Wall clock time and date at job start Sat Mar 6 2021 16:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00369 * 2 1 4 4 O 1.20822 * 119.99583 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00053 * 179.97438 * 3 2 1 6 6 H 1.08993 * 112.91004 * 311.24954 * 5 3 2 7 7 C 1.53962 * 113.66521 * 82.55365 * 5 3 2 8 8 C 1.53782 * 87.11063 * 139.88647 * 7 5 3 9 9 H 1.09001 * 113.61250 * 220.08565 * 8 7 5 10 10 N 1.46501 * 113.61142 * 89.18830 * 8 7 5 11 11 C 1.34769 * 120.00014 * 107.50467 * 10 8 7 12 12 O 1.21594 * 120.00013 * 359.97438 * 11 10 8 13 13 C 1.47542 * 120.00264 * 179.97438 * 11 10 8 14 14 C 1.40128 * 120.19335 * 179.72213 * 13 11 10 15 15 O 1.35657 * 120.15375 * 359.97438 * 14 13 11 16 16 C 1.38714 * 119.69995 * 179.79020 * 14 13 11 17 17 C 1.50697 * 119.95826 * 180.20298 * 16 14 13 18 18 O 1.42902 * 109.47452 * 285.27902 * 17 16 14 19 19 Si 1.86299 * 109.47000 * 165.27746 * 17 16 14 20 20 C 1.38055 * 120.08213 * 0.48522 * 16 14 13 21 21 C 1.38544 * 120.38695 * 359.74245 * 20 16 14 22 22 C 1.50706 * 119.84870 * 180.02562 * 21 20 16 23 23 C 1.37787 * 120.30739 * 0.02562 * 21 20 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 8 7 5 25 25 H 1.09001 * 109.47107 * 300.00189 * 1 2 3 26 26 H 1.09006 * 109.46965 * 60.00398 * 1 2 3 27 27 H 1.08998 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.08997 * 113.53543 * 25.33321 * 7 5 3 29 29 H 1.08998 * 113.73879 * 254.46919 * 7 5 3 30 30 H 0.97001 * 119.99973 * 287.49325 * 10 8 7 31 31 H 0.96696 * 114.00379 * 89.99501 * 15 14 13 32 32 H 1.09002 * 109.47406 * 45.28002 * 17 16 14 33 33 H 0.96703 * 113.99666 * 180.02562 * 18 17 16 34 34 H 1.48500 * 110.00124 * 298.68550 * 19 17 16 35 35 H 1.48501 * 109.99743 * 60.00123 * 19 17 16 36 36 H 1.07997 * 119.80420 * 179.72300 * 20 16 14 37 37 H 1.08998 * 109.47124 * 270.02544 * 22 21 20 38 38 H 1.09002 * 109.46887 * 30.02414 * 22 21 20 39 39 H 1.08995 * 109.47423 * 150.02297 * 22 21 20 40 40 H 1.07994 * 120.04778 * 179.97438 * 23 21 20 41 41 H 1.09002 * 113.61445 * 139.98212 * 24 8 7 42 42 H 1.09002 * 113.61408 * 270.79943 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0244 0.6361 0.7557 7 6 4.1936 1.1243 -1.3974 8 6 5.1817 2.2291 -0.9876 9 1 5.3955 2.9413 -1.7846 10 7 6.3921 1.7218 -0.3364 11 6 7.5682 1.7374 -0.9943 12 8 7.6246 2.1720 -2.1285 13 6 8.7872 1.2270 -0.3384 14 6 10.0111 1.2359 -1.0208 15 8 10.0809 1.7135 -2.2886 16 6 11.1517 0.7576 -0.3927 17 6 12.4717 0.7687 -1.1196 18 8 12.4869 -0.2748 -2.0957 19 14 13.8542 0.4987 0.0997 20 6 11.0779 0.2661 0.8952 21 6 9.8689 0.2512 1.5715 22 6 9.8023 -0.2875 2.9774 23 6 8.7268 0.7268 0.9647 24 6 4.1078 2.7142 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5253 1.4149 -2.2079 29 1 4.6657 0.1562 -1.5646 30 1 6.3470 1.3749 0.5683 31 1 10.2702 2.6603 -2.3424 32 1 12.6062 1.7308 -1.6141 33 1 13.3088 -0.3272 -2.6026 34 1 13.8690 1.5947 1.1017 35 1 13.6824 -0.8097 0.7807 36 1 11.9679 -0.1093 1.3783 37 1 9.5919 -1.3566 2.9472 38 1 10.7566 -0.1190 3.4766 39 1 9.0106 0.2233 3.5252 40 1 7.7865 0.7128 1.4956 41 1 4.5105 3.0293 0.9631 42 1 3.4169 3.4406 -0.4275 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_13422088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:04:06 Heat of formation + Delta-G solvation = -135.271805 kcal Electronic energy + Delta-G solvation = -27109.899695 eV Core-core repulsion = 23023.106341 eV Total energy + Delta-G solvation = -4086.793354 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.18570 -41.66403 -40.46652 -39.04738 -38.12998 -37.58045 -37.45087 -34.68303 -33.24292 -32.68914 -29.44995 -27.66040 -27.19163 -26.88221 -26.79256 -25.16378 -22.61840 -21.88419 -21.76350 -20.50654 -19.58982 -19.04029 -18.44602 -18.33688 -17.83520 -17.70837 -17.43911 -16.85786 -16.70853 -16.07015 -16.03824 -15.52399 -15.32845 -15.13456 -14.86989 -14.77652 -14.56927 -14.30302 -14.28729 -13.78531 -13.70546 -13.49689 -13.18550 -13.12811 -13.01707 -12.88376 -12.72494 -12.48152 -12.04893 -11.92493 -11.87111 -11.82022 -11.74167 -11.42282 -11.00900 -10.38753 -10.28721 -10.12957 -9.62045 -4.95729 -0.48516 -0.03422 1.03137 1.25203 1.57043 1.64279 1.69622 1.87395 1.91918 2.44106 3.05112 3.18604 3.27160 3.30435 3.42529 3.57383 3.64164 3.72481 3.83350 3.97378 4.01564 4.07112 4.21901 4.23539 4.26176 4.40411 4.45028 4.51754 4.58949 4.64110 4.66882 4.69785 4.74402 4.75438 4.84112 4.86256 4.94516 5.06489 5.09577 5.27300 5.31492 5.41225 5.54088 6.36458 6.62072 6.66925 6.88762 7.06787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.537 6.537 5 C -0.105 4.105 6 H 0.153 0.847 7 C -0.130 4.130 8 C 0.123 3.877 9 H 0.097 0.903 10 N -0.694 5.694 11 C 0.563 3.437 12 O -0.556 6.556 13 C -0.177 4.177 14 C 0.169 3.831 15 O -0.484 6.484 16 C -0.127 4.127 17 C -0.081 4.081 18 O -0.564 6.564 19 Si 0.780 3.220 20 C -0.096 4.096 21 C -0.098 4.098 22 C -0.117 4.117 23 C -0.058 4.058 24 C -0.115 4.115 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.416 0.584 31 H 0.403 0.597 32 H 0.084 0.916 33 H 0.401 0.599 34 H -0.282 1.282 35 H -0.285 1.285 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.169 0.831 41 H 0.105 0.895 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -1.481 5.579 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.171 0.829 7 C -0.169 4.169 8 C 0.018 3.982 9 H 0.115 0.885 10 N -0.347 5.347 11 C 0.352 3.648 12 O -0.434 6.434 13 C -0.180 4.180 14 C 0.122 3.878 15 O -0.296 6.296 16 C -0.127 4.127 17 C -0.189 4.189 18 O -0.373 6.373 19 Si 0.684 3.316 20 C -0.114 4.114 21 C -0.098 4.098 22 C -0.173 4.173 23 C -0.076 4.076 24 C -0.153 4.153 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.255 0.745 31 H 0.263 0.737 32 H 0.102 0.898 33 H 0.251 0.749 34 H -0.209 1.209 35 H -0.212 1.212 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.187 0.813 41 H 0.123 0.877 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.646 -1.666 5.660 6.466 hybrid contribution -0.895 0.553 0.019 1.052 sum 1.751 -1.113 5.679 6.046 Atomic orbital electron populations 1.23521 0.75107 1.05573 1.02445 1.86522 1.24726 1.33250 1.83477 1.24096 0.92644 0.80986 0.70964 1.90673 1.67911 1.37424 1.46692 1.22811 0.85802 1.01613 1.02141 0.82913 1.23403 0.97569 1.01093 0.94853 1.21713 0.83442 0.96357 0.96722 0.88465 1.45402 1.06336 1.64063 1.18946 1.18157 0.83557 0.77878 0.85251 1.90822 1.86302 1.47165 1.19157 1.20429 0.93593 1.07613 0.96395 1.18477 0.90692 0.94995 0.83639 1.84766 1.93552 1.29844 1.21475 1.20030 0.94943 1.03016 0.94759 1.24868 1.00577 0.94374 0.99105 1.86493 1.44652 1.52838 1.53343 0.94021 0.83532 0.76936 0.77098 1.21245 0.98880 0.97458 0.93826 1.20115 0.91993 0.99237 0.98445 1.20922 1.04341 1.02084 0.89993 1.21452 0.99800 0.94469 0.91891 1.23282 0.96019 0.94529 1.01449 0.91874 0.92205 0.85431 0.88820 0.89311 0.74544 0.73722 0.89848 0.74856 1.20867 1.21237 0.85113 0.89807 0.91085 0.88765 0.81344 0.87655 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.94 10.56 -51.45 -0.54 -1.48 16 3 C 0.47 1.53 7.49 71.24 0.53 2.07 16 4 O -0.54 -5.15 15.65 21.98 0.34 -4.81 16 5 C -0.10 0.37 4.15 -10.95 -0.05 0.32 16 6 H 0.15 -1.42 8.14 -2.39 -0.02 -1.44 16 7 C -0.13 0.22 7.44 31.18 0.23 0.45 16 8 C 0.12 -0.14 4.32 45.52 0.20 0.06 16 9 H 0.10 0.32 7.47 -2.39 -0.02 0.30 16 10 N -0.69 1.46 5.21 -443.19 -2.31 -0.85 16 11 C 0.56 3.33 7.76 86.70 0.67 4.00 16 12 O -0.56 -7.89 14.76 16.91 0.25 -7.64 16 13 C -0.18 -0.79 5.89 -20.01 -0.12 -0.90 16 14 C 0.17 1.31 6.69 22.84 0.15 1.46 16 15 O -0.48 -4.57 10.91 -68.81 -0.75 -5.32 16 16 C -0.13 -0.71 5.30 -19.80 -0.10 -0.82 16 17 C -0.08 -0.10 2.36 71.23 0.17 0.06 16 18 O -0.56 -1.97 12.86 -148.98 -1.92 -3.88 16 19 Si 0.78 -2.18 30.19 68.60 2.07 -0.11 16 20 C -0.10 -0.31 8.30 22.30 0.19 -0.13 16 21 C -0.10 0.07 5.87 -19.90 -0.12 -0.05 16 22 C -0.12 0.74 10.00 71.24 0.71 1.45 16 23 C -0.06 0.11 9.18 22.52 0.21 0.32 16 24 C -0.11 0.42 7.15 31.12 0.22 0.64 16 25 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 26 H 0.06 -0.01 8.13 -2.38 -0.02 -0.02 16 27 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H 0.09 -0.03 8.09 -2.39 -0.02 -0.05 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.42 -3.75 6.73 -92.71 -0.62 -4.38 16 31 H 0.40 0.80 9.06 -74.06 -0.67 0.13 16 32 H 0.08 -0.16 7.84 -2.39 -0.02 -0.18 16 33 H 0.40 -2.91 8.74 -74.06 -0.65 -3.55 16 34 H -0.28 -0.48 7.11 99.48 0.71 0.22 16 35 H -0.28 -0.84 6.74 99.48 0.67 -0.17 16 36 H 0.13 0.27 4.87 -2.91 -0.01 0.25 16 37 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.07 -0.44 8.08 -2.39 -0.02 -0.46 16 39 H 0.09 -0.96 8.08 -2.39 -0.02 -0.98 16 40 H 0.17 -1.75 6.40 -2.91 -0.02 -1.77 16 41 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.10 -0.03 7.43 -2.39 -0.02 -0.05 16 Total: 0.00 -28.98 356.24 0.39 -28.59 By element: Atomic # 1 Polarization: -13.76 SS G_CDS: -0.85 Total: -14.60 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 4.09 Total: 10.12 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -2.31 Total: -0.85 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -2.62 Total: -23.14 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.07 Total: -0.11 kcal Total: -28.98 0.39 -28.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13422088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.684 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds