Wall clock time and date at job start Sat Mar 6 2021 16:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00300 * 2 1 4 4 O 1.20829 * 119.99892 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00191 * 180.02562 * 3 2 1 6 6 H 1.08996 * 112.85300 * 311.19552 * 5 3 2 7 7 C 1.54052 * 113.62381 * 82.50592 * 5 3 2 8 8 C 1.53777 * 86.98996 * 139.97468 * 7 5 3 9 9 H 1.08996 * 113.61708 * 219.97706 * 8 7 5 10 10 N 1.46508 * 113.60891 * 89.16378 * 8 7 5 11 11 C 1.34777 * 119.99997 * 105.86480 * 10 8 7 12 12 O 1.21284 * 119.99863 * 359.97438 * 11 10 8 13 13 C 1.50692 * 119.99847 * 179.97438 * 11 10 8 14 14 O 1.42905 * 109.47141 * 180.02562 * 13 11 10 15 15 C 1.35901 * 117.00063 * 180.02562 * 14 13 11 16 16 C 1.38713 * 120.05607 * 179.97438 * 15 14 13 17 17 N 1.48006 * 120.02492 * 0.25246 * 16 15 14 18 18 O 1.21798 * 119.99534 * 179.72459 * 17 16 15 19 19 O 1.21802 * 120.00044 * 359.72520 * 17 16 15 20 20 C 1.38165 * 119.94238 * 179.97438 * 16 15 14 21 21 C 1.38245 * 120.05717 * 0.02562 * 20 16 15 22 22 C 1.50702 * 119.94289 * 180.02562 * 21 20 16 23 23 O 1.42901 * 109.46896 * 299.99677 * 22 21 20 24 24 Si 1.86292 * 109.47009 * 179.97438 * 22 21 20 25 25 C 1.38285 * 120.11183 * 0.02562 * 21 20 16 26 26 C 1.38119 * 120.05478 * 359.97438 * 25 21 20 27 27 C 1.53783 * 87.17400 * 334.57326 * 8 7 5 28 28 H 1.08995 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46706 * 300.00235 * 1 2 3 30 30 H 1.09000 * 109.47122 * 59.99730 * 1 2 3 31 31 H 1.09009 * 113.60789 * 25.46862 * 7 5 3 32 32 H 1.08997 * 113.69794 * 254.49964 * 7 5 3 33 33 H 0.97002 * 119.99482 * 285.85753 * 10 8 7 34 34 H 1.09007 * 109.47135 * 60.00262 * 13 11 10 35 35 H 1.08998 * 109.47587 * 300.00060 * 13 11 10 36 36 H 1.07997 * 119.96892 * 179.97438 * 20 16 15 37 37 H 1.08998 * 109.47189 * 59.99312 * 22 21 20 38 38 H 0.96700 * 114.00065 * 179.97438 * 23 22 21 39 39 H 1.48502 * 110.00080 * 298.67673 * 24 22 21 40 40 H 1.48496 * 110.00216 * 59.99643 * 24 22 21 41 41 H 1.07998 * 119.97203 * 179.97438 * 25 21 20 42 42 H 1.08005 * 120.02406 * 179.97438 * 26 25 21 43 43 H 1.08998 * 113.61620 * 140.01878 * 27 8 7 44 44 H 1.08998 * 113.60942 * 270.92007 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0239 0.6361 0.7549 7 6 4.1919 1.1235 -1.4002 8 6 5.1807 2.2270 -0.9887 9 1 5.3965 2.9391 -1.7850 10 7 6.3903 1.7178 -0.3375 11 6 7.5602 1.7026 -1.0066 12 8 7.6115 2.1099 -2.1478 13 6 8.8045 1.1794 -0.3366 14 8 9.9061 1.2670 -1.2427 15 6 11.1121 0.8322 -0.7917 16 6 12.2243 0.8878 -1.6187 17 7 12.1001 1.4260 -2.9918 18 8 13.0781 1.4792 -3.7158 19 8 11.0198 1.8158 -3.3977 20 6 13.4494 0.4456 -1.1576 21 6 13.5671 -0.0524 0.1267 22 6 14.9047 -0.5335 0.6272 23 8 15.3674 -1.6016 -0.2018 24 14 14.7306 -1.1382 2.3806 25 6 12.4596 -0.1099 0.9527 26 6 11.2327 0.3309 0.4965 27 6 4.1078 2.7142 -0.0005 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.5241 1.4157 -2.2108 32 1 4.6630 0.1549 -1.5671 33 1 6.3492 1.3918 0.5751 34 1 8.6522 0.1391 -0.0488 35 1 9.0168 1.7747 0.5514 36 1 14.3155 0.4883 -1.8012 37 1 15.6211 0.2874 0.5957 38 1 16.2254 -1.9610 0.0622 39 1 14.2808 -0.0281 3.2585 40 1 13.7563 -2.2574 2.4376 41 1 12.5541 -0.4997 1.9555 42 1 10.3680 0.2854 1.1420 43 1 4.5112 3.0288 0.9619 44 1 3.4172 3.4405 -0.4291 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_4549638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:05:05 Heat of formation + Delta-G solvation = -118.809275 kcal Electronic energy + Delta-G solvation = -32380.255809 eV Core-core repulsion = 27463.159888 eV Total energy + Delta-G solvation = -4917.095921 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.128 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.36344 -42.12984 -41.77353 -40.89599 -39.72379 -38.91916 -37.63651 -37.48911 -37.37115 -34.57853 -33.61238 -32.42365 -30.29590 -29.20395 -27.90094 -26.99176 -26.87643 -26.42762 -24.28209 -22.94746 -22.56359 -22.01140 -20.59304 -20.42779 -19.85156 -19.21803 -19.06647 -18.72573 -18.50753 -18.29501 -17.92618 -17.62806 -17.51046 -17.33491 -16.93341 -16.51203 -15.98721 -15.90696 -15.72738 -15.31247 -15.12230 -14.89115 -14.50380 -14.36437 -14.23432 -13.99193 -13.83955 -13.70191 -13.48302 -13.18290 -13.01842 -12.89340 -12.75054 -12.70633 -12.41664 -12.31339 -12.20757 -11.96397 -11.91181 -11.86594 -11.78654 -11.42165 -11.11726 -10.96739 -10.42111 -10.26880 -9.83602 -4.88186 -1.39741 -0.34803 0.06217 0.26679 1.03643 1.10120 1.28406 1.37458 1.69238 1.70618 1.91251 1.93044 2.20619 2.98849 3.08308 3.19533 3.25524 3.28107 3.46091 3.50334 3.54984 3.63177 3.74038 3.83535 3.94548 3.95103 4.03820 4.14935 4.23542 4.24985 4.25906 4.41350 4.45238 4.50275 4.60196 4.65099 4.67631 4.70850 4.77066 4.85536 4.95667 4.96352 5.11972 5.32408 5.39917 5.65113 6.36981 6.38892 6.62638 6.86546 7.08635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.539 6.539 5 C -0.103 4.103 6 H 0.159 0.841 7 C -0.131 4.131 8 C 0.123 3.877 9 H 0.090 0.910 10 N -0.689 5.689 11 C 0.514 3.486 12 O -0.560 6.560 13 C 0.022 3.978 14 O -0.288 6.288 15 C 0.195 3.805 16 C -0.101 4.101 17 N 0.034 4.966 18 O -0.193 6.193 19 O -0.170 6.170 20 C 0.001 3.999 21 C -0.118 4.118 22 C -0.088 4.088 23 O -0.568 6.568 24 Si 0.778 3.222 25 C -0.027 4.027 26 C -0.188 4.188 27 C -0.115 4.115 28 H 0.128 0.872 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.425 0.575 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.407 0.593 39 H -0.270 1.270 40 H -0.281 1.281 41 H 0.163 0.837 42 H 0.205 0.795 43 H 0.109 0.891 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -6.428 14.856 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.121 4.121 6 H 0.177 0.823 7 C -0.169 4.169 8 C 0.018 3.982 9 H 0.109 0.891 10 N -0.344 5.344 11 C 0.300 3.700 12 O -0.436 6.436 13 C -0.054 4.054 14 O -0.198 6.198 15 C 0.145 3.855 16 C -0.186 4.186 17 N 0.546 4.454 18 O -0.402 6.402 19 O -0.384 6.384 20 C -0.018 4.018 21 C -0.119 4.119 22 C -0.196 4.196 23 O -0.379 6.379 24 Si 0.680 3.320 25 C -0.045 4.045 26 C -0.206 4.206 27 C -0.153 4.153 28 H 0.146 0.854 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.264 0.736 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.116 0.884 38 H 0.259 0.741 39 H -0.196 1.196 40 H -0.208 1.208 41 H 0.180 0.820 42 H 0.222 0.778 43 H 0.127 0.873 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.404 -6.010 14.823 16.056 hybrid contribution -0.764 0.578 -1.080 1.444 sum 0.640 -5.432 13.743 14.791 Atomic orbital electron populations 1.23515 0.75178 1.05568 1.02392 1.86516 1.24662 1.33293 1.83488 1.24202 0.92848 0.80946 0.70937 1.90681 1.68008 1.37496 1.46719 1.22863 0.85544 1.01570 1.02144 0.82306 1.23415 0.97544 1.01225 0.94765 1.21680 0.83604 0.96288 0.96672 0.89142 1.45241 1.06114 1.64781 1.18276 1.20415 0.85136 0.78249 0.86227 1.90866 1.85921 1.46995 1.19867 1.23144 0.82676 1.06683 0.92929 1.86472 1.14725 1.76988 1.41582 1.18838 0.83932 0.90522 0.92213 1.20872 0.97178 1.17245 0.83304 1.43798 1.00111 0.98206 1.03334 1.94499 1.29642 1.60981 1.55108 1.94681 1.14819 1.50068 1.78846 1.20877 0.94576 0.90056 0.96270 1.19690 0.96969 1.02204 0.93014 1.25024 0.93162 0.94191 1.07256 1.86444 1.43279 1.51106 1.57036 0.93421 0.87861 0.78717 0.71960 1.21491 0.91188 0.91971 0.99836 1.21694 1.01572 1.04220 0.93150 1.23272 0.95948 0.94569 1.01499 0.85400 0.91901 0.92318 0.89319 0.88818 0.73566 0.83827 0.83766 0.82227 0.88426 0.74090 1.19611 1.20803 0.82044 0.77839 0.87266 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.47 10.56 -51.37 -0.54 -1.02 16 3 C 0.47 0.89 7.49 71.24 0.53 1.42 16 4 O -0.54 -4.73 15.65 21.96 0.34 -4.38 16 5 C -0.10 0.61 4.15 -10.92 -0.05 0.56 16 6 H 0.16 -2.04 8.14 -2.39 -0.02 -2.06 16 7 C -0.13 0.51 7.45 31.21 0.23 0.74 16 8 C 0.12 -0.45 4.30 45.52 0.20 -0.25 16 9 H 0.09 0.22 7.50 -2.39 -0.02 0.20 16 10 N -0.69 5.44 5.26 -440.03 -2.32 3.13 16 11 C 0.51 0.00 7.91 87.65 0.69 0.70 16 12 O -0.56 -7.79 16.12 15.99 0.26 -7.53 16 13 C 0.02 -0.16 5.22 71.23 0.37 0.21 16 14 O -0.29 -1.50 7.68 -63.41 -0.49 -1.99 16 15 C 0.19 0.54 6.67 22.51 0.15 0.69 16 16 C -0.10 -0.89 6.87 36.47 0.25 -0.64 16 17 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16 18 O -0.19 -3.58 18.45 18.89 0.35 -3.23 16 19 O -0.17 -3.72 17.24 25.61 0.44 -3.28 16 20 C 0.00 0.01 9.11 22.25 0.20 0.21 16 21 C -0.12 0.16 5.42 -19.85 -0.11 0.05 16 22 C -0.09 0.57 2.81 71.24 0.20 0.77 16 23 O -0.57 2.55 12.74 -148.98 -1.90 0.65 16 24 Si 0.78 -8.02 29.78 68.60 2.04 -5.97 16 25 C -0.03 0.15 8.66 22.25 0.19 0.34 16 26 C -0.19 1.24 9.04 22.36 0.20 1.45 16 27 C -0.11 0.66 7.15 31.12 0.22 0.88 16 28 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.06 -0.09 8.13 -2.38 -0.02 -0.11 16 30 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 31 H 0.09 -0.12 8.10 -2.38 -0.02 -0.13 16 32 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.43 -7.23 8.70 -92.71 -0.81 -8.04 16 34 H 0.14 -2.25 7.66 -2.38 -0.02 -2.27 16 35 H 0.14 -2.28 7.66 -2.39 -0.02 -2.30 16 36 H 0.16 0.69 7.61 -2.91 -0.02 0.67 16 37 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16 38 H 0.41 -5.97 8.74 -74.06 -0.65 -6.62 16 39 H -0.27 1.90 7.11 99.48 0.71 2.61 16 40 H -0.28 1.27 7.11 99.48 0.71 1.97 16 41 H 0.16 -1.57 4.87 -2.91 -0.01 -1.59 16 42 H 0.20 -3.47 6.30 -2.91 -0.02 -3.49 16 43 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 44 H 0.10 -0.12 7.43 -2.39 -0.02 -0.14 16 Total: 0.00 -41.98 386.34 2.15 -39.83 By element: Atomic # 1 Polarization: -24.54 SS G_CDS: -0.32 Total: -24.86 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 4.49 Total: 8.28 kcal Atomic # 7 Polarization: 6.02 SS G_CDS: -2.52 Total: 3.50 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.54 Total: -20.78 kcal Atomic # 14 Polarization: -8.02 SS G_CDS: 2.04 Total: -5.97 kcal Total: -41.98 2.15 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_4549638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.982 kcal (2) G-P(sol) polarization free energy of solvation -41.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds