Wall clock time and date at job start Sat Mar 6 2021 16:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34228 * 116.99998 * 2 1 4 4 O 1.20822 * 120.00365 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99585 * 180.02562 * 3 2 1 6 6 H 1.08996 * 112.85061 * 48.79963 * 5 3 2 7 7 C 1.53785 * 113.61001 * 179.97438 * 5 3 2 8 8 C 1.53787 * 87.07922 * 140.06426 * 7 5 3 9 9 H 1.08999 * 113.60941 * 219.93340 * 8 7 5 10 10 N 1.46497 * 113.61411 * 89.11348 * 8 7 5 11 11 C 1.34777 * 119.99525 * 156.52516 * 10 8 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 C 1.53542 * 109.82245 * 279.41101 * 13 11 10 15 15 C 1.53032 * 108.56418 * 179.57427 * 14 13 11 16 16 C 1.50208 * 110.36484 * 49.47520 * 15 14 13 17 17 C 1.50699 * 118.54725 * 160.01378 * 16 15 14 18 18 O 1.42897 * 109.47341 * 69.97920 * 17 16 15 19 19 Si 1.86305 * 109.46864 * 189.98209 * 17 16 15 20 20 C 1.31110 * 122.90047 * 339.99131 * 16 15 14 21 21 N 1.38925 * 121.85350 * 0.40586 * 20 16 15 22 22 C 1.53782 * 87.17311 * 334.52146 * 8 7 5 23 23 H 1.08999 * 109.47277 * 60.00424 * 1 2 3 24 24 H 1.09002 * 109.47662 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47373 * 300.00347 * 1 2 3 26 26 H 1.08995 * 113.61808 * 25.51372 * 7 5 3 27 27 H 1.09002 * 113.60904 * 254.61098 * 7 5 3 28 28 H 0.97000 * 120.00580 * 336.53261 * 10 8 7 29 29 H 1.08994 * 109.81687 * 40.27601 * 13 11 10 30 30 H 1.08994 * 109.62562 * 299.23602 * 14 13 11 31 31 H 1.09003 * 109.62118 * 59.79111 * 14 13 11 32 32 H 1.08999 * 109.27556 * 289.22209 * 15 14 13 33 33 H 1.09003 * 109.20320 * 169.68705 * 15 14 13 34 34 H 1.09004 * 109.47084 * 309.97776 * 17 16 15 35 35 H 0.96693 * 113.99820 * 59.99442 * 18 17 16 36 36 H 1.48497 * 109.99856 * 180.02562 * 19 17 16 37 37 H 1.48499 * 109.99626 * 301.31714 * 19 17 16 38 38 H 1.08002 * 119.07344 * 180.38009 * 20 16 15 39 39 H 0.97001 * 120.55983 * 166.66621 * 21 20 16 40 40 H 1.09000 * 113.61457 * 140.02206 * 22 8 7 41 41 H 1.08997 * 113.61654 * 270.92678 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 4.0233 0.6363 -0.7566 7 6 4.1078 2.7141 -0.0011 8 6 5.1828 2.2264 0.9845 9 1 5.4002 2.9383 1.7807 10 7 6.3909 1.7176 0.3306 11 6 7.5622 1.7021 0.9972 12 8 7.6160 2.1090 2.1385 13 6 8.8038 1.1730 0.3267 14 6 8.8139 -0.3613 0.3860 15 6 10.0789 -0.8674 -0.3109 16 6 11.2868 -0.1380 0.2040 17 6 12.6434 -0.7649 0.0104 18 8 12.9915 -0.7289 -1.3751 19 14 13.9111 0.1818 0.9941 20 6 11.2130 1.0202 0.8141 21 7 9.9978 1.6558 1.0360 22 6 4.1947 1.1229 1.3978 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 3.4181 3.4403 0.4291 27 1 4.5092 3.0292 -0.9643 28 1 6.3480 1.3919 -0.5821 29 1 8.8321 1.5029 -0.7117 30 1 8.8147 -0.6874 1.4260 31 1 7.9330 -0.7531 -0.1226 32 1 9.9885 -0.7028 -1.3846 33 1 10.1921 -1.9342 -0.1178 34 1 12.6175 -1.7998 0.3517 35 1 13.0334 0.1627 -1.7470 36 1 15.2535 -0.4261 0.8111 37 1 13.9337 1.6018 0.5601 38 1 12.1224 1.4932 1.1540 39 1 9.9379 2.4054 1.6487 40 1 4.6662 0.1541 1.5632 41 1 3.5288 1.4147 2.2098 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_15413834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:04:25 Heat of formation + Delta-G solvation = -100.882621 kcal Electronic energy + Delta-G solvation = -24059.732465 eV Core-core repulsion = 20328.601281 eV Total energy + Delta-G solvation = -3731.131184 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08928 -41.30315 -39.96160 -38.94746 -37.51214 -37.36470 -34.56704 -33.18474 -32.77595 -29.48038 -27.82425 -26.85139 -26.60523 -25.36499 -23.74619 -22.59892 -21.92978 -20.46500 -19.46313 -19.08744 -18.80207 -18.14185 -17.73082 -17.42664 -17.17423 -16.77541 -16.36317 -16.09227 -15.74434 -15.50856 -15.20026 -15.04274 -14.84426 -14.43497 -14.29755 -14.09890 -13.93945 -13.66391 -13.44787 -13.14465 -12.96647 -12.90001 -12.85351 -12.36924 -11.92893 -11.88202 -11.83584 -11.75802 -11.63374 -11.39153 -11.22303 -10.90175 -10.27976 -10.19730 -8.43476 -4.87803 1.06069 1.34779 1.42199 1.47106 1.57770 1.72489 1.83845 2.00131 2.65787 3.22829 3.31413 3.51228 3.59856 3.67258 3.76556 3.83422 3.91857 4.06558 4.08231 4.25327 4.27741 4.34369 4.48146 4.51071 4.63203 4.65970 4.67906 4.70469 4.75450 4.80737 4.82086 4.89130 4.98988 5.08152 5.29111 5.33242 5.34421 5.45983 5.61096 6.26140 6.45644 6.64792 6.66882 6.84509 7.10639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.540 6.540 5 C -0.105 4.105 6 H 0.155 0.845 7 C -0.118 4.118 8 C 0.125 3.875 9 H 0.095 0.905 10 N -0.693 5.693 11 C 0.518 3.482 12 O -0.568 6.568 13 C 0.138 3.862 14 C -0.121 4.121 15 C -0.052 4.052 16 C -0.282 4.282 17 C -0.054 4.054 18 O -0.556 6.556 19 Si 0.742 3.258 20 C 0.138 3.862 21 N -0.737 5.737 22 C -0.128 4.128 23 H 0.061 0.939 24 H 0.128 0.872 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.421 0.579 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.382 0.618 36 H -0.313 1.313 37 H -0.284 1.284 38 H 0.140 0.860 39 H 0.407 0.593 40 H 0.094 0.906 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -1.928 -1.911 3.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.124 4.124 6 H 0.172 0.828 7 C -0.156 4.156 8 C 0.019 3.981 9 H 0.113 0.887 10 N -0.346 5.346 11 C 0.305 3.695 12 O -0.446 6.446 13 C 0.029 3.971 14 C -0.159 4.159 15 C -0.089 4.089 16 C -0.292 4.292 17 C -0.165 4.165 18 O -0.364 6.364 19 Si 0.650 3.350 20 C 0.017 3.983 21 N -0.370 5.370 22 C -0.167 4.167 23 H 0.080 0.920 24 H 0.146 0.854 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.259 0.741 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.231 0.769 36 H -0.242 1.242 37 H -0.211 1.211 38 H 0.157 0.843 39 H 0.244 0.756 40 H 0.112 0.888 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.695 -1.569 -1.120 2.567 hybrid contribution -0.455 0.679 -1.170 1.427 sum -2.150 -0.890 -2.289 3.264 Atomic orbital electron populations 1.23513 0.75201 1.05558 1.02375 1.86521 1.24638 1.33279 1.83477 1.24196 0.92826 0.80943 0.70909 1.90676 1.68007 1.37495 1.46769 1.22860 0.85549 1.01567 1.02410 0.82755 1.23281 0.96217 0.94562 1.01521 1.21677 0.83748 0.96238 0.96465 0.88682 1.45473 1.06766 1.64160 1.18195 1.20857 0.85373 0.77224 0.86077 1.90741 1.86127 1.48354 1.19421 1.21111 0.83095 0.96100 0.96784 1.21856 1.00046 0.91809 1.02234 1.19950 0.90370 0.99312 0.99279 1.20912 0.96755 0.97477 1.14077 1.24824 0.98244 1.07017 0.86423 1.86544 1.91374 1.34158 1.24327 0.94458 0.75637 0.75496 0.89401 1.20585 0.88642 0.92509 0.96599 1.44386 1.04841 1.37463 1.50288 1.23403 0.97481 1.01284 0.94503 0.92007 0.85416 0.92231 0.88468 0.87792 0.74113 0.87198 0.91886 0.87921 0.91221 0.90879 0.87088 0.76941 1.24164 1.21099 0.84319 0.75626 0.88753 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.42 10.56 -51.39 -0.54 -0.97 16 3 C 0.47 0.83 7.49 71.24 0.53 1.37 16 4 O -0.54 -4.61 15.65 21.98 0.34 -4.26 16 5 C -0.11 0.62 4.15 -10.92 -0.05 0.57 16 6 H 0.15 -1.81 8.14 -2.39 -0.02 -1.83 16 7 C -0.12 0.69 7.15 31.12 0.22 0.91 16 8 C 0.12 -0.61 4.29 45.52 0.20 -0.41 16 9 H 0.10 -0.03 7.50 -2.39 -0.02 -0.05 16 10 N -0.69 5.34 5.26 -440.03 -2.32 3.02 16 11 C 0.52 -1.00 7.09 87.66 0.62 -0.38 16 12 O -0.57 -4.00 15.70 -3.04 -0.05 -4.05 16 13 C 0.14 -0.66 3.36 44.33 0.15 -0.52 16 14 C -0.12 0.67 5.48 30.79 0.17 0.84 16 15 C -0.05 0.18 5.85 29.70 0.17 0.35 16 16 C -0.28 0.45 5.37 -16.75 -0.09 0.36 16 17 C -0.05 0.02 2.81 71.24 0.20 0.22 16 18 O -0.56 -1.57 12.88 -148.98 -1.92 -3.48 16 19 Si 0.74 -0.56 29.97 68.60 2.06 1.49 16 20 C 0.14 -0.27 9.62 83.42 0.80 0.53 16 21 N -0.74 1.25 5.47 -329.01 -1.80 -0.54 16 22 C -0.13 0.65 7.45 31.22 0.23 0.88 16 23 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 24 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 25 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 26 H 0.10 -0.18 7.44 -2.39 -0.02 -0.20 16 27 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.42 -5.96 8.70 -92.71 -0.81 -6.76 16 29 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.11 -0.08 7.96 -2.38 -0.02 -0.10 16 35 H 0.38 -1.10 8.70 -74.06 -0.64 -1.74 16 36 H -0.31 -2.50 7.11 99.48 0.71 -1.79 16 37 H -0.28 -0.65 6.82 99.48 0.68 0.03 16 38 H 0.14 -0.52 4.31 -2.91 -0.01 -0.53 16 39 H 0.41 -0.28 8.10 -92.71 -0.75 -1.03 16 40 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H 0.09 -0.28 8.10 -2.39 -0.02 -0.29 16 Total: 0.00 -21.62 340.42 -0.98 -22.60 By element: Atomic # 1 Polarization: -18.56 SS G_CDS: -1.12 Total: -19.68 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 4.36 Total: 5.87 kcal Atomic # 7 Polarization: 6.59 SS G_CDS: -4.11 Total: 2.48 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -2.17 Total: -12.76 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: 2.06 Total: 1.49 kcal Total: -21.62 -0.98 -22.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_15413834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.279 kcal (2) G-P(sol) polarization free energy of solvation -21.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds