Wall clock time and date at job start Sat Mar 6 2021 19:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38236 * 119.99632 * 244.72513 * 4 2 1 6 6 C 1.38238 * 119.99657 * 179.79236 * 5 4 2 7 7 C 1.38229 * 119.99820 * 0.43889 * 6 5 4 8 8 C 1.50700 * 119.99999 * 179.83616 * 7 6 5 9 9 C 1.50702 * 109.46929 * 269.98026 * 8 7 6 10 10 O 1.21282 * 120.00362 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99708 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99789 * 180.02562 * 11 9 8 13 13 H 1.09005 * 112.85118 * 23.80220 * 12 11 9 14 14 C 1.53780 * 113.61696 * 154.99945 * 12 11 9 15 15 C 1.53773 * 87.08249 * 139.97820 * 14 12 11 16 16 H 1.08999 * 113.61498 * 220.01961 * 15 14 12 17 17 O 1.42900 * 113.61471 * 89.20138 * 15 14 12 18 18 C 1.53777 * 87.08257 * 334.56990 * 15 14 12 19 19 C 1.38233 * 120.00244 * 359.81636 * 7 6 5 20 20 C 1.38234 * 120.00312 * 359.97345 * 19 7 6 21 21 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 22 22 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 23 23 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 24 24 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 25 25 H 1.08000 * 120.00191 * 0.02562 * 5 4 2 26 26 H 1.08000 * 119.99923 * 180.27468 * 6 5 4 27 27 H 1.09000 * 109.47134 * 29.97864 * 8 7 6 28 28 H 1.08996 * 109.47513 * 149.98399 * 8 7 6 29 29 H 0.96998 * 120.00114 * 359.97438 * 11 9 8 30 30 H 1.08998 * 113.61386 * 254.53280 * 14 12 11 31 31 H 1.09006 * 113.61107 * 25.34420 * 14 12 11 32 32 H 0.96696 * 114.00419 * 179.97438 * 17 15 14 33 33 H 1.09003 * 113.61024 * 270.88082 * 18 15 14 34 34 H 1.09005 * 113.61484 * 139.98357 * 18 15 14 35 35 H 1.08010 * 120.00188 * 179.97438 * 19 7 6 36 36 H 1.07999 * 120.00412 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6435 -0.0134 2.1887 6 6 3.1004 -0.6641 3.3195 7 6 2.8529 -2.0136 3.4879 8 6 3.3542 -2.7238 4.7189 9 6 4.7354 -3.2673 4.4578 10 8 5.2607 -3.0954 3.3782 11 7 5.3868 -3.9445 5.4240 12 6 6.7297 -4.4724 5.1704 13 1 7.2527 -3.9362 4.3785 14 6 7.5687 -4.6603 6.4454 15 6 8.0772 -5.9714 5.8232 16 1 8.1659 -6.7887 6.5389 17 8 9.2476 -5.8076 5.0199 18 6 6.7707 -6.0015 5.0126 19 6 2.1452 -2.7117 2.5273 20 6 1.6845 -2.0602 1.3985 21 1 -0.3934 0.4418 0.7650 22 1 1.7924 -0.5139 -0.8899 23 1 1.5616 2.4678 -1.2086 24 1 1.5878 2.4586 1.2241 25 1 2.8397 1.0402 2.0555 26 1 3.6530 -0.1186 4.0702 27 1 3.3913 -2.0229 5.5529 28 1 2.6810 -3.5451 4.9641 29 1 4.9668 -4.0817 6.2876 30 1 8.3459 -3.9065 6.5716 31 1 6.9700 -4.8055 7.3446 32 1 9.5725 -6.6289 4.6261 33 1 5.9539 -6.5150 5.5199 34 1 6.9038 -6.3308 3.9820 35 1 1.9522 -3.7662 2.6587 36 1 1.1313 -2.6054 0.6482 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_12335836.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:36 Heat of formation + Delta-G solvation = -65.843918 kcal Electronic energy + Delta-G solvation = -19303.381048 eV Core-core repulsion = 16140.726457 eV Total energy + Delta-G solvation = -3162.654591 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37562 -40.55235 -39.51997 -37.77793 -36.23972 -34.24569 -33.59618 -31.94691 -29.78297 -26.76013 -26.26368 -24.79892 -23.83324 -22.24417 -21.43358 -20.78593 -18.62900 -18.45392 -18.05291 -17.34852 -16.93879 -16.63411 -16.29032 -16.20553 -15.99901 -15.49168 -15.20331 -14.81242 -14.49822 -14.41430 -14.02634 -13.67927 -13.52772 -13.27400 -13.23345 -12.95789 -12.84387 -12.29532 -12.26051 -12.01343 -11.61354 -11.43376 -11.04336 -10.73462 -10.61586 -10.02600 -9.88403 -9.63760 -4.93738 0.22822 0.44499 1.28398 1.55659 1.62733 1.90217 2.19862 2.78148 3.12824 3.39935 3.47655 3.60427 3.70304 3.78039 3.81672 3.89736 4.03474 4.04511 4.15869 4.34832 4.45915 4.53741 4.56912 4.60782 4.68760 4.71269 4.82404 4.97427 5.00457 5.00902 5.07750 5.14865 5.36938 5.52259 5.55339 5.58238 6.00927 6.46233 6.58006 6.84418 7.29173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.084 4.084 3 Si 0.763 3.237 4 C -0.125 4.125 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.072 4.072 8 C -0.097 4.097 9 C 0.511 3.489 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.120 3.880 13 H 0.080 0.920 14 C -0.133 4.133 15 C 0.079 3.921 16 H 0.098 0.902 17 O -0.577 6.577 18 C -0.178 4.178 19 C -0.116 4.116 20 C -0.107 4.107 21 H 0.386 0.614 22 H 0.118 0.882 23 H -0.301 1.301 24 H -0.277 1.277 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.419 0.581 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.399 0.601 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.132 0.868 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -3.170 7.564 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.193 4.193 3 Si 0.668 3.332 4 C -0.125 4.125 5 C -0.142 4.142 6 C -0.130 4.130 7 C -0.072 4.072 8 C -0.136 4.136 9 C 0.299 3.701 10 O -0.461 6.461 11 N -0.361 5.361 12 C 0.015 3.985 13 H 0.098 0.902 14 C -0.171 4.171 15 C 0.019 3.981 16 H 0.116 0.884 17 O -0.386 6.386 18 C -0.217 4.217 19 C -0.134 4.134 20 C -0.125 4.125 21 H 0.235 0.765 22 H 0.136 0.864 23 H -0.229 1.229 24 H -0.203 1.203 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.257 0.743 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.249 0.751 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.683 -1.917 6.440 6.754 hybrid contribution -1.134 -0.830 0.251 1.428 sum -0.451 -2.747 6.692 7.248 Atomic orbital electron populations 1.86563 1.18442 1.80454 1.50142 1.25222 0.83489 1.12017 0.98561 0.93907 0.90651 0.72054 0.76591 1.20327 1.00191 0.95034 0.96986 1.21195 0.98501 1.00298 0.94231 1.21230 0.99178 0.94383 0.98166 1.19601 0.97409 0.93995 0.96223 1.20766 0.92630 1.02796 0.97455 1.21114 0.88188 0.77100 0.83730 1.90744 1.69630 1.59318 1.26388 1.45915 1.17171 1.55997 1.17035 1.22370 0.83119 0.94163 0.98878 0.90195 1.23500 0.98898 0.97131 0.97526 1.22628 0.83927 0.98709 0.92829 0.88447 1.86436 1.44227 1.39139 1.68753 1.24150 0.99730 0.96310 1.01544 1.21245 0.98077 1.00259 0.93847 1.21107 0.99337 0.94180 0.97903 0.76503 0.86399 1.22904 1.20321 0.84316 0.84185 0.84925 0.85192 0.74270 0.91056 0.85281 0.75059 0.87051 0.92137 0.85005 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.85 12.83 -148.98 -1.91 -4.76 16 2 C -0.08 -0.25 2.80 71.24 0.20 -0.05 16 3 Si 0.76 0.67 29.88 68.60 2.05 2.72 16 4 C -0.13 -0.51 5.35 -19.86 -0.11 -0.62 16 5 C -0.12 -0.33 8.67 22.27 0.19 -0.14 16 6 C -0.11 -0.25 9.70 22.27 0.22 -0.03 16 7 C -0.07 -0.15 4.37 -19.87 -0.09 -0.23 16 8 C -0.10 0.44 5.83 29.10 0.17 0.61 16 9 C 0.51 1.13 7.82 87.66 0.69 1.82 16 10 O -0.58 -7.76 15.63 -3.04 -0.05 -7.81 16 11 N -0.71 2.41 5.36 -440.02 -2.36 0.06 16 12 C 0.12 0.05 4.18 45.52 0.19 0.24 16 13 H 0.08 0.70 7.46 -2.38 -0.02 0.68 16 14 C -0.13 0.55 7.66 31.12 0.24 0.79 16 15 C 0.08 -0.27 5.27 31.12 0.16 -0.10 16 16 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 17 O -0.58 -0.56 13.59 -148.98 -2.03 -2.58 16 18 C -0.18 0.44 7.71 31.12 0.24 0.68 16 19 C -0.12 -0.42 9.70 22.27 0.22 -0.21 16 20 C -0.11 -0.55 9.69 22.27 0.22 -0.33 16 21 H 0.39 -0.30 8.70 -74.06 -0.64 -0.95 16 22 H 0.12 0.27 7.96 -2.39 -0.02 0.25 16 23 H -0.30 -2.43 7.11 99.48 0.71 -1.73 16 24 H -0.28 -0.97 7.01 99.48 0.70 -0.28 16 25 H 0.14 -0.13 4.85 -2.91 -0.01 -0.15 16 26 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 27 H 0.13 -1.33 8.09 -2.39 -0.02 -1.35 16 28 H 0.13 -1.25 8.09 -2.39 -0.02 -1.27 16 29 H 0.42 -4.68 8.73 -92.71 -0.81 -5.48 16 30 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.13 -1.34 8.12 -2.38 -0.02 -1.36 16 32 H 0.40 -2.83 9.12 -74.06 -0.68 -3.50 16 33 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 35 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.12 0.53 8.06 -2.91 -0.02 0.51 16 Total: 0.00 -23.65 308.02 -2.74 -26.39 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: -0.98 Total: -16.42 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 2.54 Total: 2.41 kcal Atomic # 7 Polarization: 2.41 SS G_CDS: -2.36 Total: 0.06 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -3.98 Total: -15.15 kcal Atomic # 14 Polarization: 0.67 SS G_CDS: 2.05 Total: 2.72 kcal Total: -23.65 -2.74 -26.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335836.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.458 kcal (2) G-P(sol) polarization free energy of solvation -23.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds