Wall clock time and date at job start Sat Mar 6 2021 16:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99859 * 2 1 4 4 O 1.20825 * 119.99808 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99917 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85417 * 48.80142 * 5 3 2 7 7 C 1.53781 * 113.61342 * 179.97438 * 5 3 2 8 8 C 1.53786 * 87.17350 * 140.02323 * 7 5 3 9 9 H 1.09000 * 113.61138 * 220.06261 * 8 7 5 10 10 N 1.46496 * 113.61518 * 89.15486 * 8 7 5 11 11 C 1.34779 * 119.99390 * 154.99856 * 10 8 7 12 12 O 1.21631 * 120.00390 * 0.02562 * 11 10 8 13 13 C 1.47197 * 119.99353 * 180.02562 * 11 10 8 14 14 C 1.36009 * 123.46308 * 359.70789 * 13 11 10 15 15 S 1.70451 * 110.81595 * 179.89109 * 14 13 11 16 16 C 1.75507 * 92.44396 * 0.31710 * 15 14 13 17 17 C 1.50701 * 124.71096 * 179.85376 * 16 15 14 18 18 O 1.42904 * 109.47211 * 244.96271 * 17 16 15 19 19 Si 1.86299 * 109.47123 * 4.95822 * 17 16 15 20 20 C 1.32769 * 110.57444 * 359.81977 * 16 15 14 21 21 C 1.53782 * 113.68885 * 277.53363 * 5 3 2 22 22 H 1.08993 * 109.47104 * 60.00411 * 1 2 3 23 23 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47162 * 300.00144 * 1 2 3 25 25 H 1.09002 * 113.61445 * 254.61323 * 7 5 3 26 26 H 1.09002 * 113.61408 * 25.43053 * 7 5 3 27 27 H 0.97001 * 120.00117 * 335.00621 * 10 8 7 28 28 H 1.07998 * 124.58792 * 359.97438 * 14 13 11 29 29 H 1.08998 * 109.47074 * 124.96176 * 17 16 15 30 30 H 0.96690 * 114.00149 * 180.02562 * 18 17 16 31 31 H 1.48498 * 110.00253 * 300.00228 * 19 17 16 32 32 H 1.48502 * 109.99688 * 61.31846 * 19 17 16 33 33 H 1.07999 * 123.45323 * 179.97438 * 20 16 15 34 34 H 1.08997 * 113.61668 * 334.55405 * 21 5 3 35 35 H 1.08998 * 113.61674 * 105.37914 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0234 0.6366 -0.7566 7 6 4.1077 2.7143 -0.0011 8 6 5.1830 2.2292 0.9854 9 1 5.3978 2.9414 1.7821 10 7 6.3924 1.7220 0.3326 11 6 7.5695 1.7376 0.9890 12 8 7.6275 2.1722 2.1235 13 6 8.7848 1.2285 0.3328 14 6 8.7995 0.7221 -0.9295 15 16 10.3720 0.2309 -1.3668 16 6 11.0340 0.7067 0.1874 17 6 12.4811 0.5648 0.5836 18 8 12.5912 -0.3704 1.6585 19 14 13.4669 -0.0462 -0.8743 20 6 10.0829 1.2097 0.9654 21 6 4.1935 1.1226 1.3952 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 4.5091 3.0294 -0.9643 26 1 3.4173 3.4406 0.4278 27 1 6.3461 1.3751 -0.5721 28 1 7.9324 0.6434 -1.5686 29 1 12.8669 1.5328 0.9031 30 1 13.4970 -0.5113 1.9660 31 1 12.9507 -1.3655 -1.3196 32 1 13.3865 0.9328 -1.9880 33 1 10.2617 1.5677 1.9685 34 1 3.5273 1.4134 2.2074 35 1 4.6630 0.1527 1.5595 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12121848_6894386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 16:05:46 Heat of formation + Delta-G solvation = -86.583243 kcal Electronic energy + Delta-G solvation = -21101.007718 eV Core-core repulsion = 17579.697716 eV Total energy + Delta-G solvation = -3521.310002 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10965 -41.12645 -39.50884 -38.54779 -37.49165 -37.16751 -34.58737 -31.90165 -29.46199 -27.29411 -26.98334 -26.88988 -25.50538 -22.64880 -22.13258 -20.63770 -20.53153 -19.00979 -18.63676 -18.38062 -18.26130 -17.80735 -17.44506 -16.90447 -16.28617 -16.21212 -15.80245 -15.41384 -15.11084 -14.76314 -14.35155 -14.31724 -14.01414 -13.92502 -13.81704 -13.64751 -13.48575 -13.18201 -12.89457 -12.67020 -12.38046 -12.08878 -11.91706 -11.87261 -11.80807 -11.43388 -11.18356 -10.45100 -10.30629 -10.02999 -9.60903 -5.17934 -0.44755 0.29292 0.63637 0.73914 1.02735 1.20687 1.61283 1.68774 1.88320 1.93300 2.15547 3.17384 3.27236 3.33847 3.60519 3.70620 3.71786 3.80217 3.95695 4.01406 4.18840 4.23048 4.25731 4.42754 4.43796 4.58728 4.61548 4.64460 4.67070 4.74449 4.83778 4.90130 4.96113 5.07657 5.30811 5.40164 6.35553 6.61428 6.85153 7.04715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.468 3.532 4 O -0.538 6.538 5 C -0.105 4.105 6 H 0.153 0.847 7 C -0.116 4.116 8 C 0.122 3.878 9 H 0.097 0.903 10 N -0.692 5.692 11 C 0.583 3.417 12 O -0.575 6.575 13 C -0.178 4.178 14 C -0.181 4.181 15 S 0.184 5.816 16 C -0.212 4.212 17 C -0.050 4.050 18 O -0.564 6.564 19 Si 0.758 3.242 20 C -0.070 4.070 21 C -0.129 4.129 22 H 0.062 0.938 23 H 0.128 0.872 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.417 0.583 28 H 0.210 0.790 29 H 0.100 0.900 30 H 0.406 0.594 31 H -0.270 1.270 32 H -0.264 1.264 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -3.105 -4.698 6.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.124 4.124 6 H 0.170 0.830 7 C -0.154 4.154 8 C 0.016 3.984 9 H 0.116 0.884 10 N -0.344 5.344 11 C 0.370 3.630 12 O -0.455 6.455 13 C -0.196 4.196 14 C -0.318 4.318 15 S 0.449 5.551 16 C -0.328 4.328 17 C -0.161 4.161 18 O -0.375 6.375 19 Si 0.659 3.341 20 C -0.099 4.099 21 C -0.168 4.168 22 H 0.081 0.919 23 H 0.146 0.854 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.255 0.745 28 H 0.226 0.774 29 H 0.118 0.882 30 H 0.257 0.743 31 H -0.196 1.196 32 H -0.189 1.189 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.814 -3.415 -6.124 7.982 hybrid contribution -1.645 0.850 1.364 2.300 sum 2.169 -2.564 -4.760 5.825 Atomic orbital electron populations 1.23523 0.75098 1.05581 1.02445 1.86523 1.24730 1.33221 1.83476 1.24099 0.92647 0.80992 0.70966 1.90675 1.67914 1.37442 1.46691 1.22776 0.85810 1.01535 1.02238 0.82957 1.23287 0.96044 0.94610 1.01430 1.21780 0.83423 0.96457 0.96721 0.88450 1.45330 1.06279 1.63868 1.18935 1.17749 0.83164 0.77166 0.84880 1.90804 1.86519 1.48313 1.19892 1.20124 0.94332 1.09510 0.95587 1.26164 1.04643 1.01904 0.99135 1.83236 0.98883 1.59050 1.13889 1.23788 1.00076 1.09730 0.99180 1.24304 0.93419 0.97711 1.00691 1.86468 1.35617 1.63052 1.52314 0.93598 0.87568 0.78522 0.74402 1.21073 0.90048 0.98422 1.00377 1.23404 0.97467 1.01074 0.94812 0.91916 0.85411 0.92173 0.87784 0.88070 0.74512 0.77353 0.88246 0.74270 1.19591 1.18932 0.83928 0.88731 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.92 10.57 -51.43 -0.54 -1.47 16 3 C 0.47 1.56 7.49 71.24 0.53 2.09 16 4 O -0.54 -5.23 15.65 21.97 0.34 -4.89 16 5 C -0.10 0.37 4.14 -11.01 -0.05 0.32 16 6 H 0.15 -1.41 8.14 -2.39 -0.02 -1.43 16 7 C -0.12 0.39 7.15 31.12 0.22 0.61 16 8 C 0.12 -0.11 4.33 45.59 0.20 0.08 16 9 H 0.10 0.35 7.47 -2.39 -0.02 0.33 16 10 N -0.69 1.33 5.23 -443.16 -2.32 -0.99 16 11 C 0.58 3.58 7.79 86.60 0.67 4.26 16 12 O -0.57 -8.73 16.40 -4.13 -0.07 -8.80 16 13 C -0.18 -0.71 5.98 -19.87 -0.12 -0.83 16 14 C -0.18 0.40 10.38 67.30 0.70 1.10 16 15 S 0.18 0.06 20.20 -56.49 -1.14 -1.08 16 16 C -0.21 -0.79 5.69 24.51 0.14 -0.65 16 17 C -0.05 0.06 2.93 71.24 0.21 0.27 16 18 O -0.56 0.12 12.86 -148.98 -1.92 -1.79 16 19 Si 0.76 -3.24 30.92 68.60 2.12 -1.12 16 20 C -0.07 -0.47 9.95 22.67 0.23 -0.25 16 21 C -0.13 0.25 7.44 31.20 0.23 0.48 16 22 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 23 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 24 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 25 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.10 0.00 7.44 -2.39 -0.02 -0.02 16 27 H 0.42 -3.77 7.20 -92.71 -0.67 -4.44 16 28 H 0.21 -2.27 7.01 -2.91 -0.02 -2.29 16 29 H 0.10 -0.46 7.96 -2.39 -0.02 -0.48 16 30 H 0.41 -4.50 8.74 -74.06 -0.65 -5.15 16 31 H -0.27 -0.46 7.11 99.48 0.71 0.24 16 32 H -0.26 0.05 7.11 99.48 0.71 0.76 16 33 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.09 -0.07 8.10 -2.39 -0.02 -0.09 16 35 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -25.17 320.66 0.51 -24.67 By element: Atomic # 1 Polarization: -13.05 SS G_CDS: -0.14 Total: -13.19 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.17 Total: 8.65 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -2.32 Total: -0.99 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -2.18 Total: -16.95 kcal Atomic # 14 Polarization: -3.24 SS G_CDS: 2.12 Total: -1.12 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.14 Total: -1.08 kcal Total: -25.17 0.51 -24.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12121848_6894386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.916 kcal (2) G-P(sol) polarization free energy of solvation -25.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds