Wall clock time and date at job start Sat Mar 6 2021 19:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46997 * 2 1 4 4 C 1.50699 * 109.46830 * 240.00466 * 2 1 3 5 5 C 1.34459 * 126.48165 * 104.68373 * 4 2 1 6 6 N 1.36566 * 109.98423 * 179.86572 * 5 4 2 7 7 C 1.37828 * 109.86200 * 0.41681 * 6 5 4 8 8 C 1.38647 * 133.38393 * 179.73357 * 7 6 5 9 9 C 1.39321 * 119.66568 * 180.02562 * 8 7 6 10 10 C 1.47577 * 119.82915 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00306 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99700 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99894 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.84571 * 25.33488 * 13 12 10 15 15 C 1.53775 * 113.61564 * 156.52758 * 13 12 10 16 16 C 1.53776 * 87.08105 * 139.98271 * 15 13 12 17 17 H 1.09003 * 113.61512 * 219.93430 * 16 15 13 18 18 O 1.42900 * 113.61265 * 89.11910 * 16 15 13 19 19 C 1.53774 * 113.61426 * 254.13882 * 13 12 10 20 20 C 1.40202 * 120.33836 * 359.97438 * 9 8 7 21 21 C 1.36235 * 120.37661 * 0.02562 * 20 9 8 22 22 C 1.39869 * 119.95898 * 359.97438 * 21 20 9 23 23 H 0.96708 * 114.00246 * 59.99398 * 1 2 3 24 24 H 1.08991 * 109.47274 * 120.00272 * 2 1 3 25 25 H 1.48506 * 109.99834 * 60.00805 * 3 2 1 26 26 H 1.48502 * 110.00011 * 181.32069 * 3 2 1 27 27 H 1.07996 * 125.00632 * 0.02562 * 5 4 2 28 28 H 0.97003 * 125.07209 * 180.14600 * 6 5 4 29 29 H 1.07993 * 120.16448 * 0.04629 * 8 7 6 30 30 H 0.96995 * 120.00478 * 359.97438 * 12 10 9 31 31 H 1.09006 * 113.62000 * 254.53666 * 15 13 12 32 32 H 1.09009 * 113.61208 * 25.35057 * 15 13 12 33 33 H 0.96698 * 113.99915 * 179.97438 * 18 16 15 34 34 H 1.08995 * 113.61666 * 334.56567 * 19 13 12 35 35 H 1.08998 * 113.61729 * 105.47256 * 19 13 12 36 36 H 1.07995 * 119.81311 * 180.02562 * 20 9 8 37 37 H 1.08004 * 120.01982 * 179.97438 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4561 -0.1357 -2.3270 6 7 2.8026 -1.0944 -3.2359 7 6 2.4940 -2.3429 -2.7402 8 6 2.6298 -3.6276 -3.2435 9 6 2.2119 -4.7152 -2.4797 10 6 2.3553 -6.0843 -3.0117 11 8 2.8367 -6.2609 -4.1141 12 7 1.9526 -7.1389 -2.2754 13 6 2.0944 -8.4980 -2.8037 14 1 2.8909 -8.5838 -3.5429 15 6 2.1471 -9.5806 -1.7129 16 6 1.2682 -10.4416 -2.6353 17 1 0.4966 -11.0008 -2.1061 18 8 2.0152 -11.2519 -3.5450 19 6 0.7650 -9.1253 -3.2552 20 6 1.6567 -4.5158 -1.2078 21 6 1.5196 -3.2568 -0.7057 22 6 1.9345 -2.1548 -1.4605 23 1 -0.3934 0.4418 -0.7650 24 1 1.7923 -0.5138 0.8899 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7703 -0.0322 27 1 2.5869 0.9271 -2.4672 28 1 3.2023 -0.9221 -4.1028 29 1 3.0578 -3.7844 -4.2226 30 1 1.5688 -6.9982 -1.3958 31 1 3.1443 -9.9906 -1.5523 32 1 1.6546 -9.2897 -0.7849 33 1 1.4679 -11.7961 -4.1275 34 1 -0.1073 -8.7104 -2.7502 35 1 0.6478 -9.1683 -4.3380 36 1 1.3360 -5.3650 -0.6228 37 1 1.0908 -3.1098 0.2746 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_12335838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:38 Heat of formation + Delta-G solvation = -28.669821 kcal Electronic energy + Delta-G solvation = -22055.617556 eV Core-core repulsion = 18572.696763 eV Total energy + Delta-G solvation = -3482.920793 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46757 -41.29284 -39.81279 -37.87946 -37.44251 -36.31757 -33.98137 -33.24238 -30.73369 -30.56312 -26.79538 -26.57628 -25.94811 -23.97618 -23.65969 -21.59490 -20.99109 -20.69858 -19.38693 -18.63417 -18.24548 -17.54789 -17.19483 -16.96631 -16.40665 -16.13767 -16.07666 -15.63745 -15.52738 -15.12754 -14.98566 -14.76585 -14.50882 -14.37719 -14.01260 -13.66807 -13.49431 -13.22359 -13.05008 -12.66785 -12.31484 -12.28843 -12.25980 -11.92989 -11.47548 -11.20285 -10.79676 -10.77648 -10.29027 -10.15310 -9.37746 -8.79636 -4.96600 -0.34550 0.35411 1.38627 1.41738 1.72022 1.87259 1.91505 2.06281 2.26227 2.84008 3.10615 3.42437 3.59409 3.62713 3.67761 3.73613 3.79723 3.88882 3.92202 4.08292 4.13833 4.28939 4.46446 4.49112 4.57367 4.57951 4.66310 4.76920 4.80546 4.93434 4.94901 4.97765 5.07064 5.20128 5.39359 5.43082 5.52152 5.60900 5.96941 6.44045 6.53913 6.84316 6.91194 7.10547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.039 4.039 3 Si 0.795 3.205 4 C -0.235 4.235 5 C 0.097 3.903 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.068 4.068 9 C -0.138 4.138 10 C 0.560 3.440 11 O -0.586 6.586 12 N -0.701 5.701 13 C 0.117 3.883 14 H 0.084 0.916 15 C -0.133 4.133 16 C 0.083 3.917 17 H 0.101 0.899 18 O -0.576 6.576 19 C -0.178 4.178 20 C -0.107 4.107 21 C -0.086 4.086 22 C -0.082 4.082 23 H 0.393 0.607 24 H 0.097 0.903 25 H -0.306 1.306 26 H -0.286 1.286 27 H 0.220 0.780 28 H 0.435 0.565 29 H 0.127 0.873 30 H 0.416 0.584 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.400 0.600 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.153 0.847 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 3.096 1.042 4.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.148 4.148 3 Si 0.700 3.300 4 C -0.242 4.242 5 C -0.032 4.032 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.089 4.089 9 C -0.143 4.143 10 C 0.349 3.651 11 O -0.468 6.468 12 N -0.353 5.353 13 C 0.012 3.988 14 H 0.102 0.898 15 C -0.171 4.171 16 C 0.024 3.976 17 H 0.119 0.881 18 O -0.385 6.385 19 C -0.217 4.217 20 C -0.126 4.126 21 C -0.104 4.104 22 C -0.087 4.087 23 H 0.243 0.757 24 H 0.114 0.886 25 H -0.234 1.234 26 H -0.213 1.213 27 H 0.236 0.764 28 H 0.275 0.725 29 H 0.145 0.855 30 H 0.255 0.745 31 H 0.093 0.907 32 H 0.147 0.853 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.171 0.829 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.126 3.538 1.403 4.360 hybrid contribution -0.137 -0.891 -0.310 0.954 sum -2.263 2.647 1.093 3.650 Atomic orbital electron populations 1.86462 1.17853 1.82301 1.50274 1.24540 0.84630 1.10182 0.95496 0.94053 0.77069 0.73586 0.85247 1.20863 1.12651 0.91431 0.99262 1.22380 0.97081 0.95795 0.87990 1.41829 1.54034 1.03223 1.18991 1.18105 1.03885 0.86851 0.95235 1.20137 0.99808 0.88937 1.00025 1.19461 1.06383 0.91613 0.96817 1.18491 0.76712 0.85658 0.84259 1.90759 1.46895 1.86876 1.22256 1.45808 1.63024 1.05263 1.21156 1.22510 0.98768 0.79731 0.97742 0.89816 1.23510 1.01961 0.93806 0.97793 1.22627 0.94092 0.89966 0.90965 0.88090 1.86435 1.38497 1.60268 1.53266 1.24190 0.97994 0.97585 1.01958 1.20897 0.99595 0.98180 0.93952 1.20409 0.99145 0.90706 1.00151 1.19599 1.00877 0.94386 0.93826 0.75706 0.88586 1.23383 1.21267 0.76380 0.72487 0.85525 0.74478 0.90745 0.85309 0.74972 0.87169 0.91759 0.82945 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.15 12.88 -148.98 -1.92 -1.77 16 2 C -0.04 0.06 3.06 71.24 0.22 0.27 16 3 Si 0.79 -3.95 30.76 68.60 2.11 -1.84 16 4 C -0.23 0.12 5.57 -18.64 -0.10 0.01 16 5 C 0.10 -0.54 10.43 83.09 0.87 0.32 16 6 N -0.58 1.81 6.07 -187.71 -1.14 0.67 16 7 C 0.07 0.25 7.26 38.96 0.28 0.53 16 8 C -0.07 -0.46 9.61 22.63 0.22 -0.24 16 9 C -0.14 -0.87 5.87 -20.08 -0.12 -0.99 16 10 C 0.56 5.19 7.76 86.71 0.67 5.87 16 11 O -0.59 -10.54 15.93 -3.99 -0.06 -10.60 16 12 N -0.70 -1.50 5.31 -443.16 -2.35 -3.86 16 13 C 0.12 0.39 4.15 45.51 0.19 0.58 16 14 H 0.08 0.91 7.50 -2.39 -0.02 0.89 16 15 C -0.13 0.27 7.66 31.12 0.24 0.51 16 16 C 0.08 -0.18 5.28 31.18 0.16 -0.01 16 17 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 18 O -0.58 -1.02 13.59 -148.98 -2.02 -3.05 16 19 C -0.18 0.06 7.72 31.18 0.24 0.30 16 20 C -0.11 -0.15 9.46 22.28 0.21 0.06 16 21 C -0.09 -0.24 10.03 22.20 0.22 -0.02 16 22 C -0.08 -0.34 6.35 -20.14 -0.13 -0.46 16 23 H 0.39 -3.37 8.70 -74.05 -0.64 -4.02 16 24 H 0.10 0.09 7.96 -2.39 -0.02 0.07 16 25 H -0.31 -1.11 7.11 99.48 0.71 -0.40 16 26 H -0.29 0.00 7.11 99.48 0.71 0.70 16 27 H 0.22 -3.24 6.35 -2.91 -0.02 -3.26 16 28 H 0.43 -3.77 8.96 -92.71 -0.83 -4.60 16 29 H 0.13 0.95 7.62 -2.91 -0.02 0.93 16 30 H 0.42 -2.00 6.70 -92.71 -0.62 -2.62 16 31 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 32 H 0.13 -1.04 8.11 -2.38 -0.02 -1.06 16 33 H 0.40 -2.59 9.12 -74.06 -0.68 -3.27 16 34 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.15 -0.84 6.36 -2.91 -0.02 -0.86 16 37 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 Total: 0.00 -28.34 316.97 -3.79 -32.13 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -1.57 Total: -18.41 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 3.17 Total: 6.73 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -3.49 Total: -3.19 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -4.01 Total: -15.42 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.11 Total: -1.84 kcal Total: -28.34 -3.79 -32.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.456 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds