Wall clock time and date at job start Sat Mar 6 2021 16:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99771 * 2 1 4 4 O 1.20825 * 120.00041 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.08998 * 112.84638 * 48.80017 * 5 3 2 7 7 C 1.53777 * 113.61313 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.08192 * 140.06331 * 7 5 3 9 9 H 1.08997 * 113.61612 * 219.93452 * 8 7 5 10 10 N 1.46505 * 113.61379 * 89.11293 * 8 7 5 11 11 C 1.34774 * 119.99855 * 155.00150 * 10 8 7 12 12 O 1.21592 * 120.00422 * 0.02562 * 11 10 8 13 13 C 1.47523 * 119.99873 * 179.97438 * 11 10 8 14 14 C 1.39773 * 120.06882 * 180.02562 * 13 11 10 15 15 C 1.37633 * 119.93149 * 179.97438 * 14 13 11 16 16 C 1.50696 * 119.96370 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47131 * 254.99412 * 16 15 14 18 18 Si 1.86292 * 109.47450 * 14.99748 * 16 15 14 19 19 C 1.39193 * 120.06610 * 0.25160 * 15 14 13 20 20 N 1.39053 * 119.92789 * 179.72312 * 19 15 14 21 21 C 1.46904 * 110.99497 * 120.00092 * 20 19 15 22 22 C 1.46904 * 110.99957 * 243.95040 * 20 19 15 23 23 C 1.39240 * 120.14026 * 359.48808 * 19 15 14 24 24 C 1.37590 * 120.07004 * 0.51536 * 23 19 15 25 25 C 1.53780 * 87.08252 * 334.56537 * 8 7 5 26 26 H 1.09002 * 109.46817 * 60.00595 * 1 2 3 27 27 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47246 * 300.00393 * 1 2 3 29 29 H 1.08994 * 113.61644 * 25.51441 * 7 5 3 30 30 H 1.09005 * 113.68690 * 254.61928 * 7 5 3 31 31 H 0.97004 * 120.00064 * 334.99957 * 10 8 7 32 32 H 1.08006 * 120.03507 * 359.97438 * 14 13 11 33 33 H 1.09008 * 109.47144 * 135.00183 * 16 15 14 34 34 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 35 35 H 1.48500 * 110.00207 * 59.99993 * 18 16 15 36 36 H 1.48510 * 110.00345 * 181.31868 * 18 16 15 37 37 H 1.08996 * 109.47559 * 60.00507 * 21 20 19 38 38 H 1.09006 * 109.46908 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47256 * 299.99670 * 21 20 19 40 40 H 1.08995 * 109.46601 * 60.00520 * 22 20 19 41 41 H 1.08999 * 109.46565 * 179.97438 * 22 20 19 42 42 H 1.08999 * 109.47202 * 300.00405 * 22 20 19 43 43 H 1.08001 * 119.96848 * 180.27723 * 23 19 15 44 44 H 1.07995 * 120.03877 * 179.71866 * 24 23 19 45 45 H 1.09002 * 113.61671 * 139.97935 * 25 8 7 46 46 H 1.09002 * 113.61471 * 270.88533 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0239 0.6363 -0.7549 7 6 4.1076 2.7143 0.0011 8 6 5.1819 2.2263 0.9873 9 1 5.3988 2.9378 1.7841 10 7 6.3907 1.7179 0.3340 11 6 7.5676 1.7306 0.9906 12 8 7.6262 2.1637 2.1253 13 6 8.7847 1.2182 0.3330 14 6 10.0059 1.2302 1.0128 15 6 11.1395 0.7509 0.3968 16 6 12.4567 0.7641 1.1288 17 8 13.2771 1.8149 0.6142 18 14 12.1548 1.0449 2.9455 19 6 11.0716 0.2594 -0.9037 20 7 12.2198 -0.2189 -1.5254 21 6 12.0659 -1.6308 -1.9009 22 6 12.5667 0.6017 -2.6934 23 6 9.8556 0.2410 -1.5816 24 6 8.7188 0.7188 -0.9713 25 6 4.1925 1.1227 1.3969 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.4176 3.4402 0.4312 30 1 4.5100 3.0313 -0.9611 31 1 6.3439 1.3720 -0.5710 32 1 10.0600 1.6153 2.0205 33 1 12.9604 -0.1923 0.9877 34 1 13.4755 1.7332 -0.3287 35 1 11.3027 -0.0413 3.4927 36 1 13.4480 1.0918 3.6741 37 1 11.2270 -1.7344 -2.5890 38 1 12.9783 -1.9796 -2.3847 39 1 11.8786 -2.2261 -1.0072 40 1 12.7435 1.6293 -2.3759 41 1 13.4686 0.2059 -3.1605 42 1 11.7459 0.5790 -3.4102 43 1 9.8052 -0.1452 -2.5890 44 1 7.7767 0.7085 -1.4992 45 1 4.6631 0.1532 1.5610 46 1 3.5256 1.4134 2.2086 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_13422196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:04:09 Heat of formation + Delta-G solvation = -76.683183 kcal Electronic energy + Delta-G solvation = -28893.765675 eV Core-core repulsion = 24751.693957 eV Total energy + Delta-G solvation = -4142.071718 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12166 -41.60403 -40.66341 -39.19057 -37.68365 -37.46531 -37.26922 -34.59453 -32.69263 -31.30761 -29.40725 -28.58057 -27.23726 -26.91570 -26.83209 -25.85739 -23.49916 -22.97462 -22.46180 -21.30875 -20.46714 -19.26740 -18.75248 -18.01766 -17.99174 -17.63834 -17.40714 -17.33402 -16.61249 -16.40904 -16.06579 -15.94626 -15.67071 -15.32583 -15.15377 -15.05108 -14.84413 -14.52869 -14.28142 -14.18523 -13.94440 -13.75091 -13.51891 -13.43198 -13.15795 -13.03772 -12.99479 -12.84832 -12.71653 -12.61788 -12.19412 -11.87458 -11.82476 -11.75541 -11.40051 -11.37490 -11.28743 -11.04217 -10.25286 -10.07513 -9.78749 -9.61020 -4.91440 -0.39541 0.16997 1.06761 1.33752 1.54803 1.66309 1.72949 1.87507 1.95392 2.63145 2.74071 3.23441 3.32943 3.51285 3.59024 3.70081 3.73120 3.76782 3.91499 4.03398 4.07109 4.13453 4.20472 4.25545 4.28019 4.35875 4.41227 4.45451 4.50128 4.58584 4.64186 4.66327 4.68196 4.69719 4.78478 4.81631 4.89829 4.94774 4.98589 4.99266 5.04535 5.15108 5.22960 5.34672 5.45652 5.55474 5.77087 6.21140 6.42892 6.64270 6.65294 7.11378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.467 3.533 4 O -0.538 6.538 5 C -0.105 4.105 6 H 0.154 0.846 7 C -0.117 4.117 8 C 0.123 3.877 9 H 0.099 0.901 10 N -0.693 5.693 11 C 0.563 3.437 12 O -0.569 6.569 13 C -0.145 4.145 14 C -0.059 4.059 15 C -0.114 4.114 16 C -0.058 4.058 17 O -0.545 6.545 18 Si 0.773 3.227 19 C 0.125 3.875 20 N -0.529 5.529 21 C 0.025 3.975 22 C 0.023 3.977 23 C -0.152 4.152 24 C -0.057 4.057 25 C -0.129 4.129 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.373 0.627 35 H -0.273 1.273 36 H -0.288 1.288 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.152 0.848 44 H 0.164 0.836 45 H 0.092 0.908 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 -3.864 -7.828 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.312 3.688 4 O -0.428 6.428 5 C -0.124 4.124 6 H 0.172 0.828 7 C -0.155 4.155 8 C 0.017 3.983 9 H 0.117 0.883 10 N -0.346 5.346 11 C 0.352 3.648 12 O -0.449 6.449 13 C -0.148 4.148 14 C -0.078 4.078 15 C -0.115 4.115 16 C -0.168 4.168 17 O -0.352 6.352 18 Si 0.676 3.324 19 C 0.031 3.969 20 N -0.251 5.251 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.172 4.172 24 C -0.076 4.076 25 C -0.168 4.168 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.256 0.744 32 H 0.154 0.846 33 H 0.097 0.903 34 H 0.223 0.777 35 H -0.199 1.199 36 H -0.215 1.215 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.169 0.831 44 H 0.182 0.818 45 H 0.110 0.890 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.017 -3.366 -5.314 6.372 hybrid contribution -0.517 -1.157 -1.949 2.325 sum -1.535 -4.522 -7.264 8.693 Atomic orbital electron populations 1.23513 0.75193 1.05529 1.02406 1.86523 1.24646 1.33288 1.83500 1.24164 0.92754 0.80951 0.70934 1.90677 1.67960 1.37465 1.46710 1.22806 0.85637 1.01614 1.02339 0.82841 1.23290 0.96142 0.94524 1.01531 1.21727 0.83524 0.96374 0.96687 0.88290 1.45404 1.06386 1.63790 1.18972 1.18336 0.83761 0.77502 0.85228 1.90811 1.86457 1.47905 1.19710 1.19835 0.93000 1.05646 0.96349 1.21079 0.91300 0.95723 0.99650 1.20177 0.95631 1.00851 0.94847 1.25145 0.88838 0.93570 1.09229 1.86699 1.70383 1.47981 1.30101 0.92268 0.79903 0.88578 0.71609 1.18978 0.90116 0.95167 0.92653 1.59450 1.32153 1.04444 1.29044 1.22523 1.02525 0.86183 1.00876 1.22589 1.01765 0.97815 0.90110 1.21828 0.92401 1.01458 1.01542 1.21477 0.99960 0.93921 0.92222 1.23372 0.97512 1.01212 0.94697 0.91960 0.85463 0.92218 0.88249 0.87725 0.74391 0.84555 0.90321 0.77739 1.19892 1.21540 0.93536 0.89569 0.91897 0.90847 0.89435 0.93767 0.83059 0.81823 0.88952 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.52 10.57 -51.45 -0.54 -1.06 16 3 C 0.47 0.98 7.49 71.24 0.53 1.51 16 4 O -0.54 -4.69 15.65 21.97 0.34 -4.35 16 5 C -0.11 0.54 4.13 -11.01 -0.05 0.50 16 6 H 0.15 -1.71 8.14 -2.39 -0.02 -1.73 16 7 C -0.12 0.59 7.15 31.12 0.22 0.82 16 8 C 0.12 -0.40 4.32 45.52 0.20 -0.20 16 9 H 0.10 0.11 7.46 -2.39 -0.02 0.10 16 10 N -0.69 3.40 5.21 -443.21 -2.31 1.09 16 11 C 0.56 1.35 7.76 86.69 0.67 2.02 16 12 O -0.57 -6.26 15.94 -4.00 -0.06 -6.32 16 13 C -0.15 -0.01 5.88 -20.08 -0.12 -0.13 16 14 C -0.06 -0.19 8.19 22.50 0.18 -0.01 16 15 C -0.11 -0.25 5.28 -19.78 -0.10 -0.35 16 16 C -0.06 -0.22 2.29 71.23 0.16 -0.05 16 17 O -0.54 -2.52 12.65 -148.98 -1.89 -4.41 16 18 Si 0.77 3.91 30.17 68.60 2.07 5.98 16 19 C 0.13 -0.19 4.66 38.47 0.18 -0.01 16 20 N -0.53 1.80 3.69 -745.09 -2.75 -0.94 16 21 C 0.03 -0.14 9.33 127.69 1.19 1.05 16 22 C 0.02 -0.16 9.08 127.69 1.16 1.00 16 23 C -0.15 0.83 8.53 22.36 0.19 1.02 16 24 C -0.06 0.36 9.53 22.50 0.21 0.57 16 25 C -0.13 0.50 7.43 31.12 0.23 0.73 16 26 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 27 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 29 H 0.10 -0.14 7.44 -2.39 -0.02 -0.16 16 30 H 0.10 -0.89 8.14 -2.38 -0.02 -0.91 16 31 H 0.42 -4.97 6.72 -92.71 -0.62 -5.59 16 32 H 0.14 0.60 4.70 -2.91 -0.01 0.59 16 33 H 0.08 0.30 7.78 -2.38 -0.02 0.28 16 34 H 0.37 0.05 7.43 -74.06 -0.55 -0.50 16 35 H -0.27 -2.31 7.11 99.48 0.71 -1.60 16 36 H -0.29 -3.09 7.11 99.48 0.71 -2.39 16 37 H 0.05 -0.35 7.08 -2.39 -0.02 -0.37 16 38 H 0.09 -0.60 8.12 -2.38 -0.02 -0.62 16 39 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.07 -0.46 7.40 -2.39 -0.02 -0.48 16 41 H 0.09 -0.72 8.12 -2.39 -0.02 -0.74 16 42 H 0.04 -0.36 7.33 -2.39 -0.02 -0.38 16 43 H 0.15 -1.47 6.99 -2.91 -0.02 -1.49 16 44 H 0.16 -2.30 6.39 -2.91 -0.02 -2.32 16 45 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 Total: 0.00 -21.53 377.74 0.82 -20.72 By element: Atomic # 1 Polarization: -20.22 SS G_CDS: -0.11 Total: -20.34 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.07 Total: 9.63 kcal Atomic # 7 Polarization: 5.21 SS G_CDS: -5.06 Total: 0.15 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -2.15 Total: -16.14 kcal Atomic # 14 Polarization: 3.91 SS G_CDS: 2.07 Total: 5.98 kcal Total: -21.53 0.82 -20.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_13422196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.968 kcal (2) G-P(sol) polarization free energy of solvation -21.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds