Wall clock time and date at job start Sat Mar 6 2021 16:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00369 * 2 1 4 4 O 1.20822 * 119.99583 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00053 * 179.97438 * 3 2 1 6 6 H 1.08993 * 112.91004 * 311.24954 * 5 3 2 7 7 C 1.53962 * 113.66521 * 82.55365 * 5 3 2 8 8 C 1.53782 * 87.11063 * 139.88647 * 7 5 3 9 9 H 1.09001 * 113.61250 * 220.08565 * 8 7 5 10 10 N 1.46501 * 113.61142 * 89.18830 * 8 7 5 11 11 C 1.34769 * 120.00014 * 107.50467 * 10 8 7 12 12 O 1.21600 * 120.00327 * 359.97438 * 11 10 8 13 13 C 1.47555 * 120.00109 * 179.97438 * 11 10 8 14 14 C 1.39835 * 120.00182 * 359.71866 * 13 11 10 15 15 C 1.36562 * 119.99943 * 179.68923 * 14 13 11 16 16 C 1.39819 * 119.99956 * 0.59238 * 15 14 13 17 17 C 1.47569 * 119.99767 * 179.68929 * 16 15 14 18 18 C 1.34977 * 125.27423 * 0.02562 * 17 16 15 19 19 C 1.37801 * 114.70069 * 179.97438 * 18 17 16 20 20 C 1.33750 * 115.07630 * 0.02562 * 19 18 17 21 21 C 1.50704 * 125.11204 * 180.02562 * 20 19 18 22 22 O 1.42904 * 109.47050 * 299.99355 * 21 20 19 23 23 Si 1.86300 * 109.46515 * 179.97438 * 21 20 19 24 24 S 1.75850 * 109.76515 * 359.75454 * 20 19 18 25 25 C 1.39824 * 120.00713 * 359.70815 * 16 15 14 26 26 C 1.36566 * 119.99646 * 359.97438 * 25 16 15 27 27 C 1.53781 * 87.08260 * 334.63747 * 8 7 5 28 28 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47107 * 300.00189 * 1 2 3 30 30 H 1.09006 * 109.46965 * 60.00398 * 1 2 3 31 31 H 1.08997 * 113.53543 * 25.33321 * 7 5 3 32 32 H 1.08998 * 113.73879 * 254.46919 * 7 5 3 33 33 H 0.97001 * 119.99973 * 287.49325 * 10 8 7 34 34 H 1.08002 * 119.99712 * 0.02562 * 14 13 11 35 35 H 1.07993 * 119.99992 * 180.29531 * 15 14 13 36 36 H 1.07992 * 122.65309 * 359.95424 * 18 17 16 37 37 H 1.07994 * 122.46314 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47393 * 59.99884 * 21 20 19 39 39 H 0.96704 * 113.99893 * 300.00330 * 22 21 20 40 40 H 1.48509 * 109.99731 * 179.97438 * 23 21 20 41 41 H 1.48498 * 110.00184 * 301.31671 * 23 21 20 42 42 H 1.07991 * 120.00478 * 180.02562 * 25 16 15 43 43 H 1.07995 * 120.00229 * 179.97438 * 26 25 16 44 44 H 1.09002 * 113.61445 * 139.98212 * 27 8 7 45 45 H 1.09002 * 113.61408 * 270.79943 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0244 0.6361 0.7557 7 6 4.1936 1.1243 -1.3974 8 6 5.1817 2.2291 -0.9876 9 1 5.3955 2.9413 -1.7846 10 7 6.3921 1.7218 -0.3364 11 6 7.5682 1.7374 -0.9943 12 8 7.6247 2.1720 -2.1285 13 6 8.7873 1.2269 -0.3383 14 6 8.7236 0.7325 0.9682 15 6 9.8507 0.2543 1.5730 16 6 11.0708 0.2704 0.8905 17 6 12.2901 -0.2400 1.5466 18 6 12.3493 -0.7449 2.7970 19 6 13.6026 -1.1600 3.1917 20 6 14.5666 -0.9994 2.2785 21 6 16.0134 -1.3751 2.4702 22 8 16.5529 -0.6451 3.5740 23 14 16.9712 -0.9649 0.9259 24 16 13.8902 -0.2911 0.8180 25 6 11.1360 0.7706 -0.4136 26 6 10.0076 1.2429 -1.0209 27 6 4.1078 2.7142 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.5253 1.4149 -2.2079 32 1 4.6657 0.1562 -1.5646 33 1 6.3470 1.3749 0.5683 34 1 7.7818 0.7238 1.4969 35 1 9.8005 -0.1320 2.5803 36 1 11.4829 -0.8175 3.4376 37 1 13.7926 -1.5832 4.1669 38 1 16.0878 -2.4440 2.6703 39 1 16.5195 0.3151 3.4644 40 1 18.3999 -1.3301 1.1023 41 1 16.3998 -1.6937 -0.2349 42 1 12.0783 0.7827 -0.9409 43 1 10.0579 1.6296 -2.0280 44 1 4.5105 3.0293 0.9631 45 1 3.4169 3.4406 -0.4275 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:04:02 Heat of formation + Delta-G solvation = -58.704941 kcal Electronic energy + Delta-G solvation = -29371.759816 eV Core-core repulsion = 25027.678908 eV Total energy + Delta-G solvation = -4344.080908 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.107 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.08636 -41.28695 -40.22121 -39.34634 -38.77663 -37.43435 -37.32929 -34.68090 -33.38409 -32.29448 -30.56998 -29.43674 -27.60877 -26.97036 -26.73466 -24.81667 -24.04596 -23.53190 -22.53936 -21.87842 -20.51478 -20.31812 -19.35770 -18.93061 -18.47569 -17.83774 -17.68728 -17.38919 -17.12113 -16.68906 -16.33519 -16.27522 -16.13578 -16.06135 -15.60460 -15.38680 -15.05041 -14.93685 -14.55911 -14.53701 -14.31653 -14.21573 -13.95788 -13.79167 -13.66677 -13.54950 -13.32037 -13.22734 -13.11760 -12.87542 -12.61800 -12.26863 -12.15280 -11.95990 -11.85047 -11.80270 -11.62827 -11.34561 -11.04306 -10.84905 -10.58001 -10.26790 -10.22742 -9.60724 -9.08944 -5.21572 -0.94173 0.20125 0.26985 0.32685 0.70025 1.13031 1.16253 1.48644 1.55744 1.68047 1.83967 1.91900 1.94254 2.77688 3.12084 3.20408 3.28885 3.35340 3.53748 3.55953 3.63215 3.65219 3.68325 3.74183 3.92697 4.09658 4.14165 4.21736 4.22019 4.28784 4.36533 4.38324 4.44755 4.50783 4.53119 4.57438 4.62361 4.67897 4.74916 4.81945 4.86948 4.92498 5.03289 5.15696 5.21334 5.23581 5.36510 5.38840 5.40080 5.65562 6.32747 6.40411 6.70810 7.09385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.503 6.503 5 C -0.113 4.113 6 H 0.125 0.875 7 C -0.132 4.132 8 C 0.122 3.878 9 H 0.116 0.884 10 N -0.711 5.711 11 C 0.564 3.436 12 O -0.528 6.528 13 C -0.137 4.137 14 C -0.078 4.078 15 C -0.110 4.110 16 C 0.014 3.986 17 C -0.149 4.149 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.219 4.219 21 C -0.026 4.026 22 O -0.534 6.534 23 Si 0.651 3.349 24 S 0.133 5.867 25 C -0.120 4.120 26 C -0.048 4.048 27 C -0.124 4.124 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.381 0.619 40 H -0.232 1.232 41 H -0.237 1.237 42 H 0.131 0.869 43 H 0.142 0.858 44 H 0.086 0.914 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -0.951 2.898 3.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.390 6.390 5 C -0.133 4.133 6 H 0.142 0.858 7 C -0.171 4.171 8 C 0.017 3.983 9 H 0.134 0.866 10 N -0.363 5.363 11 C 0.352 3.648 12 O -0.405 6.405 13 C -0.141 4.141 14 C -0.096 4.096 15 C -0.130 4.130 16 C 0.012 3.988 17 C -0.266 4.266 18 C -0.149 4.149 19 C -0.134 4.134 20 C -0.336 4.336 21 C -0.140 4.140 22 O -0.340 6.340 23 Si 0.551 3.449 24 S 0.401 5.599 25 C -0.139 4.139 26 C -0.066 4.066 27 C -0.162 4.162 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.237 0.763 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.229 0.771 40 H -0.155 1.155 41 H -0.161 1.161 42 H 0.149 0.851 43 H 0.160 0.840 44 H 0.105 0.895 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.135 -0.840 0.223 1.429 hybrid contribution -1.341 -1.074 2.335 2.899 sum -0.207 -1.914 2.558 3.201 Atomic orbital electron populations 1.23327 0.75927 1.04019 1.02737 1.86518 1.23750 1.33358 1.83797 1.23549 0.91648 0.81438 0.72136 1.90689 1.66956 1.36421 1.44976 1.22684 0.87684 1.01041 1.01843 0.85752 1.23435 0.97812 1.01235 0.94574 1.21802 0.83389 0.96446 0.96691 0.86574 1.45584 1.07384 1.64771 1.18589 1.18209 0.82986 0.77964 0.85641 1.90824 1.85901 1.45877 1.17911 1.19966 0.94055 1.04687 0.95361 1.20953 0.98741 0.96383 0.93561 1.20869 0.91187 1.00439 1.00482 1.18305 0.90843 0.96291 0.93327 1.23082 0.96638 1.08535 0.98318 1.20391 0.98808 1.00650 0.95077 1.20005 0.91189 1.01337 1.00857 1.25101 1.00851 1.09508 0.98180 1.24412 0.90288 0.99078 1.00180 1.86529 1.82740 1.22933 1.41752 0.95001 0.82002 0.91699 0.76234 1.84160 0.99939 1.59991 1.15857 1.20982 0.99151 0.99701 0.94052 1.20952 0.90504 0.94926 1.00248 1.23369 0.96994 0.94819 1.01062 0.87850 0.91727 0.91722 0.88219 0.89354 0.76268 0.85224 0.84787 0.83743 0.83647 0.85892 0.77107 1.15511 1.16120 0.85108 0.83997 0.89528 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.38 10.56 -39.27 -0.41 -0.80 16 3 C 0.47 0.59 7.49 36.01 0.27 0.86 16 4 O -0.50 -2.08 15.65 -18.75 -0.29 -2.37 16 5 C -0.11 0.21 4.15 -90.86 -0.38 -0.17 16 6 H 0.12 -0.49 8.14 -51.93 -0.42 -0.92 16 7 C -0.13 0.22 7.44 -25.82 -0.19 0.02 16 8 C 0.12 -0.16 4.32 -67.12 -0.29 -0.45 16 9 H 0.12 0.03 7.47 -51.93 -0.39 -0.36 16 10 N -0.71 1.21 5.21 -54.05 -0.28 0.93 16 11 C 0.56 0.74 7.76 -12.46 -0.10 0.64 16 12 O -0.53 -2.70 15.93 5.28 0.08 -2.62 16 13 C -0.14 -0.02 5.88 -104.90 -0.62 -0.63 16 14 C -0.08 0.16 9.48 -39.59 -0.38 -0.21 16 15 C -0.11 0.18 9.48 -39.60 -0.38 -0.20 16 16 C 0.01 0.00 5.88 -104.91 -0.62 -0.62 16 17 C -0.15 0.02 6.37 -36.94 -0.24 -0.22 16 18 C -0.12 0.09 9.64 -40.90 -0.39 -0.30 16 19 C -0.10 0.04 10.00 -41.32 -0.41 -0.37 16 20 C -0.22 0.10 5.73 -35.88 -0.21 -0.11 16 21 C -0.03 0.02 2.96 36.01 0.11 0.13 16 22 O -0.53 0.26 12.86 -35.23 -0.45 -0.19 16 23 Si 0.65 -0.80 30.96 -169.99 -5.26 -6.06 16 24 S 0.13 -0.07 19.46 -107.50 -2.09 -2.16 16 25 C -0.12 0.01 9.54 -39.59 -0.38 -0.37 16 26 C -0.05 -0.03 9.53 -39.59 -0.38 -0.40 16 27 C -0.12 0.25 7.15 -25.92 -0.19 0.07 16 28 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 29 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 30 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 31 H 0.10 -0.14 8.09 -51.93 -0.42 -0.56 16 32 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 33 H 0.40 -1.79 6.71 -40.82 -0.27 -2.06 16 34 H 0.13 -0.66 6.38 -52.49 -0.34 -1.00 16 35 H 0.13 -0.49 6.74 -52.49 -0.35 -0.84 16 36 H 0.14 -0.39 6.88 -52.49 -0.36 -0.75 16 37 H 0.15 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 39 H 0.38 -1.59 8.70 45.56 0.40 -1.20 16 40 H -0.23 -0.33 7.11 56.52 0.40 0.08 16 41 H -0.24 -0.22 7.11 56.52 0.40 0.18 16 42 H 0.13 -0.16 7.26 -52.49 -0.38 -0.54 16 43 H 0.14 0.09 7.64 -52.49 -0.40 -0.31 16 44 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 45 H 0.11 -0.09 7.43 -51.93 -0.39 -0.48 16 LS Contribution 396.35 15.07 5.97 5.97 Total: 0.00 -9.49 396.35 -11.90 -21.38 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -5.47 Total: -12.79 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.69 Total: -1.29 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -0.28 Total: 0.93 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -1.08 Total: -5.98 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -5.26 Total: -6.06 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.09 Total: -2.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -9.49 -11.90 -21.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.321 kcal (2) G-P(sol) polarization free energy of solvation -9.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds