Wall clock time and date at job start Sat Mar 6 2021 19:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34852 * 125.89723 * 2 1 4 4 C 1.40943 * 107.46493 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.26680 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46938 * 255.02874 * 5 4 3 7 7 Si 1.86303 * 109.46882 * 15.02878 * 5 4 3 8 8 C 1.34851 * 107.46605 * 0.02562 * 4 3 2 9 9 C 1.50703 * 125.89598 * 180.02562 * 8 4 3 10 10 N 1.36559 * 108.20023 * 359.73325 * 8 4 3 11 11 C 1.40233 * 125.66686 * 180.26252 * 10 8 4 12 12 C 1.38912 * 119.99350 * 90.22290 * 11 10 8 13 13 C 1.50705 * 119.88259 * 359.95463 * 12 11 10 14 14 C 1.38258 * 120.22748 * 179.97438 * 12 11 10 15 15 C 1.37977 * 120.21868 * 359.97438 * 14 12 11 16 16 C 1.39615 * 119.98392 * 359.97438 * 15 14 12 17 17 C 1.47864 * 120.10931 * 180.02562 * 16 15 14 18 18 O 1.21553 * 119.99458 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00162 * 359.97438 * 17 16 15 20 20 C 1.46501 * 119.99798 * 179.97438 * 19 17 16 21 21 H 1.08998 * 112.85208 * 25.34282 * 20 19 17 22 22 C 1.53788 * 113.61229 * 156.53159 * 20 19 17 23 23 C 1.53783 * 87.07710 * 139.98425 * 22 20 19 24 24 H 1.09002 * 113.61142 * 220.01755 * 23 22 20 25 25 O 1.42895 * 113.61205 * 89.12088 * 23 22 20 26 26 C 1.53779 * 113.61709 * 254.13980 * 20 19 17 27 27 C 1.38591 * 119.99671 * 269.94507 * 11 10 8 28 28 H 1.09002 * 109.47152 * 90.02525 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02625 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02606 * 1 2 3 31 31 H 1.08001 * 126.26611 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46983 * 135.02330 * 5 4 3 33 33 H 0.96703 * 113.99929 * 180.02562 * 6 5 4 34 34 H 1.48499 * 109.99646 * 178.68198 * 7 5 4 35 35 H 1.48507 * 109.99906 * 299.99684 * 7 5 4 36 36 H 1.08996 * 109.47364 * 89.97382 * 9 8 4 37 37 H 1.09007 * 109.47009 * 209.97462 * 9 8 4 38 38 H 1.09000 * 109.47127 * 329.97097 * 9 8 4 39 39 H 1.09000 * 109.46932 * 90.00214 * 13 12 11 40 40 H 1.09001 * 109.46874 * 210.00127 * 13 12 11 41 41 H 1.08995 * 109.47421 * 329.99947 * 13 12 11 42 42 H 1.07998 * 119.89183 * 179.97438 * 14 12 11 43 43 H 1.08003 * 120.00625 * 179.97438 * 15 14 12 44 44 H 0.97001 * 120.00277 * 0.02562 * 19 17 16 45 45 H 1.08992 * 113.61571 * 254.53427 * 22 20 19 46 46 H 1.08999 * 113.61095 * 25.43967 * 22 20 19 47 47 H 0.96706 * 113.99615 * 179.97438 * 25 23 22 48 48 H 1.08997 * 113.61569 * 334.56749 * 26 20 19 49 49 H 1.09000 * 113.61512 * 105.47170 * 26 20 19 50 50 H 1.08000 * 120.10536 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6468 0.0006 5 6 4.8648 1.5176 0.0003 6 8 5.4549 1.5079 -1.3011 7 14 4.3911 3.2613 0.4544 8 6 3.6121 -0.7016 0.0004 9 6 4.8178 -1.6056 0.0014 10 7 2.3078 -1.1062 0.0057 11 6 1.8644 -2.4365 0.0124 12 6 1.6438 -3.0889 1.2188 13 6 1.8827 -2.3647 2.5187 14 6 1.2061 -4.4003 1.2311 15 6 0.9851 -5.0697 0.0451 16 6 1.2030 -4.4224 -1.1726 17 6 0.9664 -5.1370 -2.4453 18 8 1.1572 -4.5716 -3.5042 19 7 0.5403 -6.4155 -2.4312 20 6 0.3054 -7.1233 -3.6922 21 1 0.8928 -6.7226 -4.5183 22 6 0.3868 -8.6537 -3.5640 23 6 -0.8170 -8.7188 -4.5189 24 1 -1.5483 -9.4803 -4.2480 25 8 -0.4506 -8.7655 -5.8993 26 6 -1.1841 -7.3068 -4.0275 27 6 1.6409 -3.0985 -1.1845 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8902 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9669 2.1205 0.0004 32 1 5.5812 1.1348 0.7271 33 1 6.2533 2.0485 -1.3750 34 1 5.5998 4.1233 0.4887 35 1 3.4145 3.7948 -0.5289 36 1 5.1079 -1.8234 1.0292 37 1 4.5750 -2.5358 -0.5125 38 1 5.6428 -1.1117 -0.5120 39 1 0.9656 -1.8645 2.8299 40 1 2.1836 -3.0807 3.2835 41 1 2.6718 -1.6251 2.3829 42 1 1.0367 -4.9024 2.1722 43 1 0.6436 -6.0943 0.0587 44 1 0.3884 -6.8669 -1.5861 45 1 1.2991 -9.0789 -3.9819 46 1 0.1686 -9.0200 -2.5609 47 1 -1.2035 -8.8070 -6.5048 48 1 -1.8325 -7.3043 -3.1513 49 1 -1.5381 -6.6463 -4.8191 50 1 1.8081 -2.5915 -2.1233 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_12335842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:40 Heat of formation + Delta-G solvation = -10.154421 kcal Electronic energy + Delta-G solvation = -31954.425819 eV Core-core repulsion = 27721.931297 eV Total energy + Delta-G solvation = -4232.494522 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.95925 -41.57110 -40.31576 -39.31647 -37.81916 -36.37612 -34.92225 -33.85353 -33.65965 -33.54972 -30.70170 -30.16731 -28.73944 -27.25093 -26.81352 -25.62326 -24.67726 -23.63100 -23.54745 -21.96866 -21.21283 -20.79852 -19.98981 -18.80659 -18.47762 -18.42898 -17.59764 -17.34721 -16.86389 -16.63517 -16.38739 -15.94416 -15.83661 -15.61945 -15.44377 -15.20109 -14.99635 -14.79851 -14.56215 -14.46672 -14.24037 -14.15838 -13.72936 -13.72115 -13.58602 -13.54257 -13.33180 -13.25360 -13.17340 -13.11942 -12.99721 -12.76195 -12.59014 -12.46382 -12.34286 -12.30840 -11.91278 -11.50512 -11.29605 -10.80538 -10.36537 -10.28417 -10.19892 -9.89706 -9.72864 -8.83574 -4.87322 -0.46582 -0.05205 1.04076 1.39942 1.54990 1.60608 1.73009 1.75720 2.01496 2.05130 2.51605 3.09093 3.37660 3.45226 3.59553 3.62547 3.64925 3.66960 3.74643 3.77015 3.87357 3.98159 4.09841 4.12332 4.15169 4.22495 4.36617 4.39653 4.48979 4.55128 4.56219 4.60703 4.64511 4.65573 4.66216 4.67974 4.72901 4.78902 4.90020 4.94347 4.96362 4.97342 5.00053 5.03008 5.06021 5.12415 5.14303 5.27258 5.34332 5.39780 5.55858 5.96332 6.13128 6.36171 6.48030 6.69115 6.82167 7.02972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.020 3.980 3 C -0.202 4.202 4 C -0.168 4.168 5 C -0.049 4.049 6 O -0.563 6.563 7 Si 0.775 3.225 8 C 0.039 3.961 9 C -0.080 4.080 10 N -0.401 5.401 11 C 0.089 3.911 12 C -0.038 4.038 13 C -0.121 4.121 14 C -0.108 4.108 15 C -0.053 4.053 16 C -0.145 4.145 17 C 0.556 3.444 18 O -0.588 6.588 19 N -0.695 5.695 20 C 0.116 3.884 21 H 0.079 0.921 22 C -0.130 4.130 23 C 0.081 3.919 24 H 0.103 0.897 25 O -0.578 6.578 26 C -0.178 4.178 27 C -0.061 4.061 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.085 0.915 33 H 0.389 0.611 34 H -0.287 1.287 35 H -0.306 1.306 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.179 0.821 43 H 0.173 0.827 44 H 0.419 0.581 45 H 0.073 0.927 46 H 0.134 0.866 47 H 0.399 0.601 48 H 0.114 0.886 49 H 0.060 0.940 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 -6.950 10.373 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.226 4.226 4 C -0.174 4.174 5 C -0.159 4.159 6 O -0.372 6.372 7 Si 0.681 3.319 8 C -0.071 4.071 9 C -0.138 4.138 10 N -0.076 5.076 11 C 0.000 4.000 12 C -0.040 4.040 13 C -0.177 4.177 14 C -0.126 4.126 15 C -0.071 4.071 16 C -0.149 4.149 17 C 0.344 3.656 18 O -0.469 6.469 19 N -0.347 5.347 20 C 0.011 3.989 21 H 0.098 0.902 22 C -0.168 4.168 23 C 0.022 3.978 24 H 0.121 0.879 25 O -0.386 6.386 26 C -0.217 4.217 27 C -0.081 4.081 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.103 0.897 33 H 0.238 0.762 34 H -0.214 1.214 35 H -0.234 1.234 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.196 0.804 43 H 0.190 0.810 44 H 0.259 0.741 45 H 0.092 0.908 46 H 0.152 0.848 47 H 0.250 0.750 48 H 0.132 0.868 49 H 0.079 0.921 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.095 -6.440 9.518 12.200 hybrid contribution 0.501 0.326 -1.731 1.831 sum -3.594 -6.114 7.787 10.533 Atomic orbital electron populations 1.20361 0.86605 1.04278 1.02644 1.20721 0.94407 0.84772 1.08960 1.20737 0.92116 0.98133 1.11592 1.18725 0.93813 0.92069 1.12805 1.24284 0.94598 1.10109 0.86876 1.86605 1.46519 1.72494 1.31618 0.93990 0.78232 0.71885 0.87804 1.20507 0.84584 0.94222 1.07791 1.20313 0.93123 0.96938 1.03391 1.41312 1.05329 1.03134 1.57800 1.17419 1.05303 0.83891 0.93375 1.20578 0.94142 0.94979 0.94252 1.20930 1.03077 1.00818 0.92862 1.21396 0.98610 0.92572 1.00049 1.21780 0.94335 1.01086 0.89933 1.19683 1.07103 0.94277 0.93812 1.18581 0.76010 0.82433 0.88558 1.90795 1.53755 1.68208 1.34119 1.45743 1.66880 1.11723 1.10388 1.22522 0.97319 0.92634 0.86418 0.90237 1.23514 0.99202 0.92887 1.01176 1.22658 0.97429 0.95943 0.81790 0.87906 1.86440 1.38814 1.96785 1.16587 1.24206 0.96350 0.98437 1.02751 1.21171 0.95585 0.94116 0.97200 0.91802 0.88151 0.91276 0.83589 0.89748 0.76154 1.21410 1.23404 0.89195 0.92813 0.90118 0.89468 0.88270 0.92164 0.80397 0.81016 0.74123 0.90805 0.84796 0.74998 0.86760 0.92108 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.09 71.24 0.72 0.56 16 2 C 0.02 0.14 6.86 41.05 0.28 0.42 16 3 C -0.20 -1.67 9.27 22.15 0.21 -1.46 16 4 C -0.17 -1.46 5.39 -19.98 -0.11 -1.56 16 5 C -0.05 -0.24 2.49 71.24 0.18 -0.07 16 6 O -0.56 -4.51 12.86 -148.98 -1.92 -6.43 16 7 Si 0.77 2.18 30.84 68.60 2.12 4.29 16 8 C 0.04 0.32 6.33 41.05 0.26 0.58 16 9 C -0.08 -0.37 9.87 71.24 0.70 0.33 16 10 N -0.40 -2.90 1.85 -320.36 -0.59 -3.50 16 11 C 0.09 0.40 4.49 38.04 0.17 0.58 16 12 C -0.04 0.07 5.90 -19.70 -0.12 -0.04 16 13 C -0.12 0.57 9.76 71.24 0.70 1.27 16 14 C -0.11 0.78 9.67 22.21 0.21 0.99 16 15 C -0.05 0.33 9.54 22.54 0.21 0.54 16 16 C -0.15 -0.45 5.87 -20.10 -0.12 -0.57 16 17 C 0.56 4.14 7.77 86.79 0.67 4.82 16 18 O -0.59 -10.90 15.96 -3.88 -0.06 -10.96 16 19 N -0.70 0.62 5.31 -442.88 -2.35 -1.73 16 20 C 0.12 0.19 4.15 45.52 0.19 0.38 16 21 H 0.08 0.81 7.50 -2.39 -0.02 0.79 16 22 C -0.13 0.54 7.66 31.12 0.24 0.78 16 23 C 0.08 -0.29 5.28 31.18 0.16 -0.12 16 24 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 25 O -0.58 -0.66 13.59 -148.98 -2.02 -2.68 16 26 C -0.18 0.34 7.72 31.18 0.24 0.58 16 27 C -0.06 -0.48 9.51 22.65 0.22 -0.27 16 28 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.07 0.03 7.83 -2.38 -0.02 0.01 16 31 H 0.15 0.89 6.55 -2.91 -0.02 0.87 16 32 H 0.08 0.05 7.96 -2.39 -0.02 0.03 16 33 H 0.39 -0.25 8.74 -74.06 -0.65 -0.90 16 34 H -0.29 -1.66 7.11 99.48 0.71 -0.95 16 35 H -0.31 -3.33 7.06 99.48 0.70 -2.63 16 36 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.05 0.33 7.84 -2.38 -0.02 0.31 16 38 H 0.08 0.43 7.87 -2.39 -0.02 0.41 16 39 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.10 -0.91 8.08 -2.39 -0.02 -0.93 16 41 H 0.06 -0.05 6.99 -2.39 -0.02 -0.06 16 42 H 0.18 -2.54 8.06 -2.91 -0.02 -2.56 16 43 H 0.17 -2.49 6.40 -2.91 -0.02 -2.51 16 44 H 0.42 -4.03 6.74 -92.71 -0.63 -4.65 16 45 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.13 -1.50 8.11 -2.39 -0.02 -1.52 16 47 H 0.40 -2.76 9.12 -74.05 -0.68 -3.43 16 48 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 49 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.10 1.55 7.65 -2.91 -0.02 1.52 16 Total: 0.00 -30.86 412.79 -0.73 -31.60 By element: Atomic # 1 Polarization: -17.39 SS G_CDS: -0.93 Total: -18.32 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.02 Total: 7.73 kcal Atomic # 7 Polarization: -2.28 SS G_CDS: -2.95 Total: -5.23 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -4.00 Total: -20.07 kcal Atomic # 14 Polarization: 2.18 SS G_CDS: 2.12 Total: 4.29 kcal Total: -30.86 -0.73 -31.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds