Wall clock time and date at job start Sat Mar 6 2021 19:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34851 * 125.89614 * 2 1 4 4 C 1.40950 * 107.46748 * 180.15517 * 3 2 1 5 5 C 1.50699 * 126.26639 * 179.82857 * 4 3 2 6 6 O 1.42892 * 109.47249 * 104.69148 * 5 4 3 7 7 Si 1.86298 * 109.47032 * 344.68534 * 5 4 3 8 8 C 1.34847 * 107.46260 * 359.56799 * 4 3 2 9 9 C 1.50704 * 125.89799 * 180.24019 * 8 4 3 10 10 N 1.36568 * 108.20758 * 0.26056 * 8 4 3 11 11 C 1.40199 * 125.67276 * 179.97438 * 10 8 4 12 12 C 1.38824 * 120.06444 * 294.71996 * 11 10 8 13 13 C 1.38120 * 119.93235 * 179.76444 * 12 11 10 14 14 C 1.38273 * 120.06775 * 0.49731 * 13 12 11 15 15 C 1.50704 * 119.93913 * 179.76477 * 14 13 12 16 16 C 1.50701 * 109.46535 * 270.01842 * 15 14 13 17 17 O 1.21282 * 120.00456 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99625 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00120 * 180.02562 * 18 16 15 20 20 H 1.09002 * 112.84724 * 334.66224 * 19 18 16 21 21 C 1.53778 * 113.61871 * 105.86108 * 19 18 16 22 22 C 1.54048 * 86.98399 * 89.15969 * 21 19 18 23 23 H 1.08999 * 113.61869 * 270.88900 * 22 21 19 24 24 O 1.42909 * 113.69362 * 139.98894 * 22 21 19 25 25 C 1.53779 * 113.61567 * 203.47349 * 19 18 16 26 26 C 1.38278 * 120.13158 * 359.77967 * 14 13 12 27 27 C 1.38126 * 120.06462 * 359.96043 * 26 14 13 28 28 H 1.09004 * 109.46944 * 270.32620 * 1 2 3 29 29 H 1.08998 * 109.47378 * 30.32444 * 1 2 3 30 30 H 1.08995 * 109.46980 * 150.32607 * 1 2 3 31 31 H 1.08003 * 126.26959 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46453 * 224.69217 * 5 4 3 33 33 H 0.96703 * 114.00176 * 299.99748 * 6 5 4 34 34 H 1.48506 * 109.99834 * 58.68765 * 7 5 4 35 35 H 1.48502 * 110.00011 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.46900 * 90.02198 * 9 8 4 37 37 H 1.08993 * 109.47282 * 210.01776 * 9 8 4 38 38 H 1.09000 * 109.47211 * 330.03045 * 9 8 4 39 39 H 1.07996 * 120.03103 * 0.02562 * 12 11 10 40 40 H 1.08005 * 119.97016 * 180.23205 * 13 12 11 41 41 H 1.08992 * 109.46641 * 30.01451 * 15 14 13 42 42 H 1.08996 * 109.47080 * 150.01920 * 15 14 13 43 43 H 0.96998 * 119.99793 * 359.97438 * 18 16 15 44 44 H 1.08996 * 113.61917 * 203.66574 * 21 19 18 45 45 H 1.09007 * 113.61000 * 334.56693 * 21 19 18 46 46 H 0.96703 * 113.99492 * 82.46668 * 24 22 21 47 47 H 1.08997 * 113.61723 * 25.42599 * 25 19 18 48 48 H 1.08994 * 113.61730 * 156.24839 * 25 19 18 49 49 H 1.07997 * 119.97200 * 179.97438 * 26 14 13 50 50 H 1.07997 * 120.03542 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6349 0.6468 -0.0036 5 6 4.8647 1.5178 -0.0086 6 8 5.4550 1.5159 1.2927 7 14 4.3910 3.2586 -0.4732 8 6 3.6122 -0.7014 0.0040 9 6 4.8179 -1.6055 0.0086 10 7 2.3079 -1.1062 0.0063 11 6 1.8647 -2.4363 0.0133 12 6 2.1213 -3.2606 -1.0738 13 6 1.6876 -4.5719 -1.0620 14 6 0.9895 -5.0609 0.0268 15 6 0.5131 -6.4907 0.0344 16 6 -0.8675 -6.5631 -0.5654 17 8 -1.4112 -5.5533 -0.9598 18 7 -1.4980 -7.7503 -0.6637 19 6 -2.8398 -7.8210 -1.2473 20 1 -3.3896 -6.8839 -1.1591 21 6 -2.8649 -8.4188 -2.6639 22 6 -3.0266 -9.7956 -1.9920 23 1 -2.0793 -10.2829 -1.7613 24 8 -3.9453 -10.6588 -2.6652 25 6 -3.6439 -9.0517 -0.7960 26 6 0.7274 -4.2406 1.1087 27 6 1.1632 -2.9299 1.1049 28 1 -0.3633 0.0059 1.0277 29 1 -0.3634 0.8870 -0.5188 30 1 -0.3633 -0.8929 -0.5087 31 1 1.9669 2.1205 -0.0004 32 1 5.5811 1.1305 -0.7332 33 1 4.8726 1.8486 1.9893 34 1 3.3905 3.7866 0.4889 35 1 5.5952 4.1274 -0.4823 36 1 5.1088 -1.8180 1.0374 37 1 4.5747 -2.5382 -0.5001 38 1 5.6425 -1.1141 -0.5079 39 1 2.6631 -2.8781 -1.9261 40 1 1.8902 -5.2149 -1.9058 41 1 1.1967 -7.1044 -0.5519 42 1 0.4834 -6.8583 1.0601 43 1 -1.0630 -8.5580 -0.3486 44 1 -3.7315 -8.1149 -3.2509 45 1 -1.9249 -8.3024 -3.2035 46 1 -3.5628 -11.1295 -3.4184 47 1 -3.3326 -9.4459 0.1713 48 1 -4.7232 -8.9199 -0.8718 49 1 0.1816 -4.6251 1.9576 50 1 0.9579 -2.2895 1.9500 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12122388_12335864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:37:50 Heat of formation + Delta-G solvation = -13.725268 kcal Electronic energy + Delta-G solvation = -31095.745936 eV Core-core repulsion = 26863.096571 eV Total energy + Delta-G solvation = -4232.649365 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.85935 -41.43543 -40.30045 -39.29781 -37.84850 -36.38699 -34.90982 -33.81453 -33.72096 -32.09585 -31.95239 -30.15854 -28.61134 -26.92406 -26.80146 -25.26493 -24.51088 -23.97096 -23.19732 -21.73479 -20.99501 -20.53970 -20.34213 -18.81436 -18.11160 -17.89174 -17.60244 -17.27103 -17.16494 -16.41554 -16.38629 -16.09735 -15.78963 -15.66606 -15.54035 -15.21601 -14.99607 -14.76823 -14.62475 -14.52863 -14.31928 -14.12362 -14.01883 -13.67464 -13.55072 -13.45743 -13.39227 -13.24143 -13.17256 -12.89526 -12.82201 -12.74225 -12.54511 -12.41279 -12.17342 -12.07384 -11.70074 -11.51431 -11.06784 -10.76794 -10.49148 -10.15091 -10.12394 -10.07577 -9.40348 -8.84694 -4.84965 -0.06644 0.26335 1.12192 1.42524 1.58105 1.66787 1.75678 1.82649 2.01907 2.04473 2.61467 3.28291 3.44393 3.55904 3.56522 3.63807 3.72087 3.73568 3.80227 3.83635 3.94336 3.97464 4.03455 4.12088 4.21815 4.26830 4.33007 4.41885 4.51669 4.56076 4.57099 4.57846 4.63437 4.65760 4.71384 4.71440 4.74559 4.78327 4.90938 4.91879 4.95117 4.99210 5.00647 5.04642 5.08605 5.15518 5.27240 5.35431 5.43479 5.52467 5.73129 5.98096 6.16455 6.49374 6.50990 6.56917 6.86471 7.22981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.014 3.986 3 C -0.200 4.200 4 C -0.203 4.203 5 C -0.045 4.045 6 O -0.551 6.551 7 Si 0.772 3.228 8 C 0.039 3.961 9 C -0.080 4.080 10 N -0.403 5.403 11 C 0.100 3.900 12 C -0.117 4.117 13 C -0.095 4.095 14 C -0.062 4.062 15 C -0.098 4.098 16 C 0.516 3.484 17 O -0.578 6.578 18 N -0.701 5.701 19 C 0.119 3.881 20 H 0.083 0.917 21 C -0.180 4.180 22 C 0.081 3.919 23 H 0.106 0.894 24 O -0.582 6.582 25 C -0.133 4.133 26 C -0.097 4.097 27 C -0.118 4.118 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.381 0.619 34 H -0.288 1.288 35 H -0.303 1.303 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.419 0.581 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.396 0.604 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.146 0.854 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -8.328 -0.805 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.224 4.224 4 C -0.209 4.209 5 C -0.155 4.155 6 O -0.359 6.359 7 Si 0.678 3.322 8 C -0.071 4.071 9 C -0.138 4.138 10 N -0.077 5.077 11 C 0.011 3.989 12 C -0.136 4.136 13 C -0.114 4.114 14 C -0.063 4.063 15 C -0.137 4.137 16 C 0.304 3.696 17 O -0.457 6.457 18 N -0.354 5.354 19 C 0.013 3.987 20 H 0.101 0.899 21 C -0.219 4.219 22 C 0.022 3.978 23 H 0.124 0.876 24 O -0.390 6.390 25 C -0.171 4.171 26 C -0.115 4.115 27 C -0.137 4.137 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.230 0.770 34 H -0.214 1.214 35 H -0.231 1.231 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.257 0.743 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.246 0.754 47 H 0.114 0.886 48 H 0.111 0.889 49 H 0.164 0.836 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.282 -7.121 -0.715 7.162 hybrid contribution 0.310 -0.365 0.854 0.979 sum 0.028 -7.486 0.139 7.487 Atomic orbital electron populations 1.20344 0.86964 1.03559 1.03034 1.20745 0.94308 0.85121 1.09307 1.20774 0.92045 0.98097 1.11439 1.19670 0.94991 0.92776 1.13499 1.24447 0.94503 1.09350 0.87162 1.86526 1.44558 1.87109 1.17699 0.93836 0.77060 0.72029 0.89270 1.20578 0.84478 0.94400 1.07676 1.20331 0.93030 0.97645 1.02768 1.41554 1.05584 1.03478 1.57090 1.17837 1.01755 0.83160 0.96134 1.21237 1.01002 0.94420 0.96899 1.21163 0.97092 0.94712 0.98408 1.19649 0.96749 0.95904 0.93978 1.20788 0.92712 0.94235 1.05934 1.21053 0.88184 0.82711 0.77668 1.90761 1.68528 1.36389 1.50036 1.45581 1.16853 1.10151 1.62820 1.21511 0.84148 0.98898 0.94130 0.89862 1.24154 1.02990 0.97762 0.97026 1.23577 0.93177 0.88132 0.92921 0.87601 1.86496 1.41113 1.62004 1.49371 1.23407 1.01050 0.93882 0.98757 1.21144 0.98589 0.92456 0.99309 1.21200 0.98863 0.96605 0.97002 0.90600 0.88672 0.92572 0.83221 0.86729 0.76995 1.21435 1.23080 0.91382 0.91211 0.89347 0.85161 0.83387 0.84431 0.84566 0.74284 0.89554 0.90706 0.75428 0.88595 0.88870 0.83615 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 9.94 71.24 0.71 0.47 16 2 C 0.01 0.09 6.81 41.04 0.28 0.37 16 3 C -0.20 -1.22 9.27 22.16 0.21 -1.02 16 4 C -0.20 -1.28 5.35 -19.98 -0.11 -1.39 16 5 C -0.04 -0.19 2.60 71.24 0.19 -0.01 16 6 O -0.55 -3.81 12.88 -148.98 -1.92 -5.73 16 7 Si 0.77 2.04 30.87 68.60 2.12 4.16 16 8 C 0.04 0.26 6.81 41.04 0.28 0.54 16 9 C -0.08 -0.25 9.87 71.24 0.70 0.46 16 10 N -0.40 -2.79 2.79 -320.25 -0.89 -3.68 16 11 C 0.10 0.51 4.83 38.08 0.18 0.70 16 12 C -0.12 -0.33 8.80 22.38 0.20 -0.13 16 13 C -0.10 0.04 9.69 22.25 0.22 0.26 16 14 C -0.06 0.10 4.37 -19.85 -0.09 0.02 16 15 C -0.10 0.82 5.83 29.10 0.17 0.99 16 16 C 0.52 -0.78 7.82 87.66 0.69 -0.09 16 17 O -0.58 -5.47 15.65 -3.04 -0.05 -5.52 16 18 N -0.70 4.45 5.26 -440.04 -2.32 2.13 16 19 C 0.12 -0.27 4.29 45.52 0.20 -0.07 16 20 H 0.08 0.28 7.50 -2.39 -0.02 0.26 16 21 C -0.18 0.48 7.73 31.21 0.24 0.72 16 22 C 0.08 -0.42 5.10 31.21 0.16 -0.26 16 23 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 24 O -0.58 0.85 13.68 -148.98 -2.04 -1.19 16 25 C -0.13 0.57 7.65 31.12 0.24 0.81 16 26 C -0.10 -0.01 9.69 22.25 0.22 0.21 16 27 C -0.12 -0.41 9.73 22.38 0.22 -0.19 16 28 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 0.28 7.83 -2.39 -0.02 0.26 16 31 H 0.15 0.51 6.53 -2.91 -0.02 0.50 16 32 H 0.11 0.28 7.50 -2.38 -0.02 0.26 16 33 H 0.38 0.87 8.70 -74.06 -0.64 0.22 16 34 H -0.29 -1.95 7.01 99.48 0.70 -1.25 16 35 H -0.30 -2.78 7.11 99.48 0.71 -2.07 16 36 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.07 0.10 6.86 -2.39 -0.02 0.08 16 38 H 0.09 0.13 7.50 -2.39 -0.02 0.11 16 39 H 0.13 0.25 8.06 -2.91 -0.02 0.22 16 40 H 0.15 -0.72 8.06 -2.91 -0.02 -0.74 16 41 H 0.14 -1.93 8.08 -2.39 -0.02 -1.95 16 42 H 0.14 -1.86 8.08 -2.39 -0.02 -1.88 16 43 H 0.42 -5.62 8.70 -92.71 -0.81 -6.43 16 44 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 46 H 0.40 -3.68 9.12 -74.06 -0.68 -4.35 16 47 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 48 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 50 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 Total: 0.00 -25.06 415.24 -1.33 -26.39 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -1.12 Total: -18.95 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 4.89 Total: 2.38 kcal Atomic # 7 Polarization: 1.66 SS G_CDS: -3.21 Total: -1.55 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -4.00 Total: -12.43 kcal Atomic # 14 Polarization: 2.04 SS G_CDS: 2.12 Total: 4.16 kcal Total: -25.06 -1.33 -26.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12122388_12335864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.665 kcal (2) G-P(sol) polarization free energy of solvation -25.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds