Wall clock time and date at job start Sat Mar 6 2021 19:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47045 * 2 1 4 4 C 1.50704 * 109.47299 * 120.00249 * 2 1 3 5 5 C 1.38414 * 119.89034 * 245.01989 * 4 2 1 6 6 C 1.38242 * 120.33988 * 180.02562 * 5 4 2 7 7 C 1.38276 * 120.11917 * 359.95589 * 6 5 4 8 8 F 1.35103 * 120.11180 * 180.29641 * 7 6 5 9 9 C 1.39865 * 119.77662 * 0.02562 * 7 6 5 10 10 C 1.47691 * 120.16197 * 180.02562 * 9 7 6 11 11 O 1.21562 * 120.00491 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99657 * 180.02562 * 10 9 7 13 13 C 1.46499 * 120.00242 * 179.97438 * 12 10 9 14 14 H 1.09007 * 112.84706 * 25.33336 * 13 12 10 15 15 C 1.53780 * 113.61909 * 156.52466 * 13 12 10 16 16 C 1.53771 * 87.08189 * 139.98346 * 15 13 12 17 17 H 1.08997 * 113.61968 * 220.02217 * 16 15 13 18 18 O 1.42902 * 113.61649 * 89.20307 * 16 15 13 19 19 C 1.53774 * 113.61721 * 254.13887 * 13 12 10 20 20 C 1.37894 * 119.88857 * 64.99717 * 4 2 1 21 21 H 0.96694 * 114.00380 * 59.99411 * 1 2 3 22 22 H 1.08996 * 109.46867 * 239.99997 * 2 1 3 23 23 H 1.48494 * 110.00148 * 298.68149 * 3 2 1 24 24 H 1.48503 * 110.00248 * 60.00319 * 3 2 1 25 25 H 1.08010 * 119.82920 * 359.97438 * 5 4 2 26 26 H 1.08008 * 119.94119 * 179.97438 * 6 5 4 27 27 H 0.97004 * 120.00218 * 359.97438 * 12 10 9 28 28 H 1.08998 * 113.61397 * 254.53890 * 15 13 12 29 29 H 1.09004 * 113.60810 * 25.34811 * 15 13 12 30 30 H 0.96702 * 114.00456 * 180.02562 * 18 16 15 31 31 H 1.08998 * 113.61382 * 334.56349 * 19 13 12 32 32 H 1.09002 * 113.61827 * 105.46711 * 19 13 12 33 33 H 1.07994 * 120.06239 * 359.97438 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6391 -0.0092 2.1912 6 6 3.1047 -0.6517 3.3233 7 6 2.8648 -2.0016 3.5031 8 9 3.3147 -2.6281 4.6123 9 6 2.1498 -2.7149 2.5355 10 6 1.8882 -4.1568 2.7193 11 8 2.2950 -4.7267 3.7130 12 7 1.1994 -4.8411 1.7845 13 6 0.9403 -6.2715 1.9663 14 1 0.9412 -6.5720 3.0142 15 6 -0.2792 -6.7816 1.1804 16 6 0.5459 -8.0419 0.8714 17 1 0.4203 -8.4069 -0.1480 18 8 0.4053 -9.0727 1.8511 19 6 1.8018 -7.1729 1.0663 20 6 1.6840 -2.0570 1.3956 21 1 -0.3933 0.4417 -0.7649 22 1 1.7923 -0.5138 -0.8900 23 1 1.5879 2.4585 -1.2242 24 1 1.5615 2.4679 1.2085 25 1 2.8293 1.0453 2.0554 26 1 3.6566 -0.0983 4.0687 27 1 0.8751 -4.3866 0.9913 28 1 -1.1519 -6.9732 1.8047 29 1 -0.5120 -6.1835 0.2994 30 1 0.9222 -9.8679 1.6624 31 1 2.1398 -6.6830 0.1532 32 1 2.6065 -7.6802 1.5985 33 1 1.1309 -2.6015 0.6447 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_12335834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:34 Heat of formation + Delta-G solvation = -100.791562 kcal Electronic energy + Delta-G solvation = -20196.012399 eV Core-core repulsion = 16717.926008 eV Total energy + Delta-G solvation = -3478.086391 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04133 -41.57519 -40.42701 -39.44842 -37.60220 -36.34598 -34.28836 -32.59380 -32.21917 -26.81237 -26.63156 -26.35037 -24.72216 -22.86366 -21.70272 -20.88915 -19.20700 -18.64067 -18.44447 -18.28039 -17.70680 -17.00642 -16.92150 -16.52127 -16.20459 -15.91987 -15.64362 -15.62770 -14.97813 -14.50616 -14.40311 -14.07470 -13.82907 -13.71759 -13.52990 -13.34492 -13.20049 -12.77398 -12.43163 -12.31307 -11.81789 -11.49762 -11.24575 -10.79552 -10.51183 -10.43392 -10.12107 -9.83643 -4.88736 -0.52953 -0.04848 1.30245 1.55135 1.63704 1.93329 1.99550 2.42079 3.02445 3.09389 3.26272 3.36230 3.42278 3.56955 3.65631 3.73102 3.77556 4.00894 4.09256 4.11947 4.33971 4.48108 4.57569 4.64537 4.75049 4.78599 4.81191 4.91062 4.91392 4.96603 5.03970 5.14508 5.40338 5.56861 6.33034 6.61469 6.83870 7.01475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.078 4.078 3 Si 0.756 3.244 4 C -0.095 4.095 5 C -0.054 4.054 6 C -0.152 4.152 7 C 0.132 3.868 8 F -0.137 7.137 9 C -0.190 4.190 10 C 0.553 3.447 11 O -0.575 6.575 12 N -0.697 5.697 13 C 0.116 3.884 14 H 0.081 0.919 15 C -0.132 4.132 16 C 0.084 3.916 17 H 0.103 0.897 18 O -0.577 6.577 19 C -0.177 4.177 20 C -0.023 4.023 21 H 0.399 0.601 22 H 0.111 0.889 23 H -0.287 1.287 24 H -0.296 1.296 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.417 0.583 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.400 0.600 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.677 3.029 -10.089 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.187 4.187 3 Si 0.662 3.338 4 C -0.095 4.095 5 C -0.072 4.072 6 C -0.170 4.170 7 C 0.111 3.889 8 F -0.115 7.115 9 C -0.194 4.194 10 C 0.341 3.659 11 O -0.455 6.455 12 N -0.350 5.350 13 C 0.011 3.989 14 H 0.100 0.900 15 C -0.170 4.170 16 C 0.024 3.976 17 H 0.121 0.879 18 O -0.386 6.386 19 C -0.216 4.216 20 C -0.042 4.042 21 H 0.250 0.750 22 H 0.129 0.871 23 H -0.214 1.214 24 H -0.223 1.223 25 H 0.181 0.819 26 H 0.186 0.814 27 H 0.256 0.744 28 H 0.091 0.909 29 H 0.149 0.851 30 H 0.251 0.749 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.454 3.527 -8.544 9.254 hybrid contribution -0.748 -0.557 -0.286 0.976 sum -0.295 2.969 -8.830 9.321 Atomic orbital electron populations 1.86539 1.18043 1.80672 1.51413 1.24888 0.84413 1.11430 0.97976 0.94216 0.90322 0.72500 0.76776 1.19499 0.99579 0.93597 0.96844 1.21378 0.93859 1.00871 0.91096 1.21356 1.03421 0.91398 1.00851 1.18214 0.95763 0.91760 0.83150 1.91557 1.86551 1.83013 1.50396 1.20063 1.06912 0.93771 0.98609 1.18410 0.77998 0.86692 0.82798 1.90834 1.52742 1.71126 1.30835 1.45767 1.55549 1.10128 1.23506 1.22547 0.97736 0.78761 0.99877 0.90046 1.23512 0.96522 0.95423 1.01527 1.22626 0.94883 0.87486 0.92611 0.87883 1.86440 1.72483 1.29168 1.50463 1.24195 0.98123 0.98320 1.00942 1.21216 0.94348 0.94218 0.94406 0.75031 0.87117 1.21385 1.22313 0.81901 0.81434 0.74419 0.90861 0.85107 0.74946 0.86816 0.91831 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.47 12.81 -148.98 -1.91 0.56 16 2 C -0.08 0.57 2.79 71.24 0.20 0.77 16 3 Si 0.76 -5.44 29.84 68.60 2.05 -3.39 16 4 C -0.09 0.31 5.38 -19.90 -0.11 0.20 16 5 C -0.05 0.18 8.66 22.31 0.19 0.38 16 6 C -0.15 -0.04 10.01 22.28 0.22 0.19 16 7 C 0.13 0.99 7.29 22.67 0.17 1.15 16 8 F -0.14 -1.98 15.55 44.97 0.70 -1.28 16 9 C -0.19 -1.04 5.88 -20.05 -0.12 -1.15 16 10 C 0.55 5.44 7.77 86.74 0.67 6.11 16 11 O -0.58 -11.53 14.96 -3.91 -0.06 -11.59 16 12 N -0.70 -1.17 5.31 -443.06 -2.35 -3.53 16 13 C 0.12 0.37 4.15 45.52 0.19 0.56 16 14 H 0.08 0.93 7.50 -2.38 -0.02 0.91 16 15 C -0.13 0.33 7.66 31.12 0.24 0.57 16 16 C 0.08 -0.22 5.28 31.18 0.16 -0.06 16 17 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 18 O -0.58 -0.97 13.59 -148.98 -2.02 -2.99 16 19 C -0.18 0.17 7.72 31.18 0.24 0.41 16 20 C -0.02 0.04 9.17 22.52 0.21 0.25 16 21 H 0.40 -4.76 8.74 -74.06 -0.65 -5.41 16 22 H 0.11 -1.40 7.96 -2.39 -0.02 -1.42 16 23 H -0.29 0.65 7.11 99.48 0.71 1.35 16 24 H -0.30 -0.04 7.04 99.48 0.70 0.66 16 25 H 0.16 -1.34 4.84 -2.91 -0.01 -1.35 16 26 H 0.17 -0.70 8.06 -2.91 -0.02 -0.72 16 27 H 0.42 -2.53 6.74 -92.71 -0.63 -3.15 16 28 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.13 -1.18 8.11 -2.38 -0.02 -1.20 16 30 H 0.40 -2.64 9.12 -74.06 -0.68 -3.31 16 31 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.16 -1.28 6.40 -2.91 -0.02 -1.30 16 Total: 0.00 -26.97 288.01 -2.06 -29.04 By element: Atomic # 1 Polarization: -15.46 SS G_CDS: -0.73 Total: -16.19 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 2.27 Total: 9.38 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -2.35 Total: -3.53 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -3.99 Total: -14.02 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.70 Total: -1.28 kcal Atomic # 14 Polarization: -5.44 SS G_CDS: 2.05 Total: -3.39 kcal Total: -26.97 -2.06 -29.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.756 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds