Wall clock time and date at job start Sat Mar 6 2021 19:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.34459 * 126.48165 * 104.68373 * 4 2 1 6 6 N 1.36566 * 109.98423 * 179.86572 * 5 4 2 7 7 C 1.37828 * 109.86200 * 0.41681 * 6 5 4 8 8 C 1.38647 * 133.38393 * 179.73357 * 7 6 5 9 9 C 1.39321 * 119.66568 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.82915 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00306 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99700 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99894 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.84571 * 25.33488 * 13 12 10 15 15 C 1.53775 * 113.61564 * 156.52758 * 13 12 10 16 16 C 1.53776 * 87.08105 * 139.98271 * 15 13 12 17 17 H 1.09003 * 113.61512 * 219.93430 * 16 15 13 18 18 O 1.42900 * 113.61265 * 89.11910 * 16 15 13 19 19 C 1.53774 * 113.61426 * 254.13882 * 13 12 10 20 20 C 1.40202 * 120.33836 * 359.97438 * 9 8 7 21 21 C 1.36235 * 120.37661 * 0.02562 * 20 9 8 22 22 C 1.39869 * 119.95898 * 359.97438 * 21 20 9 23 23 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 24 24 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 25 25 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 26 26 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 27 27 H 1.07996 * 125.00632 * 0.02562 * 5 4 2 28 28 H 0.97003 * 125.07209 * 180.14600 * 6 5 4 29 29 H 1.07993 * 120.16448 * 0.04629 * 8 7 6 30 30 H 0.96995 * 120.00478 * 359.97438 * 12 10 9 31 31 H 1.09006 * 113.62000 * 254.53666 * 15 13 12 32 32 H 1.09009 * 113.61208 * 25.35057 * 15 13 12 33 33 H 0.96698 * 113.99915 * 179.97438 * 18 16 15 34 34 H 1.08995 * 113.61666 * 334.56567 * 19 13 12 35 35 H 1.08998 * 113.61729 * 105.47256 * 19 13 12 36 36 H 1.07995 * 119.81311 * 180.02562 * 20 9 8 37 37 H 1.08004 * 120.01982 * 179.97438 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4561 -0.1357 -2.3270 6 7 2.8026 -1.0944 -3.2359 7 6 2.4940 -2.3429 -2.7402 8 6 2.6298 -3.6276 -3.2435 9 6 2.2119 -4.7152 -2.4797 10 6 2.3553 -6.0843 -3.0117 11 8 2.8367 -6.2609 -4.1141 12 7 1.9526 -7.1389 -2.2754 13 6 2.0944 -8.4980 -2.8037 14 1 2.8909 -8.5838 -3.5429 15 6 2.1471 -9.5806 -1.7129 16 6 1.2682 -10.4416 -2.6353 17 1 0.4966 -11.0008 -2.1061 18 8 2.0152 -11.2519 -3.5450 19 6 0.7650 -9.1253 -3.2552 20 6 1.6567 -4.5158 -1.2078 21 6 1.5196 -3.2568 -0.7057 22 6 1.9345 -2.1548 -1.4605 23 1 -0.3934 0.4418 -0.7650 24 1 1.7923 -0.5138 0.8899 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7703 -0.0322 27 1 2.5869 0.9271 -2.4672 28 1 3.2023 -0.9221 -4.1028 29 1 3.0578 -3.7844 -4.2226 30 1 1.5688 -6.9982 -1.3958 31 1 3.1443 -9.9906 -1.5523 32 1 1.6546 -9.2897 -0.7849 33 1 1.4679 -11.7961 -4.1275 34 1 -0.1073 -8.7104 -2.7502 35 1 0.6478 -9.1683 -4.3380 36 1 1.3360 -5.3650 -0.6228 37 1 1.0908 -3.1098 0.2746 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_12335838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:39 Heat of formation + Delta-G solvation = -22.816356 kcal Electronic energy + Delta-G solvation = -22055.363731 eV Core-core repulsion = 18572.696763 eV Total energy + Delta-G solvation = -3482.666968 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.47537 -41.17585 -39.72495 -37.86518 -37.43542 -36.23226 -33.85453 -33.24067 -30.71182 -30.52987 -26.83069 -26.59590 -25.93130 -23.93936 -23.60893 -21.43380 -20.98566 -20.74105 -19.37239 -18.63077 -18.22332 -17.57256 -17.11740 -16.93098 -16.35543 -16.12908 -15.99114 -15.59285 -15.48548 -15.11633 -14.91415 -14.73026 -14.52591 -14.31842 -14.01421 -13.63381 -13.50598 -13.22582 -13.08258 -12.61137 -12.31185 -12.26013 -12.20765 -11.91667 -11.49480 -10.97953 -10.74859 -10.73742 -10.35703 -10.00407 -9.34522 -8.80685 -5.10558 -0.24787 0.40451 1.28413 1.37508 1.61954 1.89860 1.96856 2.03398 2.28379 2.94016 2.99122 3.40726 3.54584 3.59133 3.65433 3.73902 3.76627 3.80911 3.87094 4.05884 4.12670 4.32170 4.42754 4.45817 4.53831 4.55569 4.57748 4.74074 4.75932 4.91609 4.97042 4.99030 5.11271 5.25786 5.44367 5.45567 5.57518 5.61505 5.99403 6.36624 6.53866 6.62379 6.64598 7.28118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.030 4.030 3 Si 0.685 3.315 4 C -0.211 4.211 5 C 0.077 3.923 6 N -0.584 5.584 7 C 0.082 3.918 8 C -0.056 4.056 9 C -0.122 4.122 10 C 0.564 3.436 11 O -0.537 6.537 12 N -0.718 5.718 13 C 0.130 3.870 14 H 0.120 0.880 15 C -0.141 4.141 16 C 0.082 3.918 17 H 0.076 0.924 18 O -0.551 6.551 19 C -0.185 4.185 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.064 4.064 23 H 0.377 0.623 24 H 0.111 0.889 25 H -0.255 1.255 26 H -0.256 1.256 27 H 0.179 0.821 28 H 0.422 0.578 29 H 0.136 0.864 30 H 0.401 0.599 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.385 0.615 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 2.324 0.262 3.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.586 3.414 4 C -0.219 4.219 5 C -0.052 4.052 6 N -0.186 5.186 7 C -0.025 4.025 8 C -0.078 4.078 9 C -0.126 4.126 10 C 0.352 3.648 11 O -0.415 6.415 12 N -0.369 5.369 13 C 0.025 3.975 14 H 0.138 0.862 15 C -0.179 4.179 16 C 0.022 3.978 17 H 0.094 0.906 18 O -0.357 6.357 19 C -0.224 4.224 20 C -0.133 4.133 21 C -0.091 4.091 22 C -0.069 4.069 23 H 0.224 0.776 24 H 0.129 0.871 25 H -0.179 1.179 26 H -0.181 1.181 27 H 0.196 0.804 28 H 0.260 0.740 29 H 0.154 0.846 30 H 0.237 0.763 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.233 0.767 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.143 0.857 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.218 2.806 0.636 3.125 hybrid contribution -0.405 -0.682 -0.098 0.799 sum -1.624 2.124 0.538 2.727 Atomic orbital electron populations 1.86506 1.17433 1.81752 1.49021 1.24334 0.84746 1.08878 0.96169 0.95271 0.80755 0.77343 0.87982 1.20733 1.10925 0.92118 0.98119 1.21749 0.99759 0.94331 0.89327 1.41723 1.54603 1.04003 1.18294 1.18077 1.03207 0.86307 0.94886 1.20083 0.99433 0.88084 1.00161 1.19447 1.04981 0.92374 0.95813 1.18201 0.77277 0.84636 0.84699 1.90793 1.44390 1.86190 1.20122 1.45915 1.64166 1.05915 1.20909 1.22516 0.98723 0.79120 0.97097 0.86229 1.23457 1.02091 0.95090 0.97276 1.22517 0.93873 0.90152 0.91289 0.90624 1.86472 1.36946 1.59740 1.52494 1.24202 0.98344 0.97174 1.02644 1.20679 1.00638 0.97319 0.94695 1.20200 0.98773 0.90497 0.99675 1.19177 1.01027 0.93085 0.93600 0.77581 0.87146 1.17904 1.18090 0.80429 0.73994 0.84607 0.76316 0.89565 0.88227 0.76711 0.88921 0.90238 0.85677 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.04 12.88 -35.23 -0.45 -0.49 16 2 C -0.03 0.02 3.06 36.01 0.11 0.13 16 3 Si 0.69 -1.37 30.76 -169.99 -5.23 -6.60 16 4 C -0.21 -0.01 5.57 -102.74 -0.57 -0.58 16 5 C 0.08 -0.16 10.43 -16.78 -0.17 -0.33 16 6 N -0.58 0.75 6.07 -10.68 -0.06 0.69 16 7 C 0.08 0.13 7.26 -84.00 -0.61 -0.48 16 8 C -0.06 -0.14 9.61 -39.03 -0.37 -0.51 16 9 C -0.12 -0.29 5.87 -104.95 -0.62 -0.91 16 10 C 0.56 2.05 7.76 -12.45 -0.10 1.95 16 11 O -0.54 -3.94 15.93 5.29 0.08 -3.85 16 12 N -0.72 -0.48 5.31 -54.05 -0.29 -0.77 16 13 C 0.13 0.14 4.15 -67.12 -0.28 -0.14 16 14 H 0.12 0.45 7.50 -51.93 -0.39 0.06 16 15 C -0.14 0.12 7.66 -25.92 -0.20 -0.08 16 16 C 0.08 -0.07 5.28 -25.83 -0.14 -0.20 16 17 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 18 O -0.55 -0.33 13.59 -35.23 -0.48 -0.81 16 19 C -0.18 0.06 7.72 -25.83 -0.20 -0.14 16 20 C -0.11 -0.06 9.46 -39.57 -0.37 -0.44 16 21 C -0.07 -0.09 10.03 -39.69 -0.40 -0.49 16 22 C -0.06 -0.12 6.35 -105.04 -0.67 -0.79 16 23 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 24 H 0.11 0.03 7.96 -51.93 -0.41 -0.39 16 25 H -0.25 -0.41 7.11 56.52 0.40 0.00 16 26 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 27 H 0.18 -1.03 6.35 -52.49 -0.33 -1.36 16 28 H 0.42 -1.69 8.96 -40.82 -0.37 -2.06 16 29 H 0.14 0.31 7.62 -52.49 -0.40 -0.09 16 30 H 0.40 -0.85 6.70 -40.82 -0.27 -1.12 16 31 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.10 -0.30 8.11 -51.92 -0.42 -0.72 16 33 H 0.38 -1.33 9.12 45.56 0.42 -0.91 16 34 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 36 H 0.13 -0.29 6.36 -52.49 -0.33 -0.62 16 37 H 0.13 0.01 8.06 -52.48 -0.42 -0.41 16 LS Contribution 316.97 15.07 4.78 4.78 Total: 0.00 -10.76 316.97 -9.67 -20.43 By element: Atomic # 1 Polarization: -6.93 SS G_CDS: -3.43 Total: -10.36 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.59 Total: -3.02 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -0.35 Total: -0.08 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.85 Total: -5.16 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -5.23 Total: -6.60 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -10.76 -9.67 -20.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.383 kcal (2) G-P(sol) polarization free energy of solvation -10.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds