89.11799 * 8 7 5 11 11 C 1.34771 * 120.00435 * 107.50399 * 10 8 7 12 12 O 1.21283 * 119.99788 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00260 * 180.02562 * 11 10 8 14 14 C 1.50703 * 109.47129 * 180.02562 * 13 11 10 15 15 C 1.38272 * 119.93513 * 89.99936 * 14 13 11 16 16 C 1.38124 * 120.06543 * 180.02562 * 15 14 13 17 17 C 1.38827 * 119.93573 * 359.97438 * 16 15 14 18 18 N 1.40199 * 120.06594 * 179.97438 * 17 16 15 19 19 C 1.36568 * 125.66889 * 310.02632 * 18 17 16 20 20 C 1.34849 * 108.19442 * 179.97438 * 19 18 17 21 21 C 1.40937 * 107.47475 * 359.78711 * 20 19 18 22 22 C 1.34854 * 107.46474 * 0.35393 * 21 20 19 23 23 C 1.50696 * 125.90002 * 179.90660 * 22 21 20 24 24 O 1.42903 * 109.47131 * 149.68726 * 23 22 21 25 25 Si 1.86305 * 109.47185 * 29.69267 * 23 22 21 26 26 C 1.38830 * 119.86594 * 0.25926 * 17 16 15 27 27 C 1.38128 * 119.93127 * 359.46556 * 26 17 16 28 28 C 1.53783 * 87.08246 * 334.56622 * 8 7 5 29 29 H 1.08999 * 109.47365 * 300.00349 * 1 2 3 30 30 H 1.09000 * 109.47241 * 60.00600 * 1 2 3 31 31 H 1.09004 * 109.47452 * 180.02562 * 1 2 3 32 32 H 1.09006 * 113.61641 * 25.43282 * 7 5 3 33 33 H 1.08999 * 113.61348 * 254.52689 * 7 5 3 34 34 H 0.97006 * 119.99498 * 287.50200 * 10 8 7 35 35 H 1.08996 * 109.47356 * 59.99965 * 13 11 10 36 36 H 1.09005 * 109.46856 * 299.99956 * 13 11 10 37 37 H 1.07999 * 119.96976 * 359.97438 * 15 14 13 38 38 H 1.08001 * 120.02962 * 179.97438 * 16 15 14 39 39 H 1.07997 * 125.89821 * 359.95853 * 19 18 17 40 40 H 1.08007 * 126.26310 * 180.02562 * 20 19 18 41 41 H 1.07992 * 126.26994 * 180.22420 * 21 20 19 42 42 H 1.08999 * 109.47358 * 269.69086 * 23 22 21 43 43 H 0.96700 * 114.00311 * 300.00591 * 24 23 22 44 44 H 1.48499 * 109.99670 * 58.67633 * 25 23 22 45 45 H 1.48497 * 110.00233 * 179.97438 * 25 23 22 46 46 H 1.07993 * 120.03272 * 179.74467 * 26 17 16 47 47 H 1.07999 * 119.96167 * 180.27941 * 27 26 17 48 48 H 1.08997 * 113.61565 * 139.97921 * 28 8 7 49 49 H 1.08998 * 113.61671 * 270.88830 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0232 0.6365 0.7567 7 6 4.1916 1.1231 -1.3961 8 6 5.1814 2.2265 -0.9866 9 1 5.3978 2.9385 -1.7832 10 7 6.3905 1.7177 -0.3344 11 6 7.5671 1.7308 -0.9916 12 8 7.6250 2.1641 -2.1228 13 6 8.8107 1.2069 -0.3208 14 6 9.9807 1.3339 -1.2622 15 6 10.7447 2.4864 -1.2618 16 6 11.8172 2.6059 -2.1239 17 6 12.1283 1.5672 -2.9909 18 7 13.2160 1.6858 -3.8674 19 6 13.4586 2.7431 -4.6970 20 6 14.5938 2.4908 -5.3797 21 6 15.0734 1.2357 -4.9544 22 6 14.2094 0.7633 -4.0330 23 6 14.3237 -0.5522 -3.3070 24 8 13.7350 -0.4334 -2.0103 25 14 16.1209 -1.0116 -3.1332 26 6 11.3564 0.4132 -2.9923 27 6 10.2885 0.2973 -2.1240 28 6 4.1077 2.7142 0.0004 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.5243 1.4143 -2.2073 33 1 4.6621 0.1538 -1.5609 34 1 6.3443 1.3715 0.5706 35 1 8.6677 0.1589 -0.0578 36 1 9.0072 1.7846 0.5824 37 1 10.5020 3.2943 -0.5874 38 1 12.4133 3.5065 -2.1234 39 1 12.8468 3.6281 -4.7904 40 1 15.0537 3.1348 -6.1148 41 1 15.9678 0.7416 -5.3039 42 1 13.8040 -1.3257 -3.8724 43 1 14.1483 0.2383 -1.4507 44 1 16.8470 0.0504 -2.3915 45 1 16.2472 -2.3069 -2.4182 46 1 11.5934 -0.3947 -3.6685 47 1 9.6905 -0.6020 -2.1215 48 1 4.5104 3.0293 0.9630 49 1 3.4174 3.4403 -0.4289 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_13287746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:03:52 Heat of formation + Delta-G solvation = -32.913359 kcal Electronic energy + Delta-G solvation = -32494.141890 eV Core-core repulsion = 27969.289753 eV Total energy + Delta-G solvation = -4524.852137 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.70205 -42.06051 -41.06659 -39.96392 -38.96249 -37.85025 -37.47066 -34.85358 -34.33327 -32.15059 -31.76528 -31.03493 -29.48272 -28.02793 -26.86078 -26.66175 -26.06477 -23.98185 -23.60480 -22.50309 -21.71443 -21.35076 -20.64625 -20.40966 -19.31874 -19.01094 -18.18938 -17.71061 -17.58732 -17.40158 -17.19344 -16.98462 -16.45140 -16.25367 -15.87215 -15.81559 -15.47215 -15.29343 -15.07008 -14.87022 -14.64951 -14.49974 -14.35248 -14.27418 -14.15926 -13.95800 -13.75308 -13.49239 -13.29049 -13.23847 -13.12885 -12.95006 -12.85396 -12.56686 -12.39873 -12.09596 -11.93532 -11.89618 -11.83769 -11.76978 -11.40203 -11.05341 -10.90789 -10.30051 -10.13574 -9.97053 -9.15089 -9.03885 -4.89533 -0.00782 0.36166 1.04219 1.06700 1.41446 1.60703 1.66363 1.71143 1.83837 1.99867 2.07068 2.13699 2.72554 3.22122 3.24187 3.31866 3.62463 3.65370 3.67240 3.75078 3.77079 3.88808 3.98131 4.05799 4.13594 4.23330 4.23852 4.26158 4.32971 4.48197 4.48878 4.53003 4.56144 4.61495 4.64125 4.66442 4.67233 4.71248 4.80169 4.85736 4.88154 4.97230 5.01041 5.19272 5.22297 5.27960 5.32384 5.38095 5.50795 5.51478 5.80238 5.94115 6.19499 6.36021 6.49700 6.53651 6.62862 7.25891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.103 4.103 6 H 0.156 0.844 7 C -0.129 4.129 8 C 0.124 3.876 9 H 0.090 0.910 10 N -0.700 5.700 11 C 0.518 3.482 12 O -0.577 6.577 13 C -0.097 4.097 14 C -0.068 4.068 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.111 3.889 18 N -0.398 5.398 19 C -0.025 4.025 20 C -0.199 4.199 21 C -0.193 4.193 22 C -0.028 4.028 23 C -0.059 4.059 24 O -0.536 6.536 25 Si 0.801 3.199 26 C -0.096 4.096 27 C -0.098 4.098 28 C -0.118 4.118 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.421 0.579 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.171 0.829 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.124 0.876 43 H 0.378 0.622 44 H -0.295 1.295 45 H -0.293 1.293 46 H 0.118 0.882 47 H 0.140 0.860 48 H 0.104 0.896 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -3.361 4.081 5.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.122 4.122 6 H 0.173 0.827 7 C -0.168 4.168 8 C 0.018 3.982 9 H 0.108 0.892 10 N -0.353 5.353 11 C 0.306 3.694 12 O -0.456 6.456 13 C -0.136 4.136 14 C -0.068 4.068 15 C -0.116 4.116 16 C -0.149 4.149 17 C 0.021 3.979 18 N -0.072 5.072 19 C -0.153 4.153 20 C -0.223 4.223 21 C -0.217 4.217 22 C -0.137 4.137 23 C -0.167 4.167 24 O -0.343 6.343 25 Si 0.705 3.295 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.156 4.156 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.259 0.741 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.188 0.812 40 H 0.174 0.826 41 H 0.189 0.811 42 H 0.142 0.858 43 H 0.226 0.774 44 H -0.222 1.222 45 H -0.220 1.220 46 H 0.136 0.864 47 H 0.157 0.843 48 H 0.123 0.877 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.195 -3.442 3.797 5.129 hybrid contribution -1.088 0.855 0.925 1.664 sum -0.893 -2.587 4.722 5.458 Atomic orbital electron populations 1.23519 0.75165 1.05593 1.02389 1.86520 1.24682 1.33271 1.83486 1.24207 0.92835 0.80950 0.70906 1.90676 1.67996 1.37502 1.46765 1.22797 0.85527 1.01589 1.02307 0.82663 1.23355 0.97608 1.01328 0.94547 1.21629 0.84087 0.96088 0.96416 0.89166 1.45548 1.06407 1.64147 1.19201 1.21018 0.85250 0.77312 0.85851 1.90764 1.86527 1.47650 1.20633 1.20764 0.88057 1.06251 0.98518 1.19576 0.96107 0.93909 0.97250 1.21080 0.94101 0.97726 0.98718 1.21117 0.99486 0.98567 0.95733 1.17826 0.89579 0.96919 0.93575 1.41580 1.18121 1.16468 1.30993 1.22308 1.01513 0.94204 0.97233 1.21238 0.97558 0.98930 1.04590 1.21063 1.02088 0.97476 1.01090 1.21298 0.92285 0.95066 1.05039 1.25040 1.13351 0.94494 0.83798 1.86591 1.60129 1.62274 1.25290 0.93479 0.71513 0.75962 0.88594 1.20908 0.94502 0.96612 0.99535 1.21056 0.96392 0.99541 0.94658 1.23283 0.96294 0.94497 1.01547 0.91956 0.92261 0.85358 0.89416 0.88854 0.74094 0.84772 0.84629 0.83723 0.85193 0.81219 0.82641 0.81084 0.85828 0.77408 1.22219 1.22011 0.86400 0.84267 0.87733 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.68 10.57 -51.41 -0.54 -1.22 16 3 C 0.47 1.23 7.48 71.23 0.53 1.76 16 4 O -0.54 -5.05 15.65 21.96 0.34 -4.70 16 5 C -0.10 0.50 4.14 -11.01 -0.05 0.46 16 6 H 0.16 -1.70 8.14 -2.39 -0.02 -1.72 16 7 C -0.13 0.47 7.43 31.12 0.23 0.70 16 8 C 0.12 -0.41 4.32 45.52 0.20 -0.22 16 9 H 0.09 0.18 7.46 -2.38 -0.02 0.17 16 10 N -0.70 4.88 5.26 -440.03 -2.32 2.56 16 11 C 0.52 -0.67 7.82 87.66 0.69 0.01 16 12 O -0.58 -5.59 15.63 -3.04 -0.05 -5.64 16 13 C -0.10 0.70 5.83 29.10 0.17 0.86 16 14 C -0.07 -0.01 4.37 -19.85 -0.09 -0.10 16 15 C -0.10 -0.11 9.69 22.25 0.22 0.10 16 16 C -0.13 -0.50 9.66 22.38 0.22 -0.28 16 17 C 0.11 0.67 4.89 38.08 0.19 0.86 16 18 N -0.40 -2.57 2.87 -333.41 -0.96 -3.53 16 19 C -0.03 -0.14 11.12 83.18 0.93 0.78 16 20 C -0.20 -0.83 10.86 22.15 0.24 -0.59 16 21 C -0.19 -0.56 9.42 22.15 0.21 -0.35 16 22 C -0.03 -0.12 6.02 41.04 0.25 0.13 16 23 C -0.06 -0.08 2.28 71.23 0.16 0.09 16 24 O -0.54 -1.82 9.86 -148.98 -1.47 -3.29 16 25 Si 0.80 -0.74 31.13 68.60 2.14 1.40 16 26 C -0.10 -0.53 7.67 22.39 0.17 -0.36 16 27 C -0.10 -0.24 9.69 22.25 0.22 -0.03 16 28 C -0.12 0.55 7.15 31.12 0.22 0.77 16 29 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 30 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 31 H 0.13 -0.90 8.14 -2.38 -0.02 -0.92 16 32 H 0.09 -0.12 8.09 -2.38 -0.02 -0.14 16 33 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.42 -5.98 8.70 -92.70 -0.81 -6.78 16 35 H 0.13 -1.65 8.08 -2.39 -0.02 -1.67 16 36 H 0.14 -1.72 8.08 -2.38 -0.02 -1.74 16 37 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 38 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 39 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 40 H 0.16 0.07 8.06 -2.91 -0.02 0.04 16 41 H 0.17 -0.54 6.88 -2.91 -0.02 -0.56 16 42 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 43 H 0.38 0.26 8.70 -74.06 -0.64 -0.38 16 44 H -0.30 -1.52 7.11 99.48 0.71 -0.81 16 45 H -0.29 -1.49 7.11 99.48 0.71 -0.78 16 46 H 0.12 0.70 7.67 -2.91 -0.02 0.67 16 47 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 48 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 49 H 0.09 -0.04 7.43 -2.39 -0.02 -0.06 16 Total: 0.00 -27.44 413.81 2.61 -24.82 By element: Atomic # 1 Polarization: -15.74 SS G_CDS: -0.43 Total: -16.16 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.89 Total: 5.76 kcal Atomic # 7 Polarization: 2.31 SS G_CDS: -3.27 Total: -0.97 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.72 Total: -14.85 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.14 Total: 1.40 kcal Total: -27.44 2.61 -24.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13287746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.091 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds