Wall clock time and date at job start Sat Mar 6 2021 16:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99771 * 2 1 4 4 O 1.20825 * 120.00041 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84638 * 48.80017 * 5 3 2 7 7 C 1.53777 * 113.61313 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.08192 * 140.06331 * 7 5 3 9 9 H 1.08997 * 113.61612 * 219.93452 * 8 7 5 10 10 N 1.46505 * 113.61379 * 89.11293 * 8 7 5 11 11 C 1.34774 * 119.99855 * 155.00150 * 10 8 7 12 12 O 1.21592 * 120.00422 * 0.02562 * 11 10 8 13 13 C 1.47523 * 119.99873 * 179.97438 * 11 10 8 14 14 C 1.39773 * 120.06882 * 180.02562 * 13 11 10 15 15 C 1.37633 * 119.93149 * 179.97438 * 14 13 11 16 16 C 1.50696 * 119.96370 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47131 * 254.99412 * 16 15 14 18 18 Si 1.86292 * 109.47450 * 14.99748 * 16 15 14 19 19 C 1.39193 * 120.06610 * 0.25160 * 15 14 13 20 20 N 1.39053 * 119.92789 * 179.72312 * 19 15 14 21 21 C 1.46904 * 110.99497 * 120.00092 * 20 19 15 22 22 C 1.46904 * 110.99957 * 243.95040 * 20 19 15 23 23 C 1.39240 * 120.14026 * 359.48808 * 19 15 14 24 24 C 1.37590 * 120.07004 * 0.51536 * 23 19 15 25 25 C 1.53780 * 87.08252 * 334.56537 * 8 7 5 26 26 H 1.09002 * 109.46817 * 60.00595 * 1 2 3 27 27 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47246 * 300.00393 * 1 2 3 29 29 H 1.08994 * 113.61644 * 25.51441 * 7 5 3 30 30 H 1.09005 * 113.68690 * 254.61928 * 7 5 3 31 31 H 0.97004 * 120.00064 * 334.99957 * 10 8 7 32 32 H 1.08006 * 120.03507 * 359.97438 * 14 13 11 33 33 H 1.09008 * 109.47144 * 135.00183 * 16 15 14 34 34 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 35 35 H 1.48500 * 110.00207 * 59.99993 * 18 16 15 36 36 H 1.48510 * 110.00345 * 181.31868 * 18 16 15 37 37 H 1.08996 * 109.47559 * 60.00507 * 21 20 19 38 38 H 1.09006 * 109.46908 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47256 * 299.99670 * 21 20 19 40 40 H 1.08995 * 109.46601 * 60.00520 * 22 20 19 41 41 H 1.08999 * 109.46565 * 179.97438 * 22 20 19 42 42 H 1.08999 * 109.47202 * 300.00405 * 22 20 19 43 43 H 1.08001 * 119.96848 * 180.27723 * 23 19 15 44 44 H 1.07995 * 120.03877 * 179.71866 * 24 23 19 45 45 H 1.09002 * 113.61671 * 139.97935 * 25 8 7 46 46 H 1.09002 * 113.61471 * 270.88533 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0239 0.6363 -0.7549 7 6 4.1076 2.7143 0.0011 8 6 5.1819 2.2263 0.9873 9 1 5.3988 2.9378 1.7841 10 7 6.3907 1.7179 0.3340 11 6 7.5676 1.7306 0.9906 12 8 7.6262 2.1637 2.1253 13 6 8.7847 1.2182 0.3330 14 6 10.0059 1.2302 1.0128 15 6 11.1395 0.7509 0.3968 16 6 12.4567 0.7641 1.1288 17 8 13.2771 1.8149 0.6142 18 14 12.1548 1.0449 2.9455 19 6 11.0716 0.2594 -0.9037 20 7 12.2198 -0.2189 -1.5254 21 6 12.0659 -1.6308 -1.9009 22 6 12.5667 0.6017 -2.6934 23 6 9.8556 0.2410 -1.5816 24 6 8.7188 0.7188 -0.9713 25 6 4.1925 1.1227 1.3969 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.4176 3.4402 0.4312 30 1 4.5100 3.0313 -0.9611 31 1 6.3439 1.3720 -0.5710 32 1 10.0600 1.6153 2.0205 33 1 12.9604 -0.1923 0.9877 34 1 13.4755 1.7332 -0.3287 35 1 11.3027 -0.0413 3.4927 36 1 13.4480 1.0918 3.6741 37 1 11.2270 -1.7344 -2.5890 38 1 12.9783 -1.9796 -2.3847 39 1 11.8786 -2.2261 -1.0072 40 1 12.7435 1.6293 -2.3759 41 1 13.4686 0.2059 -3.1605 42 1 11.7459 0.5790 -3.4102 43 1 9.8052 -0.1452 -2.5890 44 1 7.7767 0.7085 -1.4992 45 1 4.6631 0.1532 1.5610 46 1 3.5256 1.4134 2.2086 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12121848_13422196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:04:10 Heat of formation + Delta-G solvation = -78.014655 kcal Electronic energy + Delta-G solvation = -28893.823412 eV Core-core repulsion = 24751.693957 eV Total energy + Delta-G solvation = -4142.129454 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13453 -41.63326 -40.66793 -39.21144 -37.69371 -37.37347 -37.24896 -34.59079 -32.73347 -31.39469 -29.45259 -28.81271 -27.31011 -26.97679 -26.93281 -25.92990 -23.57952 -23.02972 -22.47050 -21.35182 -20.51960 -19.28227 -18.73809 -18.02552 -17.96284 -17.68407 -17.40524 -17.36088 -16.69968 -16.45475 -16.04573 -16.02507 -15.73060 -15.41876 -15.13549 -15.06514 -14.92490 -14.58776 -14.29115 -14.08825 -14.00315 -13.79345 -13.67383 -13.53421 -13.23905 -13.15301 -13.09062 -12.89883 -12.87637 -12.74818 -11.96438 -11.92227 -11.85904 -11.81004 -11.35328 -11.31929 -11.16706 -10.94917 -10.26809 -10.13972 -9.87353 -9.79002 -4.75010 -0.44729 0.09552 1.12500 1.48212 1.63042 1.67597 1.77492 1.89831 2.08993 2.56332 2.60106 3.11438 3.20393 3.43595 3.50126 3.58329 3.63599 3.65978 3.84931 3.91981 3.94286 4.02610 4.12091 4.12465 4.13367 4.21264 4.30207 4.32874 4.36187 4.37482 4.50442 4.54497 4.56477 4.59255 4.65225 4.70431 4.72138 4.74592 4.74877 4.86647 4.95071 5.06179 5.15551 5.35778 5.37100 5.47037 5.55025 6.07135 6.31224 6.65762 6.70156 7.08068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.503 6.503 5 C -0.114 4.114 6 H 0.124 0.876 7 C -0.124 4.124 8 C 0.123 3.877 9 H 0.118 0.882 10 N -0.711 5.711 11 C 0.564 3.436 12 O -0.524 6.524 13 C -0.134 4.134 14 C -0.042 4.042 15 C -0.099 4.099 16 C -0.062 4.062 17 O -0.533 6.533 18 Si 0.730 3.270 19 C 0.125 3.875 20 N -0.518 5.518 21 C 0.025 3.975 22 C 0.023 3.977 23 C -0.154 4.154 24 C -0.071 4.071 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.401 0.599 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.364 0.636 35 H -0.250 1.250 36 H -0.252 1.252 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.088 0.912 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 -2.941 -5.341 6.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.390 6.390 5 C -0.133 4.133 6 H 0.142 0.858 7 C -0.162 4.162 8 C 0.017 3.983 9 H 0.136 0.864 10 N -0.363 5.363 11 C 0.352 3.648 12 O -0.400 6.400 13 C -0.137 4.137 14 C -0.060 4.060 15 C -0.100 4.100 16 C -0.172 4.172 17 O -0.339 6.339 18 Si 0.629 3.371 19 C 0.031 3.969 20 N -0.239 5.239 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.174 4.174 24 C -0.091 4.091 25 C -0.171 4.171 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.237 0.763 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.212 0.788 35 H -0.175 1.175 36 H -0.177 1.177 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.106 0.894 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.581 -2.426 -2.779 3.734 hybrid contribution -0.628 -1.407 -2.725 3.131 sum -1.210 -3.833 -5.504 6.815 Atomic orbital electron populations 1.23327 0.75931 1.04005 1.02741 1.86520 1.23746 1.33360 1.83803 1.23559 0.91659 0.81437 0.72138 1.90691 1.66958 1.36419 1.44966 1.22660 0.87680 1.01059 1.01862 0.85828 1.23370 0.96998 0.94786 1.01083 1.21813 0.83368 0.96423 0.96687 0.86436 1.45581 1.07414 1.64831 1.18522 1.18136 0.82883 0.78069 0.85700 1.90830 1.85784 1.45688 1.17702 1.19847 0.93880 1.04650 0.95299 1.21043 0.90415 0.94929 0.99662 1.20260 0.96290 0.99459 0.93991 1.25289 0.88278 0.93922 1.09671 1.86740 1.70181 1.47695 1.29246 0.92901 0.82749 0.89501 0.71939 1.18852 0.89125 0.95824 0.93105 1.59474 1.32334 1.03863 1.28231 1.22504 1.01696 0.86859 1.01060 1.22554 1.01154 0.98099 0.90530 1.21581 0.93032 1.01988 1.00757 1.21143 0.98515 0.95995 0.93420 1.23408 0.97824 1.01246 0.94582 0.91745 0.87869 0.91699 0.86789 0.89547 0.76338 0.83577 0.90163 0.78752 1.17470 1.17708 0.94587 0.90281 0.90938 0.90655 0.90174 0.94539 0.85243 0.85353 0.89371 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.35 10.57 -39.27 -0.41 -0.76 16 3 C 0.47 0.55 7.49 36.01 0.27 0.82 16 4 O -0.50 -2.04 15.65 -18.75 -0.29 -2.33 16 5 C -0.11 0.22 4.13 -90.96 -0.38 -0.15 16 6 H 0.12 -0.50 8.14 -51.93 -0.42 -0.92 16 7 C -0.12 0.27 7.15 -25.92 -0.19 0.09 16 8 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 9 H 0.12 -0.01 7.46 -51.93 -0.39 -0.40 16 10 N -0.71 1.33 5.21 -54.06 -0.28 1.05 16 11 C 0.56 0.65 7.76 -12.48 -0.10 0.55 16 12 O -0.52 -2.45 15.94 5.29 0.08 -2.37 16 13 C -0.13 -0.03 5.88 -104.95 -0.62 -0.65 16 14 C -0.04 -0.05 8.19 -39.23 -0.32 -0.37 16 15 C -0.10 -0.09 5.28 -104.49 -0.55 -0.64 16 16 C -0.06 -0.08 2.29 36.00 0.08 0.00 16 17 O -0.53 -1.03 12.65 -35.23 -0.45 -1.47 16 18 Si 0.73 1.04 30.17 -169.99 -5.13 -4.09 16 19 C 0.13 -0.04 4.66 -83.86 -0.39 -0.43 16 20 N -0.52 0.64 3.69 -186.86 -0.69 -0.05 16 21 C 0.03 -0.05 9.33 60.07 0.56 0.51 16 22 C 0.02 -0.06 9.08 60.07 0.55 0.48 16 23 C -0.15 0.24 8.53 -39.45 -0.34 -0.09 16 24 C -0.07 0.14 9.53 -39.23 -0.37 -0.23 16 25 C -0.13 0.24 7.43 -25.92 -0.19 0.05 16 26 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 27 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 28 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 29 H 0.11 -0.11 7.44 -51.93 -0.39 -0.50 16 30 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.40 -1.83 6.72 -40.82 -0.27 -2.10 16 32 H 0.15 0.16 4.70 -52.48 -0.25 -0.08 16 33 H 0.08 0.11 7.78 -51.92 -0.40 -0.30 16 34 H 0.36 -0.03 7.43 45.56 0.34 0.30 16 35 H -0.25 -0.73 7.11 56.52 0.40 -0.33 16 36 H -0.25 -0.99 7.11 56.52 0.40 -0.59 16 37 H 0.04 -0.10 7.08 -51.93 -0.37 -0.47 16 38 H 0.08 -0.23 8.12 -51.93 -0.42 -0.65 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 40 H 0.07 -0.21 7.40 -51.93 -0.38 -0.59 16 41 H 0.08 -0.27 8.12 -51.93 -0.42 -0.70 16 42 H 0.04 -0.11 7.33 -51.93 -0.38 -0.49 16 43 H 0.13 -0.40 6.99 -52.49 -0.37 -0.77 16 44 H 0.13 -0.64 6.39 -52.49 -0.34 -0.98 16 45 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 46 H 0.10 -0.15 8.10 -51.93 -0.42 -0.58 16 LS Contribution 377.74 15.07 5.69 5.69 Total: 0.00 -8.18 377.74 -9.30 -17.47 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: -6.61 Total: -13.63 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.21 Total: 0.49 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -0.97 Total: 1.01 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -1.07 Total: -6.94 kcal Atomic # 14 Polarization: 1.04 SS G_CDS: -5.13 Total: -4.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -8.18 -9.30 -17.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13422196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.541 kcal (2) G-P(sol) polarization free energy of solvation -8.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds