Wall clock time and date at job start Sat Mar 6 2021 16:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00369 * 2 1 4 4 O 1.20822 * 119.99583 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00053 * 179.97438 * 3 2 1 6 6 H 1.08993 * 112.91004 * 311.24954 * 5 3 2 7 7 C 1.53962 * 113.66521 * 82.55365 * 5 3 2 8 8 C 1.53782 * 87.11063 * 139.88647 * 7 5 3 9 9 H 1.09001 * 113.61250 * 220.08565 * 8 7 5 10 10 N 1.46501 * 113.61142 * 89.18830 * 8 7 5 11 11 C 1.34769 * 120.00014 * 107.50467 * 10 8 7 12 12 O 1.21600 * 120.00327 * 359.97438 * 11 10 8 13 13 C 1.47555 * 120.00109 * 179.97438 * 11 10 8 14 14 C 1.39835 * 120.00182 * 359.71866 * 13 11 10 15 15 C 1.36562 * 119.99943 * 179.68923 * 14 13 11 16 16 C 1.39819 * 119.99956 * 0.59238 * 15 14 13 17 17 C 1.47569 * 119.99767 * 179.68929 * 16 15 14 18 18 C 1.34977 * 125.27423 * 0.02562 * 17 16 15 19 19 C 1.37801 * 114.70069 * 179.97438 * 18 17 16 20 20 C 1.33750 * 115.07630 * 0.02562 * 19 18 17 21 21 C 1.50704 * 125.11204 * 180.02562 * 20 19 18 22 22 O 1.42904 * 109.47050 * 299.99355 * 21 20 19 23 23 Si 1.86300 * 109.46515 * 179.97438 * 21 20 19 24 24 S 1.75850 * 109.76515 * 359.75454 * 20 19 18 25 25 C 1.39824 * 120.00713 * 359.70815 * 16 15 14 26 26 C 1.36566 * 119.99646 * 359.97438 * 25 16 15 27 27 C 1.53781 * 87.08260 * 334.63747 * 8 7 5 28 28 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47107 * 300.00189 * 1 2 3 30 30 H 1.09006 * 109.46965 * 60.00398 * 1 2 3 31 31 H 1.08997 * 113.53543 * 25.33321 * 7 5 3 32 32 H 1.08998 * 113.73879 * 254.46919 * 7 5 3 33 33 H 0.97001 * 119.99973 * 287.49325 * 10 8 7 34 34 H 1.08002 * 119.99712 * 0.02562 * 14 13 11 35 35 H 1.07993 * 119.99992 * 180.29531 * 15 14 13 36 36 H 1.07992 * 122.65309 * 359.95424 * 18 17 16 37 37 H 1.07994 * 122.46314 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47393 * 59.99884 * 21 20 19 39 39 H 0.96704 * 113.99893 * 300.00330 * 22 21 20 40 40 H 1.48509 * 109.99731 * 179.97438 * 23 21 20 41 41 H 1.48498 * 110.00184 * 301.31671 * 23 21 20 42 42 H 1.07991 * 120.00478 * 180.02562 * 25 16 15 43 43 H 1.07995 * 120.00229 * 179.97438 * 26 25 16 44 44 H 1.09002 * 113.61445 * 139.98212 * 27 8 7 45 45 H 1.09002 * 113.61408 * 270.79943 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0244 0.6361 0.7557 7 6 4.1936 1.1243 -1.3974 8 6 5.1817 2.2291 -0.9876 9 1 5.3955 2.9413 -1.7846 10 7 6.3921 1.7218 -0.3364 11 6 7.5682 1.7374 -0.9943 12 8 7.6247 2.1720 -2.1285 13 6 8.7873 1.2269 -0.3383 14 6 8.7236 0.7325 0.9682 15 6 9.8507 0.2543 1.5730 16 6 11.0708 0.2704 0.8905 17 6 12.2901 -0.2400 1.5466 18 6 12.3493 -0.7449 2.7970 19 6 13.6026 -1.1600 3.1917 20 6 14.5666 -0.9994 2.2785 21 6 16.0134 -1.3751 2.4702 22 8 16.5529 -0.6451 3.5740 23 14 16.9712 -0.9649 0.9259 24 16 13.8902 -0.2911 0.8180 25 6 11.1360 0.7706 -0.4136 26 6 10.0076 1.2429 -1.0209 27 6 4.1078 2.7142 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.5253 1.4149 -2.2079 32 1 4.6657 0.1562 -1.5646 33 1 6.3470 1.3749 0.5683 34 1 7.7818 0.7238 1.4969 35 1 9.8005 -0.1320 2.5803 36 1 11.4829 -0.8175 3.4376 37 1 13.7926 -1.5832 4.1669 38 1 16.0878 -2.4440 2.6703 39 1 16.5195 0.3151 3.4644 40 1 18.3999 -1.3301 1.1023 41 1 16.3998 -1.6937 -0.2349 42 1 12.0783 0.7827 -0.9409 43 1 10.0579 1.6296 -2.0280 44 1 4.5105 3.0293 0.9631 45 1 3.4169 3.4406 -0.4275 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:04:00 Heat of formation + Delta-G solvation = -56.003724 kcal Electronic energy + Delta-G solvation = -29371.642682 eV Core-core repulsion = 25027.678908 eV Total energy + Delta-G solvation = -4343.963774 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.107 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.09307 -41.30486 -40.16335 -39.28890 -38.77566 -37.45773 -37.34138 -34.70352 -33.30677 -32.18889 -30.50036 -29.39701 -27.54781 -26.84843 -26.66271 -24.74931 -23.95557 -23.45163 -22.53548 -21.85784 -20.47588 -20.23058 -19.29871 -18.88865 -18.47784 -17.86428 -17.62198 -17.42901 -17.09002 -16.60322 -16.26284 -16.18561 -16.12987 -16.03770 -15.54977 -15.29680 -15.03969 -14.87949 -14.48788 -14.43534 -14.33414 -14.21365 -13.88446 -13.73308 -13.59710 -13.47890 -13.26319 -13.15394 -13.05782 -12.85444 -12.58020 -12.27740 -12.05602 -11.87637 -11.83201 -11.75980 -11.55715 -11.38869 -11.15484 -10.79994 -10.52763 -10.20428 -10.15744 -9.54005 -9.01543 -5.15617 -0.87307 0.26649 0.36962 0.39757 0.77525 1.06429 1.22707 1.53013 1.59437 1.72624 1.85316 1.96402 1.96587 2.84541 3.22664 3.31467 3.40749 3.45770 3.63674 3.69412 3.74288 3.75441 3.78623 3.87459 4.06006 4.22678 4.25845 4.28404 4.33671 4.37874 4.48098 4.48594 4.57230 4.62301 4.64079 4.68543 4.72315 4.79904 4.88664 4.95151 4.98566 5.03292 5.12933 5.24774 5.31061 5.34465 5.34829 5.45660 5.50157 5.75925 6.42996 6.65144 6.66813 7.11148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.468 3.532 4 O -0.538 6.538 5 C -0.105 4.105 6 H 0.155 0.845 7 C -0.129 4.129 8 C 0.122 3.878 9 H 0.096 0.904 10 N -0.693 5.693 11 C 0.562 3.438 12 O -0.577 6.577 13 C -0.150 4.150 14 C -0.066 4.066 15 C -0.109 4.109 16 C 0.006 3.994 17 C -0.159 4.159 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.222 4.222 21 C -0.025 4.025 22 O -0.547 6.547 23 Si 0.716 3.284 24 S 0.121 5.879 25 C -0.129 4.129 26 C -0.063 4.063 27 C -0.117 4.117 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.418 0.582 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.397 0.603 40 H -0.269 1.269 41 H -0.268 1.268 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.105 0.895 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -1.758 5.171 5.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.312 3.688 4 O -0.428 6.428 5 C -0.123 4.123 6 H 0.173 0.827 7 C -0.168 4.168 8 C 0.016 3.984 9 H 0.114 0.886 10 N -0.345 5.345 11 C 0.351 3.649 12 O -0.458 6.458 13 C -0.153 4.153 14 C -0.084 4.084 15 C -0.129 4.129 16 C 0.004 3.996 17 C -0.276 4.276 18 C -0.147 4.147 19 C -0.140 4.140 20 C -0.340 4.340 21 C -0.138 4.138 22 O -0.355 6.355 23 Si 0.620 3.380 24 S 0.388 5.612 25 C -0.148 4.148 26 C -0.082 4.082 27 C -0.155 4.155 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.257 0.743 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.247 0.753 40 H -0.195 1.195 41 H -0.194 1.194 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.123 0.877 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.527 -1.648 2.537 3.071 hybrid contribution -1.164 -0.856 1.627 2.176 sum -0.637 -2.504 4.164 4.900 Atomic orbital electron populations 1.23518 0.75163 1.05564 1.02409 1.86520 1.24673 1.33273 1.83492 1.24144 0.92729 0.80961 0.70944 1.90675 1.67951 1.37464 1.46706 1.22824 0.85671 1.01562 1.02278 0.82717 1.23397 0.97482 1.01166 0.94734 1.21717 0.83594 0.96413 0.96695 0.88596 1.45412 1.06354 1.63698 1.19046 1.18455 0.83939 0.77332 0.85128 1.90801 1.86623 1.48262 1.20072 1.19976 0.93180 1.05682 0.96480 1.21283 1.00208 0.94567 0.92370 1.21203 0.90458 0.99754 1.01451 1.18471 0.91582 0.96278 0.93230 1.23182 0.96503 1.09194 0.98713 1.20635 0.99398 0.99700 0.94935 1.20191 0.91369 1.01307 1.01152 1.25160 1.01003 1.09629 0.98182 1.24395 0.90240 0.99076 1.00087 1.86492 1.82730 1.24424 1.41845 0.94184 0.78728 0.90753 0.74362 1.84204 1.00553 1.60216 1.16190 1.21027 0.99053 1.00149 0.94590 1.20949 0.91365 0.95800 1.00103 1.23289 0.96106 0.94589 1.01498 0.85417 0.91927 0.92241 0.88949 0.88936 0.74276 0.81670 0.82179 0.81525 0.82905 0.86047 0.75324 1.19458 1.19380 0.84937 0.85306 0.87668 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.58 10.56 -51.45 -0.54 -1.13 16 3 C 0.47 1.08 7.49 71.24 0.53 1.61 16 4 O -0.54 -4.78 15.65 21.98 0.34 -4.43 16 5 C -0.10 0.51 4.15 -10.95 -0.05 0.47 16 6 H 0.16 -1.70 8.14 -2.39 -0.02 -1.72 16 7 C -0.13 0.45 7.44 31.18 0.23 0.68 16 8 C 0.12 -0.32 4.32 45.52 0.20 -0.12 16 9 H 0.10 0.20 7.47 -2.39 -0.02 0.18 16 10 N -0.69 3.02 5.21 -443.17 -2.31 0.71 16 11 C 0.56 1.69 7.76 86.70 0.67 2.36 16 12 O -0.58 -7.04 15.93 -4.03 -0.06 -7.11 16 13 C -0.15 -0.02 5.88 -20.05 -0.12 -0.14 16 14 C -0.07 0.42 9.48 22.26 0.21 0.63 16 15 C -0.11 0.60 9.48 22.26 0.21 0.81 16 16 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 17 C -0.16 0.16 6.37 23.98 0.15 0.31 16 18 C -0.12 0.37 9.64 21.42 0.21 0.58 16 19 C -0.11 0.22 10.00 21.15 0.21 0.43 16 20 C -0.22 0.28 5.73 24.67 0.14 0.42 16 21 C -0.02 0.04 2.96 71.24 0.21 0.25 16 22 O -0.55 0.81 12.86 -148.98 -1.92 -1.11 16 23 Si 0.72 -1.21 30.96 68.60 2.12 0.91 16 24 S 0.12 -0.10 19.46 -56.49 -1.10 -1.20 16 25 C -0.13 -0.08 9.54 22.26 0.21 0.13 16 26 C -0.06 -0.16 9.53 22.27 0.21 0.06 16 27 C -0.12 0.55 7.15 31.12 0.22 0.77 16 28 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 30 H 0.06 -0.05 8.13 -2.38 -0.02 -0.06 16 31 H 0.09 -0.17 8.09 -2.39 -0.02 -0.19 16 32 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.42 -4.83 6.71 -92.71 -0.62 -5.46 16 34 H 0.17 -2.35 6.38 -2.91 -0.02 -2.37 16 35 H 0.16 -1.76 6.74 -2.91 -0.02 -1.78 16 36 H 0.17 -1.39 6.88 -2.91 -0.02 -1.41 16 37 H 0.15 -0.57 8.06 -2.91 -0.02 -0.59 16 38 H 0.12 -0.18 7.96 -2.39 -0.02 -0.20 16 39 H 0.40 -3.57 8.70 -74.05 -0.64 -4.22 16 40 H -0.27 -1.15 7.11 99.48 0.71 -0.44 16 41 H -0.27 -0.86 7.11 99.48 0.71 -0.15 16 42 H 0.13 -0.11 7.26 -2.92 -0.02 -0.13 16 43 H 0.13 0.54 7.64 -2.91 -0.02 0.52 16 44 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.10 -0.10 7.43 -2.39 -0.02 -0.12 16 Total: 0.00 -24.46 396.35 0.91 -23.55 By element: Atomic # 1 Polarization: -20.29 SS G_CDS: -0.17 Total: -20.46 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 4.54 Total: 10.26 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -2.31 Total: 0.71 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -2.18 Total: -13.78 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.12 Total: 0.91 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.10 Total: -1.20 kcal Total: -24.46 0.91 -23.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.456 kcal (2) G-P(sol) polarization free energy of solvation -24.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds