Wall clock time and date at job start Sat Mar 6 2021 19:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47058 * 2 1 4 4 C 1.35895 * 117.00488 * 275.06490 * 3 2 1 5 5 C 1.38737 * 120.04980 * 5.46366 * 4 3 2 6 6 C 1.38153 * 119.94245 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.05132 * 0.27297 * 6 5 4 8 8 C 1.50708 * 119.94062 * 179.69981 * 7 6 5 9 9 O 1.42904 * 109.46422 * 65.00338 * 8 7 6 10 10 Si 1.86295 * 109.47133 * 184.99978 * 8 7 6 11 11 C 1.38266 * 120.11301 * 359.45173 * 7 6 5 12 12 C 1.38139 * 120.05565 * 0.54702 * 11 7 6 13 13 C 1.50694 * 109.47203 * 120.00034 * 2 1 3 14 14 O 1.21283 * 120.00237 * 244.99854 * 13 2 1 15 15 N 1.34776 * 120.00152 * 64.99896 * 13 2 1 16 16 C 1.46497 * 120.00366 * 179.97438 * 15 13 2 17 17 H 1.09005 * 112.84801 * 23.80817 * 16 15 13 18 18 C 1.53788 * 113.61389 * 155.00122 * 16 15 13 19 19 C 1.53780 * 87.07845 * 139.98592 * 18 16 15 20 20 H 1.09002 * 113.61052 * 220.01899 * 19 18 16 21 21 O 1.42903 * 113.61963 * 89.20246 * 19 18 16 22 22 C 1.53781 * 87.08395 * 334.56476 * 19 18 16 23 23 H 1.09001 * 109.47019 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46771 * 299.99974 * 1 2 3 25 25 H 1.08996 * 109.47078 * 59.99858 * 1 2 3 26 26 H 1.08999 * 109.46975 * 240.00508 * 2 1 3 27 27 H 1.08000 * 120.02989 * 359.97438 * 5 4 3 28 28 H 1.08001 * 119.97042 * 180.02562 * 6 5 4 29 29 H 1.08995 * 109.46956 * 305.00599 * 8 7 6 30 30 H 0.96700 * 114.00174 * 60.00304 * 9 8 7 31 31 H 1.48505 * 109.99881 * 58.68537 * 10 8 7 32 32 H 1.48494 * 110.00097 * 180.02562 * 10 8 7 33 33 H 1.08003 * 119.97087 * 180.25493 * 11 7 6 34 34 H 1.07998 * 120.02995 * 179.74763 * 12 11 7 35 35 H 0.97005 * 119.99686 * 0.02562 * 15 13 2 36 36 H 1.08994 * 113.61157 * 254.53084 * 18 16 15 37 37 H 1.08997 * 113.61464 * 25.35261 * 18 16 15 38 38 H 0.96693 * 114.00143 * 180.02562 * 21 19 18 39 39 H 1.08991 * 113.61762 * 270.88831 * 22 19 18 40 40 H 1.09005 * 113.61589 * 139.98033 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1112 1.9647 -1.2061 5 6 1.6573 1.3301 -2.3532 6 6 1.7655 1.9596 -3.5782 7 6 2.3308 3.2186 -3.6622 8 6 2.4538 3.9001 -5.0007 9 8 1.1498 4.1703 -5.5191 10 14 3.3858 5.5006 -4.7994 11 6 2.7788 3.8555 -2.5196 12 6 2.6728 3.2303 -1.2924 13 6 2.0323 -0.7104 1.2304 14 8 2.6530 -0.0979 2.0734 15 7 1.7919 -2.0264 1.3941 16 6 2.2807 -2.7171 2.5900 17 1 2.4419 -2.0435 3.4317 18 6 1.4684 -3.9718 2.9519 19 6 2.8079 -4.6430 3.2986 20 1 2.8699 -5.6838 2.9808 21 8 3.2090 -4.4527 4.6569 22 6 3.4653 -3.6589 2.3165 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.2204 0.3445 -2.2888 28 1 1.4119 1.4661 -4.4715 29 1 2.9919 3.2506 -5.6911 30 1 0.6133 4.7439 -4.9551 31 1 4.7320 5.2363 -4.2309 32 1 3.5133 6.1827 -6.1122 33 1 3.2162 4.8406 -2.5874 34 1 3.0266 3.7265 -0.4007 35 1 1.2958 -2.5163 0.7197 36 1 0.8133 -3.8347 3.8121 37 1 0.9598 -4.4234 2.1002 38 1 4.0510 -4.8722 4.8808 39 1 3.5037 -4.0257 1.2909 40 1 4.4222 -3.2691 2.6638 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_10157680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:18 Heat of formation + Delta-G solvation = -94.915149 kcal Electronic energy + Delta-G solvation = -23217.031607 eV Core-core repulsion = 19578.896581 eV Total energy + Delta-G solvation = -3638.135025 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88295 -41.02538 -39.89281 -38.93026 -37.15259 -36.32782 -34.43239 -32.82037 -32.04558 -31.34977 -26.84801 -26.77999 -26.18175 -24.77722 -23.93899 -22.44464 -21.58147 -20.86698 -19.52896 -18.74934 -18.36694 -18.06129 -17.34765 -16.89645 -16.74164 -16.45933 -16.23462 -15.86744 -15.65533 -15.46682 -15.31053 -14.75460 -14.56445 -14.33915 -14.27354 -13.76090 -13.59719 -13.50482 -13.41884 -13.36431 -13.16293 -12.89462 -12.33620 -12.27062 -12.12877 -12.02432 -11.70721 -11.47733 -11.04829 -10.75581 -10.41048 -10.18343 -10.05655 -9.24096 -4.99867 0.23348 0.30958 1.33074 1.34350 1.47845 1.63785 1.96314 2.47554 2.63972 3.09982 3.39149 3.45179 3.57107 3.63272 3.64682 3.72621 3.75284 3.83547 3.84964 3.91783 4.11108 4.25835 4.34152 4.48487 4.51393 4.56442 4.62313 4.65801 4.66484 4.79988 4.91287 4.97588 4.98015 5.03419 5.07944 5.17341 5.27513 5.41486 5.47133 5.66590 6.23685 6.42206 6.79440 6.82886 7.05834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.065 3.935 3 O -0.314 6.314 4 C 0.119 3.881 5 C -0.208 4.208 6 C -0.057 4.057 7 C -0.161 4.161 8 C -0.063 4.063 9 O -0.555 6.555 10 Si 0.765 3.235 11 C -0.075 4.075 12 C -0.161 4.161 13 C 0.514 3.486 14 O -0.573 6.573 15 N -0.696 5.696 16 C 0.118 3.882 17 H 0.081 0.919 18 C -0.130 4.130 19 C 0.080 3.920 20 H 0.101 0.899 21 O -0.577 6.577 22 C -0.179 4.179 23 H 0.110 0.890 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.395 0.605 31 H -0.290 1.290 32 H -0.299 1.299 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.422 0.578 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.399 0.601 39 H 0.114 0.886 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -5.456 -2.797 7.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 O -0.227 6.227 4 C 0.074 3.926 5 C -0.226 4.226 6 C -0.075 4.075 7 C -0.162 4.162 8 C -0.174 4.174 9 O -0.363 6.363 10 Si 0.673 3.327 11 C -0.092 4.092 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.452 6.452 15 N -0.350 5.350 16 C 0.013 3.987 17 H 0.099 0.901 18 C -0.168 4.168 19 C 0.021 3.979 20 H 0.119 0.881 21 O -0.386 6.386 22 C -0.218 4.218 23 H 0.129 0.871 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.173 0.827 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.245 0.755 31 H -0.217 1.217 32 H -0.227 1.227 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.260 0.740 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.250 0.750 39 H 0.132 0.868 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.826 -4.533 -2.665 5.970 hybrid contribution 0.628 -0.953 -0.214 1.161 sum -2.198 -5.485 -2.879 6.574 Atomic orbital electron populations 1.22365 0.90329 1.05795 1.04387 1.22422 0.97276 0.82159 0.97552 1.86193 1.81485 1.27016 1.28032 1.19283 0.95910 0.93194 0.84232 1.21528 1.06565 1.02638 0.91854 1.21006 0.95285 0.93726 0.97478 1.20347 1.03593 0.96818 0.95446 1.24993 0.91150 1.07848 0.93363 1.86460 1.26073 1.73060 1.50716 0.93814 0.79269 0.78865 0.80801 1.20968 0.97757 0.99577 0.90897 1.20599 1.03904 0.94134 0.99302 1.20671 0.78926 0.82954 0.87462 1.90751 1.41683 1.67177 1.45549 1.45732 1.57294 1.07936 1.24041 1.22497 0.96183 0.92314 0.87673 0.90084 1.23513 0.96286 0.93868 1.03125 1.22619 0.95448 0.98388 0.81493 0.88122 1.86439 1.44992 1.79885 1.27268 1.24181 0.98095 0.97561 1.01979 0.87121 0.92295 0.89376 0.85569 0.82747 0.84233 0.87465 0.75504 1.21709 1.22739 0.83289 0.84762 0.73957 0.90811 0.84905 0.75010 0.86790 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.95 9.12 71.98 0.66 1.60 16 2 C 0.07 -0.02 2.64 29.85 0.08 0.06 16 3 O -0.31 -2.33 9.34 -73.38 -0.69 -3.01 16 4 C 0.12 0.50 6.60 22.51 0.15 0.65 16 5 C -0.21 0.12 8.24 22.37 0.18 0.31 16 6 C -0.06 0.02 9.68 22.26 0.22 0.24 16 7 C -0.16 -0.02 5.35 -19.85 -0.11 -0.12 16 8 C -0.06 0.05 2.80 71.24 0.20 0.25 16 9 O -0.56 0.25 12.83 -148.98 -1.91 -1.67 16 10 Si 0.77 -1.13 29.80 68.60 2.04 0.92 16 11 C -0.07 -0.02 8.66 22.25 0.19 0.17 16 12 C -0.16 -0.61 9.99 22.36 0.22 -0.38 16 13 C 0.51 2.64 7.18 87.66 0.63 3.27 16 14 O -0.57 -9.87 16.11 15.95 0.26 -9.62 16 15 N -0.70 1.91 5.32 -440.03 -2.34 -0.43 16 16 C 0.12 0.05 4.18 45.52 0.19 0.24 16 17 H 0.08 0.73 7.46 -2.38 -0.02 0.71 16 18 C -0.13 0.63 7.66 31.12 0.24 0.87 16 19 C 0.08 -0.32 5.27 31.12 0.16 -0.16 16 20 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 21 O -0.58 -0.36 13.59 -148.98 -2.03 -2.39 16 22 C -0.18 0.48 7.71 31.12 0.24 0.72 16 23 H 0.11 -1.33 7.92 -2.39 -0.02 -1.35 16 24 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.09 -0.59 6.91 -2.39 -0.02 -0.61 16 26 H 0.13 -0.81 6.31 -2.39 -0.02 -0.83 16 27 H 0.16 -0.99 5.43 -2.91 -0.02 -1.00 16 28 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 29 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 30 H 0.40 -3.23 8.70 -74.06 -0.64 -3.87 16 31 H -0.29 -1.15 7.11 99.48 0.71 -0.44 16 32 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 33 H 0.15 -0.60 4.91 -2.91 -0.01 -0.62 16 34 H 0.13 0.46 8.06 -2.91 -0.02 0.43 16 35 H 0.42 -4.80 8.51 -92.70 -0.79 -5.59 16 36 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.13 -1.54 8.12 -2.39 -0.02 -1.56 16 38 H 0.40 -2.93 9.12 -74.06 -0.68 -3.61 16 39 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 Total: 0.00 -27.82 334.46 -2.38 -30.20 By element: Atomic # 1 Polarization: -20.73 SS G_CDS: -0.98 Total: -21.71 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 3.26 Total: 7.71 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -2.34 Total: -0.43 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -4.37 Total: -16.69 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 2.04 Total: 0.92 kcal Total: -27.82 -2.38 -30.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_10157680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.715 kcal (2) G-P(sol) polarization free energy of solvation -27.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds