Wall clock time and date at job start Sat Mar 6 2021 19:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34852 * 125.89723 * 2 1 4 4 C 1.40943 * 107.46493 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.26680 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46938 * 255.02874 * 5 4 3 7 7 Si 1.86303 * 109.46882 * 15.02878 * 5 4 3 8 8 C 1.34851 * 107.46605 * 0.02562 * 4 3 2 9 9 C 1.50703 * 125.89598 * 180.02562 * 8 4 3 10 10 N 1.36559 * 108.20023 * 359.73325 * 8 4 3 11 11 C 1.40233 * 125.66686 * 180.26252 * 10 8 4 12 12 C 1.38912 * 119.99350 * 90.22290 * 11 10 8 13 13 C 1.50705 * 119.88259 * 359.95463 * 12 11 10 14 14 C 1.38258 * 120.22748 * 179.97438 * 12 11 10 15 15 C 1.37977 * 120.21868 * 359.97438 * 14 12 11 16 16 C 1.39615 * 119.98392 * 359.97438 * 15 14 12 17 17 C 1.47864 * 120.10931 * 180.02562 * 16 15 14 18 18 O 1.21553 * 119.99458 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00162 * 359.97438 * 17 16 15 20 20 C 1.46501 * 119.99798 * 179.97438 * 19 17 16 21 21 H 1.08998 * 112.85208 * 25.34282 * 20 19 17 22 22 C 1.53788 * 113.61229 * 156.53159 * 20 19 17 23 23 C 1.53783 * 87.07710 * 139.98425 * 22 20 19 24 24 H 1.09002 * 113.61142 * 220.01755 * 23 22 20 25 25 O 1.42895 * 113.61205 * 89.12088 * 23 22 20 26 26 C 1.53779 * 113.61709 * 254.13980 * 20 19 17 27 27 C 1.38591 * 119.99671 * 269.94507 * 11 10 8 28 28 H 1.09002 * 109.47152 * 90.02525 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02625 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02606 * 1 2 3 31 31 H 1.08001 * 126.26611 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46983 * 135.02330 * 5 4 3 33 33 H 0.96703 * 113.99929 * 180.02562 * 6 5 4 34 34 H 1.48499 * 109.99646 * 178.68198 * 7 5 4 35 35 H 1.48507 * 109.99906 * 299.99684 * 7 5 4 36 36 H 1.08996 * 109.47364 * 89.97382 * 9 8 4 37 37 H 1.09007 * 109.47009 * 209.97462 * 9 8 4 38 38 H 1.09000 * 109.47127 * 329.97097 * 9 8 4 39 39 H 1.09000 * 109.46932 * 90.00214 * 13 12 11 40 40 H 1.09001 * 109.46874 * 210.00127 * 13 12 11 41 41 H 1.08995 * 109.47421 * 329.99947 * 13 12 11 42 42 H 1.07998 * 119.89183 * 179.97438 * 14 12 11 43 43 H 1.08003 * 120.00625 * 179.97438 * 15 14 12 44 44 H 0.97001 * 120.00277 * 0.02562 * 19 17 16 45 45 H 1.08992 * 113.61571 * 254.53427 * 22 20 19 46 46 H 1.08999 * 113.61095 * 25.43967 * 22 20 19 47 47 H 0.96706 * 113.99615 * 179.97438 * 25 23 22 48 48 H 1.08997 * 113.61569 * 334.56749 * 26 20 19 49 49 H 1.09000 * 113.61512 * 105.47170 * 26 20 19 50 50 H 1.08000 * 120.10536 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6468 0.0006 5 6 4.8648 1.5176 0.0003 6 8 5.4549 1.5079 -1.3011 7 14 4.3911 3.2613 0.4544 8 6 3.6121 -0.7016 0.0004 9 6 4.8178 -1.6056 0.0014 10 7 2.3078 -1.1062 0.0057 11 6 1.8644 -2.4365 0.0124 12 6 1.6438 -3.0889 1.2188 13 6 1.8827 -2.3647 2.5187 14 6 1.2061 -4.4003 1.2311 15 6 0.9851 -5.0697 0.0451 16 6 1.2030 -4.4224 -1.1726 17 6 0.9664 -5.1370 -2.4453 18 8 1.1572 -4.5716 -3.5042 19 7 0.5403 -6.4155 -2.4312 20 6 0.3054 -7.1233 -3.6922 21 1 0.8928 -6.7226 -4.5183 22 6 0.3868 -8.6537 -3.5640 23 6 -0.8170 -8.7188 -4.5189 24 1 -1.5483 -9.4803 -4.2480 25 8 -0.4506 -8.7655 -5.8993 26 6 -1.1841 -7.3068 -4.0275 27 6 1.6409 -3.0985 -1.1845 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8902 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9669 2.1205 0.0004 32 1 5.5812 1.1348 0.7271 33 1 6.2533 2.0485 -1.3750 34 1 5.5998 4.1233 0.4887 35 1 3.4145 3.7948 -0.5289 36 1 5.1079 -1.8234 1.0292 37 1 4.5750 -2.5358 -0.5125 38 1 5.6428 -1.1117 -0.5120 39 1 0.9656 -1.8645 2.8299 40 1 2.1836 -3.0807 3.2835 41 1 2.6718 -1.6251 2.3829 42 1 1.0367 -4.9024 2.1722 43 1 0.6436 -6.0943 0.0587 44 1 0.3884 -6.8669 -1.5861 45 1 1.2991 -9.0789 -3.9819 46 1 0.1686 -9.0200 -2.5609 47 1 -1.2035 -8.8070 -6.5048 48 1 -1.8325 -7.3043 -3.1513 49 1 -1.5381 -6.6463 -4.8191 50 1 1.8081 -2.5915 -2.1233 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12122388_12335842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:42 Heat of formation + Delta-G solvation = -9.008023 kcal Electronic energy + Delta-G solvation = -31954.376107 eV Core-core repulsion = 27721.931297 eV Total energy + Delta-G solvation = -4232.444810 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.83586 -41.47686 -40.34228 -39.21213 -37.63487 -36.32768 -34.84856 -33.77819 -33.56110 -33.53047 -30.65227 -30.06463 -28.76623 -27.12016 -26.91174 -25.62208 -24.57855 -23.59318 -23.53117 -21.86685 -21.20820 -20.69757 -19.88322 -18.79827 -18.37856 -18.29104 -17.54812 -17.28621 -16.77936 -16.68285 -16.29943 -15.84768 -15.69572 -15.52310 -15.33214 -15.11710 -14.97106 -14.79790 -14.57460 -14.43773 -14.08322 -14.05591 -13.74533 -13.63443 -13.59690 -13.49805 -13.38933 -13.31602 -13.11365 -13.07492 -12.99605 -12.76487 -12.47746 -12.36215 -12.30680 -12.20417 -11.68532 -11.57616 -11.10551 -10.84585 -10.27335 -10.19231 -10.15562 -9.92023 -9.54741 -8.64947 -4.76289 -0.46019 -0.04829 1.21739 1.53092 1.64103 1.72966 1.85763 1.93097 2.08710 2.20178 2.54994 2.91869 3.30739 3.43110 3.52155 3.57446 3.66714 3.69013 3.70720 3.74511 3.83728 4.00003 4.06943 4.11460 4.24353 4.33569 4.36882 4.42982 4.46666 4.47173 4.49091 4.51675 4.63348 4.66049 4.68020 4.70379 4.72840 4.82206 4.83959 4.89768 4.91030 4.93172 5.00261 5.03983 5.06131 5.11431 5.20785 5.32663 5.39173 5.49454 5.52034 6.13893 6.30761 6.36933 6.56856 6.60500 6.69300 7.11632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.029 3.971 3 C -0.183 4.183 4 C -0.150 4.150 5 C -0.038 4.038 6 O -0.538 6.538 7 Si 0.691 3.309 8 C 0.055 3.945 9 C -0.087 4.087 10 N -0.401 5.401 11 C 0.104 3.896 12 C -0.040 4.040 13 C -0.123 4.123 14 C -0.120 4.120 15 C -0.070 4.070 16 C -0.134 4.134 17 C 0.561 3.439 18 O -0.528 6.528 19 N -0.717 5.717 20 C 0.130 3.870 21 H 0.121 0.879 22 C -0.141 4.141 23 C 0.082 3.918 24 H 0.077 0.923 25 O -0.550 6.550 26 C -0.185 4.185 27 C -0.039 4.039 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.065 0.935 33 H 0.373 0.627 34 H -0.268 1.268 35 H -0.257 1.257 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.400 0.600 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.385 0.615 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -4.619 7.166 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.207 4.207 4 C -0.156 4.156 5 C -0.148 4.148 6 O -0.344 6.344 7 Si 0.593 3.407 8 C -0.054 4.054 9 C -0.144 4.144 10 N -0.076 5.076 11 C 0.015 3.985 12 C -0.041 4.041 13 C -0.180 4.180 14 C -0.138 4.138 15 C -0.088 4.088 16 C -0.138 4.138 17 C 0.348 3.652 18 O -0.405 6.405 19 N -0.368 5.368 20 C 0.025 3.975 21 H 0.139 0.861 22 C -0.179 4.179 23 C 0.022 3.978 24 H 0.094 0.906 25 O -0.356 6.356 26 C -0.224 4.224 27 C -0.059 4.059 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.221 0.779 34 H -0.193 1.193 35 H -0.181 1.181 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.236 0.764 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.234 0.766 48 H 0.111 0.889 49 H 0.098 0.902 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.090 -4.050 6.275 8.083 hybrid contribution 0.209 -0.380 -0.677 0.804 sum -2.881 -4.431 5.599 7.699 Atomic orbital electron populations 1.20322 0.87974 1.03142 1.02801 1.20334 0.93371 0.84699 1.09524 1.20553 0.91793 0.97653 1.10702 1.18430 0.93153 0.91565 1.12443 1.24029 0.94521 1.09318 0.86978 1.86650 1.45406 1.71712 1.30675 0.94933 0.81700 0.74255 0.89785 1.20192 0.83838 0.93818 1.07590 1.20342 0.93847 0.97762 1.02447 1.41211 1.05468 1.02586 1.58375 1.17300 1.04158 0.84200 0.92868 1.20329 0.94811 0.94167 0.94799 1.20907 1.03302 1.00688 0.93076 1.20959 1.00604 0.93551 0.98715 1.21401 0.96283 0.99681 0.91471 1.19756 1.05927 0.94833 0.93288 1.18203 0.76617 0.81698 0.88663 1.90826 1.50935 1.66748 1.31993 1.45907 1.68460 1.12887 1.09587 1.22557 0.96613 0.91163 0.87163 0.86132 1.23458 0.99690 0.95283 0.99435 1.22507 0.96919 0.95861 0.82506 0.90563 1.86476 1.37127 1.96747 1.15265 1.24207 0.97373 0.98320 1.02487 1.21373 0.93378 0.92996 0.98153 0.91053 0.89827 0.91956 0.84020 0.91705 0.77950 1.19335 1.18140 0.91070 0.91964 0.89629 0.90065 0.90532 0.90556 0.84165 0.84928 0.76438 0.89477 0.88232 0.76640 0.88934 0.90172 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.04 10.09 36.01 0.36 0.33 16 2 C 0.03 0.08 6.86 -81.69 -0.56 -0.48 16 3 C -0.18 -0.58 9.27 -39.76 -0.37 -0.95 16 4 C -0.15 -0.52 5.39 -104.80 -0.56 -1.09 16 5 C -0.04 -0.07 2.49 36.01 0.09 0.02 16 6 O -0.54 -1.74 12.86 -35.23 -0.45 -2.20 16 7 Si 0.69 0.64 30.84 -169.99 -5.24 -4.60 16 8 C 0.05 0.18 6.33 -81.69 -0.52 -0.34 16 9 C -0.09 -0.14 9.87 36.01 0.36 0.22 16 10 N -0.40 -1.09 1.85 -52.61 -0.10 -1.19 16 11 C 0.10 0.18 4.49 -83.63 -0.38 -0.20 16 12 C -0.04 0.01 5.90 -104.36 -0.62 -0.60 16 13 C -0.12 0.19 9.76 36.01 0.35 0.54 16 14 C -0.12 0.24 9.67 -39.67 -0.38 -0.14 16 15 C -0.07 0.13 9.54 -39.16 -0.37 -0.24 16 16 C -0.13 -0.15 5.87 -104.99 -0.62 -0.77 16 17 C 0.56 1.57 7.77 -12.32 -0.10 1.47 16 18 O -0.53 -3.78 15.96 5.32 0.08 -3.70 16 19 N -0.72 0.30 5.31 -53.95 -0.29 0.01 16 20 C 0.13 0.04 4.15 -67.11 -0.28 -0.24 16 21 H 0.12 0.39 7.50 -51.93 -0.39 0.00 16 22 C -0.14 0.23 7.66 -25.91 -0.20 0.03 16 23 C 0.08 -0.11 5.28 -25.83 -0.14 -0.25 16 24 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 25 O -0.55 -0.12 13.59 -35.23 -0.48 -0.60 16 26 C -0.18 0.17 7.72 -25.83 -0.20 -0.03 16 27 C -0.04 -0.10 9.51 -39.00 -0.37 -0.48 16 28 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.06 0.00 7.83 -51.93 -0.41 -0.40 16 31 H 0.14 0.29 6.55 -52.49 -0.34 -0.06 16 32 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 33 H 0.37 -0.33 8.74 45.56 0.40 0.07 16 34 H -0.27 -0.72 7.11 56.52 0.40 -0.32 16 35 H -0.26 -1.08 7.06 56.52 0.40 -0.68 16 36 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.06 0.12 7.84 -51.92 -0.41 -0.28 16 38 H 0.08 0.16 7.87 -51.93 -0.41 -0.25 16 39 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 40 H 0.08 -0.23 8.08 -51.93 -0.42 -0.65 16 41 H 0.08 -0.01 6.99 -51.93 -0.36 -0.37 16 42 H 0.14 -0.62 8.06 -52.49 -0.42 -1.04 16 43 H 0.13 -0.66 6.40 -52.48 -0.34 -1.00 16 44 H 0.40 -1.45 6.74 -40.82 -0.28 -1.73 16 45 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 46 H 0.10 -0.39 8.11 -51.93 -0.42 -0.81 16 47 H 0.39 -1.46 9.12 45.56 0.42 -1.04 16 48 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 49 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 50 H 0.14 0.66 7.65 -52.49 -0.40 0.26 16 LS Contribution 412.79 15.07 6.22 6.22 Total: 0.00 -10.47 412.79 -11.53 -21.99 By element: Atomic # 1 Polarization: -5.97 SS G_CDS: -6.78 Total: -12.75 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -4.50 Total: -3.19 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -0.38 Total: -1.18 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.85 Total: -6.49 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: -5.24 Total: -4.60 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -10.47 -11.53 -21.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.983 kcal (2) G-P(sol) polarization free energy of solvation -10.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds